Wall clock time and date at job start Fri Apr 10 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00380 * 2 1 4 4 C 1.50699 * 109.47110 * 66.04330 * 3 2 1 5 5 C 1.38229 * 120.00048 * 90.00379 * 4 3 2 6 6 C 1.38229 * 120.00267 * 179.72665 * 5 4 3 7 7 C 1.38244 * 119.99759 * 0.25134 * 6 5 4 8 8 C 1.38234 * 119.99782 * 0.02629 * 7 6 5 9 9 C 1.38228 * 120.00085 * 359.97168 * 8 7 6 10 10 C 1.46904 * 110.99864 * 236.04298 * 2 1 3 11 11 H 1.08999 * 110.27442 * 66.03025 * 10 2 1 12 12 C 1.54601 * 110.30824 * 303.82899 * 10 2 1 13 13 C 1.54934 * 102.92021 * 219.12687 * 12 10 2 14 14 N 1.48535 * 103.22914 * 37.41942 * 13 12 10 15 15 C 1.46900 * 111.00031 * 200.27506 * 14 13 12 16 16 C 1.52996 * 109.47232 * 307.39587 * 15 14 13 17 17 C 1.50700 * 109.47285 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00354 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00065 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99904 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47387 * 89.99667 * 21 19 17 23 23 H 1.48497 * 109.46890 * 209.99967 * 21 19 17 24 24 H 1.48508 * 109.47032 * 329.99388 * 21 19 17 25 25 C 1.47901 * 105.81696 * 320.78824 * 14 13 12 26 26 H 1.09004 * 109.46927 * 54.83807 * 1 2 3 27 27 H 1.08997 * 109.47457 * 174.83502 * 1 2 3 28 28 H 1.09000 * 109.47617 * 294.83799 * 1 2 3 29 29 H 1.09002 * 109.46882 * 306.04355 * 3 2 1 30 30 H 1.08997 * 109.47095 * 186.04831 * 3 2 1 31 31 H 1.08000 * 120.00097 * 359.97438 * 5 4 3 32 32 H 1.08006 * 120.00393 * 180.27264 * 6 5 4 33 33 H 1.07995 * 119.99679 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.99527 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.00097 * 179.97438 * 9 8 7 36 36 H 1.08994 * 110.72638 * 337.48816 * 12 10 2 37 37 H 1.09000 * 110.71958 * 100.76973 * 12 10 2 38 38 H 1.08998 * 110.66986 * 278.98241 * 13 12 10 39 39 H 1.08998 * 110.80906 * 155.91795 * 13 12 10 40 40 H 1.09008 * 109.46812 * 67.39602 * 15 14 13 41 41 H 1.08993 * 109.47124 * 187.39228 * 15 14 13 42 42 H 1.08996 * 109.47350 * 300.00154 * 16 15 14 43 43 H 1.09004 * 109.47049 * 60.00169 * 16 15 14 44 44 H 0.96997 * 119.99769 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.92103 * 265.97594 * 25 14 13 46 46 H 1.09008 * 109.91293 * 144.68122 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.4938 1.9650 2.3799 6 6 2.1677 2.5896 3.5692 7 6 0.9820 3.2920 3.6785 8 6 0.1224 3.3693 2.5987 9 6 0.4487 2.7447 1.4095 10 6 1.9954 -0.7661 -1.1376 11 1 1.7429 -0.2712 -2.0754 12 6 1.4341 -2.2065 -1.1202 13 6 2.6524 -3.0583 -1.5569 14 7 3.7968 -2.3766 -0.8998 15 6 5.0642 -2.7245 -1.5561 16 6 5.1944 -4.2466 -1.6393 17 6 6.4942 -4.6036 -2.3131 18 1 7.1610 -3.8228 -2.6482 19 6 6.8328 -5.9268 -2.5010 20 7 7.9674 -6.2382 -3.0886 21 14 5.6799 -7.2773 -1.9209 22 1 4.7332 -7.6225 -3.0117 23 1 6.4708 -8.4791 -1.5531 24 1 4.9192 -6.8039 -0.7366 25 6 3.5217 -0.9278 -1.0126 26 1 -0.3633 0.5918 -0.8402 27 1 -0.3634 -1.0234 -0.0925 28 1 -0.3634 0.4317 0.9326 29 1 1.5612 1.9273 -0.8310 30 1 3.0797 1.3443 -0.1083 31 1 3.4201 1.4162 2.2946 32 1 2.8393 2.5291 4.4129 33 1 0.7274 3.7803 4.6075 34 1 -0.8040 3.9177 2.6842 35 1 -0.2231 2.8048 0.5659 36 1 1.1104 -2.4823 -0.1167 37 1 0.6157 -2.3101 -1.8327 38 1 2.7652 -3.0411 -2.6409 39 1 2.5572 -4.0829 -1.1975 40 1 5.0805 -2.3029 -2.5612 41 1 5.8953 -2.3197 -0.9788 42 1 5.1780 -4.6682 -0.6343 43 1 4.3631 -4.6514 -2.2167 44 1 8.2057 -7.1692 -3.2205 45 1 4.0116 -0.5246 -1.8989 46 1 3.8780 -0.4117 -0.1209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081533846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:24 Heat of formation + Delta-G solvation = 17.603407 kcal Electronic energy + Delta-G solvation = -22585.890959 eV Core-core repulsion = 19474.361575 eV Total energy + Delta-G solvation = -3111.529384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80358 -39.86518 -37.55207 -35.31692 -33.59530 -32.19458 -31.73577 -30.67726 -29.50611 -27.71422 -26.19775 -24.54009 -23.37404 -23.19058 -22.01619 -21.14816 -20.80146 -19.01812 -17.64028 -17.50029 -16.79025 -16.37306 -16.25610 -16.08987 -15.84551 -15.43181 -15.00405 -14.84289 -14.70267 -14.23861 -14.09024 -13.82581 -13.58416 -13.53578 -13.42197 -13.00105 -12.90359 -12.69830 -12.53938 -12.26369 -11.98146 -11.88150 -11.85171 -11.77195 -11.72558 -11.68288 -11.52340 -11.35218 -10.77599 -9.75968 -9.66717 -9.33373 -9.18638 -8.31217 -6.35777 0.46604 0.56099 1.34683 1.37854 1.50771 2.35601 2.73903 3.04146 3.11927 3.19685 3.56768 3.77739 3.89116 3.98260 4.20659 4.22058 4.28977 4.34498 4.36136 4.40237 4.43328 4.45478 4.56129 4.65501 4.69963 4.71987 4.75166 4.83902 4.87030 4.92374 4.96565 5.01160 5.07862 5.16787 5.21076 5.21791 5.27450 5.44191 5.60935 5.61061 5.67676 5.75525 5.98859 6.10278 6.11373 6.18083 6.21160 6.28678 6.71641 7.29034 8.85518 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.002897 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.393242 B = 9661.359641 C =10027.684078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.534 5.534 3 C 0.091 3.909 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.132 4.132 7 C -0.128 4.128 8 C -0.128 4.128 9 C -0.120 4.120 10 C 0.083 3.917 11 H 0.055 0.945 12 C -0.104 4.104 13 C 0.032 3.968 14 N -0.525 5.525 15 C 0.074 3.926 16 C -0.001 4.001 17 C -0.534 4.534 18 H 0.031 0.969 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.951 3.049 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.249 1.249 25 C 0.043 3.957 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.021 0.979 44 H 0.267 0.733 45 H 0.040 0.960 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.347 19.406 10.122 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.258 5.258 3 C -0.036 4.036 4 C -0.085 4.085 5 C -0.135 4.135 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.145 4.145 9 C -0.138 4.138 10 C -0.026 4.026 11 H 0.073 0.927 12 C -0.142 4.142 13 C -0.096 4.096 14 N -0.249 5.249 15 C -0.054 4.054 16 C -0.039 4.039 17 C -0.573 4.573 18 H 0.050 0.950 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.774 3.226 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.172 1.172 25 C -0.085 4.085 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.018 18.885 11.023 30.330 hybrid contribution 0.261 -0.190 -1.664 1.695 sum -20.758 18.695 9.358 29.461 Atomic orbital electron populations 1.22468 0.86290 1.02502 1.01200 1.62068 1.08827 1.12663 1.42260 1.21089 1.00673 0.87823 0.93972 1.19792 0.95322 0.97980 0.95436 1.21189 0.99935 0.99056 0.93296 1.21407 0.97842 0.97866 0.97842 1.21455 0.94341 0.99238 0.99613 1.21410 1.00389 0.99723 0.93017 1.21230 0.96115 0.97797 0.98659 1.22415 0.93547 0.94741 0.91889 0.92677 1.22555 0.96525 0.92331 1.02779 1.23224 0.90564 0.99112 0.96677 1.64810 1.01986 1.05971 1.52179 1.21999 0.91324 0.96812 0.95241 1.19469 0.94912 0.93322 0.96160 1.21405 1.04774 0.92699 1.38372 0.95027 1.25989 0.96849 1.01605 0.94632 1.70063 1.24868 1.19187 1.44943 0.85637 0.79006 0.77804 0.80113 1.18851 1.20833 1.17231 1.22966 0.95454 0.89302 1.00775 0.94786 0.90728 0.91161 0.93239 0.90294 0.86503 0.84939 0.84270 0.84119 0.85246 0.89892 0.89131 0.94229 0.90758 0.96092 0.92364 0.96233 0.96078 0.92398 0.94185 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.80 127.69 1.12 1.51 16 2 N -0.53 -11.07 4.52 -896.42 -4.06 -15.13 16 3 C 0.09 1.74 4.90 85.56 0.42 2.16 16 4 C -0.08 -1.61 4.89 -19.87 -0.10 -1.71 16 5 C -0.12 -2.32 9.70 22.27 0.22 -2.11 16 6 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 7 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 8 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 9 C -0.12 -1.90 8.08 22.27 0.18 -1.72 16 10 C 0.08 1.88 2.73 45.80 0.12 2.00 16 11 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 12 C -0.10 -2.39 5.32 31.80 0.17 -2.22 16 13 C 0.03 0.99 5.11 86.65 0.44 1.43 16 14 N -0.53 -18.35 5.40 -883.01 -4.76 -23.12 16 15 C 0.07 3.12 4.97 86.30 0.43 3.55 16 16 C 0.00 -0.05 3.70 29.85 0.11 0.06 16 17 C -0.53 -31.69 9.66 25.60 0.25 -31.45 16 18 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 19 C 0.01 0.37 5.47 84.65 0.46 0.83 16 20 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 21 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 25 C 0.04 1.22 5.78 86.45 0.50 1.72 16 26 H 0.03 0.49 8.08 -2.39 -0.02 0.47 16 27 H 0.07 1.20 6.39 -2.39 -0.02 1.18 16 28 H 0.07 1.18 6.50 -2.39 -0.02 1.16 16 29 H 0.05 0.84 8.02 -2.39 -0.02 0.82 16 30 H 0.08 1.60 6.31 -2.39 -0.02 1.59 16 31 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.13 1.65 8.02 -2.91 -0.02 1.62 16 36 H 0.08 1.97 7.49 -2.39 -0.02 1.96 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.25 8.00 -2.39 -0.02 1.23 16 39 H 0.07 2.40 7.65 -2.39 -0.02 2.38 16 40 H 0.02 0.89 7.81 -2.38 -0.02 0.87 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 43 H 0.02 0.99 6.22 -2.38 -0.01 0.97 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.04 1.14 7.57 -2.39 -0.02 1.12 16 46 H 0.08 2.34 6.70 -2.38 -0.02 2.33 16 Total: -1.00 -68.12 356.25 -0.77 -68.89 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.87 Total: 13.73 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 5.00 Total: -31.24 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -8.52 Total: -98.48 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -68.12 -0.77 -68.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081533846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.492 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds