Wall clock time and date at job start Fri Apr 10 2020 19:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00067 * 2 1 4 4 C 1.53005 * 109.47205 * 270.00730 * 3 2 1 5 5 N 1.46899 * 109.46870 * 181.33812 * 4 3 2 6 6 C 1.46900 * 111.00115 * 76.25458 * 5 4 3 7 7 C 1.50699 * 109.47119 * 189.99868 * 6 5 4 8 8 H 1.08001 * 120.00409 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00554 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99432 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00587 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47110 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46963 * 120.00087 * 11 9 7 14 14 H 1.48501 * 109.47229 * 240.00058 * 11 9 7 15 15 C 1.46903 * 110.99958 * 200.21057 * 5 4 3 16 16 C 1.52999 * 109.46886 * 76.57283 * 15 5 4 17 17 C 1.53000 * 117.50118 * 244.80133 * 16 15 5 18 18 C 1.53005 * 60.00135 * 252.51234 * 17 16 15 19 19 C 1.39675 * 120.00546 * 180.02562 * 2 1 3 20 20 C 1.38905 * 120.07920 * 179.72037 * 19 2 1 21 21 C 1.38104 * 119.92643 * 179.76519 * 20 19 2 22 22 C 1.38285 * 120.07336 * 0.50598 * 21 20 19 23 23 C 1.38283 * 120.14953 * 359.74479 * 22 21 20 24 24 C 1.38108 * 120.07396 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47644 * 89.99515 * 1 2 3 26 26 H 1.08997 * 109.46982 * 209.99732 * 1 2 3 27 27 H 1.08997 * 109.47520 * 329.99474 * 1 2 3 28 28 H 1.08998 * 109.47360 * 150.00533 * 3 2 1 29 29 H 1.09006 * 109.46718 * 30.00494 * 3 2 1 30 30 H 1.08996 * 109.47317 * 61.33654 * 4 3 2 31 31 H 1.09001 * 109.46779 * 301.33206 * 4 3 2 32 32 H 1.08989 * 109.47487 * 309.99920 * 6 5 4 33 33 H 1.09004 * 109.46884 * 70.00418 * 6 5 4 34 34 H 0.97000 * 119.99777 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46993 * 196.57280 * 15 5 4 36 36 H 1.09001 * 109.46929 * 316.57682 * 15 5 4 37 37 H 1.09005 * 115.55101 * 30.51659 * 16 15 5 38 38 H 1.08995 * 117.49320 * 0.02562 * 17 16 15 39 39 H 1.08994 * 117.49453 * 145.02389 * 17 16 15 40 40 H 1.08994 * 117.50258 * 252.50609 * 18 17 16 41 41 H 1.09007 * 117.49641 * 107.48812 * 18 17 16 42 42 H 1.07999 * 120.03566 * 0.02562 * 20 19 2 43 43 H 1.07995 * 119.96520 * 180.25724 * 21 20 19 44 44 H 1.08002 * 119.92903 * 179.72455 * 22 21 20 45 45 H 1.08007 * 119.96628 * 179.97438 * 23 22 21 46 46 H 1.08007 * 120.03240 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4523 1.7105 -1.4425 5 7 3.2147 2.9662 -1.4426 6 6 4.6288 2.7236 -1.1273 7 6 5.3246 4.0400 -0.8947 8 1 4.7716 4.9644 -0.9729 9 6 6.6672 4.0644 -0.5822 10 7 7.3409 2.9388 -0.4875 11 14 7.5299 5.6961 -0.2946 12 1 6.5573 6.8061 -0.4598 13 1 8.0856 5.7263 1.0822 14 1 8.6324 5.8530 -1.2770 15 6 3.0742 3.6674 -2.7258 16 6 1.7047 4.3467 -2.7885 17 6 0.7168 3.8490 -3.8454 18 6 1.3988 5.2080 -4.0155 19 6 2.1634 -1.2096 -0.0005 20 6 3.5525 -1.2113 -0.0064 21 6 4.2399 -2.4091 -0.0020 22 6 3.5470 -3.6058 -0.0024 23 6 2.1642 -3.6077 -0.0018 24 6 1.4705 -2.4135 -0.0014 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.1499 1.1384 0.5137 29 1 1.6083 2.0284 0.5140 30 1 1.4996 1.8639 -1.9493 31 1 3.0211 0.9402 -1.9633 32 1 4.7008 2.1109 -0.2288 33 1 5.1028 2.2043 -1.9602 34 1 8.2855 2.9559 -0.2680 35 1 3.8575 4.4198 -2.8164 36 1 3.1621 2.9511 -3.5427 37 1 1.2968 4.6717 -1.8312 38 1 1.0424 3.0372 -4.4959 39 1 -0.3412 3.8462 -3.5836 40 1 0.7895 6.0992 -3.8657 41 1 2.1732 5.2905 -4.7782 42 1 4.0942 -0.2771 -0.0101 43 1 5.3199 -2.4112 -0.0024 44 1 4.0870 -4.5412 -0.0034 45 1 1.6259 -4.5441 -0.0025 46 1 0.3904 -2.4157 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085821748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:36 Heat of formation + Delta-G solvation = 63.623708 kcal Electronic energy + Delta-G solvation = -23026.658185 eV Core-core repulsion = 19917.124390 eV Total energy + Delta-G solvation = -3109.533794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.41050 -37.89318 -36.34284 -35.13363 -32.53190 -30.94885 -29.97808 -28.95248 -27.43332 -26.00207 -24.38978 -22.86674 -22.11683 -21.79943 -20.83998 -20.04606 -19.63791 -17.47140 -16.48764 -15.72235 -15.34893 -15.11756 -14.97296 -14.54474 -14.28510 -14.09711 -13.69425 -13.54844 -13.48562 -13.02006 -12.68422 -12.39828 -12.21096 -11.92850 -11.74305 -11.68622 -11.50059 -11.25471 -11.17272 -10.95765 -10.71258 -10.66323 -10.54518 -10.33137 -10.11415 -9.75544 -9.50159 -9.49418 -9.14023 -8.66019 -8.44908 -7.33077 -7.00697 -6.04234 -4.05376 1.70239 1.86849 3.29999 3.32647 3.38004 3.42618 4.11853 4.16497 4.42039 4.79819 5.04393 5.12251 5.18219 5.25175 5.25929 5.31911 5.39701 5.44782 5.48664 5.56543 5.71272 5.75359 5.79271 5.80611 5.86212 5.88221 5.98604 6.05772 6.10144 6.21747 6.31115 6.31824 6.34525 6.43909 6.50878 6.62635 6.74587 6.80196 6.92162 7.13481 7.23934 7.33837 7.52978 7.76955 7.80610 8.06490 8.18875 8.52779 9.02978 9.59128 11.06486 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005165 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.509945 B = 5419.391964 C = 7441.877646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.630 5.630 3 C 0.128 3.872 4 C 0.042 3.958 5 N -0.533 5.533 6 C 0.193 3.807 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.093 3.907 16 C -0.130 4.130 17 C -0.191 4.191 18 C -0.184 4.184 19 C 0.220 3.780 20 C -0.190 4.190 21 C -0.071 4.071 22 C -0.187 4.187 23 C -0.079 4.079 24 C -0.207 4.207 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.031 0.969 33 H -0.010 1.010 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 -7.144 -1.374 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.341 5.341 3 C 0.005 3.995 4 C -0.088 4.088 5 N -0.258 5.258 6 C 0.068 3.932 7 C -0.546 4.546 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.036 4.036 16 C -0.149 4.149 17 C -0.229 4.229 18 C -0.221 4.221 19 C 0.117 3.883 20 C -0.212 4.212 21 C -0.089 4.089 22 C -0.208 4.208 23 C -0.098 4.098 24 C -0.229 4.229 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.008 0.992 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.418 -6.726 -0.954 15.039 hybrid contribution 0.887 0.304 -0.550 1.088 sum -12.530 -6.422 -1.505 14.160 Atomic orbital electron populations 1.21574 0.80201 1.02159 1.00777 1.46551 1.04631 1.03328 1.79546 1.21484 0.97463 0.83266 0.97255 1.22400 0.97994 0.92024 0.96397 1.61951 1.14415 1.19375 1.30013 1.19772 0.80790 0.97191 0.95490 1.21203 0.93614 0.92889 1.46923 0.91722 1.24979 0.97488 0.96440 0.95605 1.69968 1.08862 1.25742 1.49056 0.86486 0.79499 0.83971 0.77750 1.19636 1.21036 1.21159 1.21563 0.94733 0.97283 0.89993 1.22450 0.96947 1.01818 0.93676 1.23001 0.98002 0.97665 1.04184 1.22893 1.03506 0.94137 1.01606 1.17882 0.91327 0.85701 0.93346 1.20947 0.92317 0.99366 1.08550 1.20951 0.99660 0.91927 0.96394 1.20846 0.94209 0.97645 1.08053 1.20790 0.94222 0.96856 0.97942 1.20610 0.99222 0.91274 1.11816 0.93824 0.91810 0.91605 0.90039 0.90434 0.92078 0.95551 0.95083 0.99236 0.92987 0.89070 0.96186 0.87418 0.89505 0.89612 0.89309 0.89118 0.85277 0.86218 0.86946 0.86799 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.23 59.84 0.61 1.69 16 2 N -0.63 -9.22 3.01 -179.62 -0.54 -9.76 16 3 C 0.13 2.12 5.33 -4.04 -0.02 2.09 16 4 C 0.04 0.75 5.13 -3.82 -0.02 0.73 16 5 N -0.53 -10.96 4.35 -236.07 -1.03 -11.98 16 6 C 0.19 4.83 4.54 -4.98 -0.02 4.80 16 7 C -0.51 -13.82 8.22 -34.44 -0.28 -14.10 16 8 H 0.06 1.75 7.32 -52.49 -0.38 1.37 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 11 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.09 1.76 5.06 -3.82 -0.02 1.74 16 16 C -0.13 -2.04 5.22 -90.62 -0.47 -2.51 16 17 C -0.19 -2.54 10.04 -26.73 -0.27 -2.81 16 18 C -0.18 -2.47 10.25 -26.73 -0.27 -2.74 16 19 C 0.22 3.41 6.55 -83.79 -0.55 2.86 16 20 C -0.19 -3.19 9.20 -39.38 -0.36 -3.55 16 21 C -0.07 -1.07 10.04 -39.61 -0.40 -1.47 16 22 C -0.19 -2.52 10.04 -39.55 -0.40 -2.91 16 23 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 24 C -0.21 -2.80 9.21 -39.38 -0.36 -3.17 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.62 6.20 -51.93 -0.32 0.30 16 27 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 28 H 0.08 1.52 4.85 -51.93 -0.25 1.27 16 29 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 30 H 0.06 1.01 7.21 -51.93 -0.37 0.64 16 31 H 0.03 0.52 7.99 -51.93 -0.41 0.10 16 32 H 0.03 0.82 6.64 -51.94 -0.35 0.48 16 33 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 35 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 36 H 0.02 0.38 7.72 -51.93 -0.40 -0.02 16 37 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.13 2.42 6.15 -52.49 -0.32 2.10 16 43 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.12 1.34 6.14 -52.48 -0.32 1.02 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -28.95 368.02 -11.29 -40.25 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.66 Total: 4.33 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -3.33 Total: -19.30 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.83 Total: -47.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.95 -11.29 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085821748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.870 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds