Wall clock time and date at job start Fri Apr 10 2020 19:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00067 * 2 1 4 4 C 1.53005 * 109.47205 * 270.00730 * 3 2 1 5 5 N 1.46899 * 109.46870 * 181.33812 * 4 3 2 6 6 C 1.46900 * 111.00115 * 76.25458 * 5 4 3 7 7 C 1.50699 * 109.47119 * 189.99868 * 6 5 4 8 8 H 1.08001 * 120.00409 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00554 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99432 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00587 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47110 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46963 * 120.00087 * 11 9 7 14 14 H 1.48501 * 109.47229 * 240.00058 * 11 9 7 15 15 C 1.46903 * 110.99958 * 200.21057 * 5 4 3 16 16 C 1.52999 * 109.46886 * 76.57283 * 15 5 4 17 17 C 1.53000 * 117.50118 * 244.80133 * 16 15 5 18 18 C 1.53005 * 60.00135 * 252.51234 * 17 16 15 19 19 C 1.39675 * 120.00546 * 180.02562 * 2 1 3 20 20 C 1.38905 * 120.07920 * 179.72037 * 19 2 1 21 21 C 1.38104 * 119.92643 * 179.76519 * 20 19 2 22 22 C 1.38285 * 120.07336 * 0.50598 * 21 20 19 23 23 C 1.38283 * 120.14953 * 359.74479 * 22 21 20 24 24 C 1.38108 * 120.07396 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47644 * 89.99515 * 1 2 3 26 26 H 1.08997 * 109.46982 * 209.99732 * 1 2 3 27 27 H 1.08997 * 109.47520 * 329.99474 * 1 2 3 28 28 H 1.08998 * 109.47360 * 150.00533 * 3 2 1 29 29 H 1.09006 * 109.46718 * 30.00494 * 3 2 1 30 30 H 1.08996 * 109.47317 * 61.33654 * 4 3 2 31 31 H 1.09001 * 109.46779 * 301.33206 * 4 3 2 32 32 H 1.08989 * 109.47487 * 309.99920 * 6 5 4 33 33 H 1.09004 * 109.46884 * 70.00418 * 6 5 4 34 34 H 0.97000 * 119.99777 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46993 * 196.57280 * 15 5 4 36 36 H 1.09001 * 109.46929 * 316.57682 * 15 5 4 37 37 H 1.09005 * 115.55101 * 30.51659 * 16 15 5 38 38 H 1.08995 * 117.49320 * 0.02562 * 17 16 15 39 39 H 1.08994 * 117.49453 * 145.02389 * 17 16 15 40 40 H 1.08994 * 117.50258 * 252.50609 * 18 17 16 41 41 H 1.09007 * 117.49641 * 107.48812 * 18 17 16 42 42 H 1.07999 * 120.03566 * 0.02562 * 20 19 2 43 43 H 1.07995 * 119.96520 * 180.25724 * 21 20 19 44 44 H 1.08002 * 119.92903 * 179.72455 * 22 21 20 45 45 H 1.08007 * 119.96628 * 179.97438 * 23 22 21 46 46 H 1.08007 * 120.03240 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4523 1.7105 -1.4425 5 7 3.2147 2.9662 -1.4426 6 6 4.6288 2.7236 -1.1273 7 6 5.3246 4.0400 -0.8947 8 1 4.7716 4.9644 -0.9729 9 6 6.6672 4.0644 -0.5822 10 7 7.3409 2.9388 -0.4875 11 14 7.5299 5.6961 -0.2946 12 1 6.5573 6.8061 -0.4598 13 1 8.0856 5.7263 1.0822 14 1 8.6324 5.8530 -1.2770 15 6 3.0742 3.6674 -2.7258 16 6 1.7047 4.3467 -2.7885 17 6 0.7168 3.8490 -3.8454 18 6 1.3988 5.2080 -4.0155 19 6 2.1634 -1.2096 -0.0005 20 6 3.5525 -1.2113 -0.0064 21 6 4.2399 -2.4091 -0.0020 22 6 3.5470 -3.6058 -0.0024 23 6 2.1642 -3.6077 -0.0018 24 6 1.4705 -2.4135 -0.0014 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.1499 1.1384 0.5137 29 1 1.6083 2.0284 0.5140 30 1 1.4996 1.8639 -1.9493 31 1 3.0211 0.9402 -1.9633 32 1 4.7008 2.1109 -0.2288 33 1 5.1028 2.2043 -1.9602 34 1 8.2855 2.9559 -0.2680 35 1 3.8575 4.4198 -2.8164 36 1 3.1621 2.9511 -3.5427 37 1 1.2968 4.6717 -1.8312 38 1 1.0424 3.0372 -4.4959 39 1 -0.3412 3.8462 -3.5836 40 1 0.7895 6.0992 -3.8657 41 1 2.1732 5.2905 -4.7782 42 1 4.0942 -0.2771 -0.0101 43 1 5.3199 -2.4112 -0.0024 44 1 4.0870 -4.5412 -0.0034 45 1 1.6259 -4.5441 -0.0025 46 1 0.3904 -2.4157 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085821748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:35 Heat of formation + Delta-G solvation = 48.881107 kcal Electronic energy + Delta-G solvation = -23027.297472 eV Core-core repulsion = 19917.124390 eV Total energy + Delta-G solvation = -3110.173082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58251 -39.32084 -37.54028 -36.56167 -34.60886 -32.14365 -31.24313 -30.15520 -29.34363 -27.28753 -25.92733 -24.45571 -23.18570 -23.00251 -22.31615 -21.27847 -21.12057 -18.79556 -18.40731 -17.05161 -16.86637 -16.44190 -16.29679 -15.93225 -15.74792 -15.38207 -15.00282 -14.93185 -14.70835 -14.37489 -14.14896 -13.90795 -13.53329 -13.44761 -13.36363 -12.98247 -12.81973 -12.71618 -12.57153 -12.32501 -12.25217 -12.16595 -12.08792 -11.82251 -11.59242 -11.28870 -11.09403 -10.75571 -10.69984 -10.56776 -9.80182 -9.10496 -8.21020 -8.17635 -6.30756 0.56094 0.74023 1.39662 1.40434 1.53983 2.16751 2.40098 2.95163 3.02598 3.11364 3.31177 3.89009 3.95190 4.04024 4.09837 4.14692 4.20769 4.28605 4.33152 4.40406 4.46603 4.56815 4.63636 4.64777 4.73173 4.77995 4.79871 4.85442 4.89133 4.92523 4.93894 5.04090 5.06735 5.18929 5.20515 5.26056 5.29936 5.42756 5.43137 5.64855 5.65486 5.78246 6.02313 6.05631 6.29934 6.38111 6.61763 6.63511 6.85933 7.38926 8.90342 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.005165 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.509945 B = 5419.391964 C = 7441.877646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.633 5.633 3 C 0.140 3.860 4 C 0.055 3.945 5 N -0.531 5.531 6 C 0.212 3.788 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.096 3.904 16 C -0.150 4.150 17 C -0.172 4.172 18 C -0.172 4.172 19 C 0.204 3.796 20 C -0.223 4.223 21 C -0.088 4.088 22 C -0.187 4.187 23 C -0.073 4.073 24 C -0.203 4.203 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.000 1.000 32 H 0.007 0.993 33 H -0.049 1.049 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.196 -7.260 -1.615 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.344 5.344 3 C 0.016 3.984 4 C -0.075 4.075 5 N -0.255 5.255 6 C 0.086 3.914 7 C -0.558 4.558 8 H 0.083 0.917 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.185 1.185 13 H -0.205 1.205 14 H -0.206 1.206 15 C -0.032 4.032 16 C -0.169 4.169 17 C -0.209 4.209 18 C -0.210 4.210 19 C 0.102 3.898 20 C -0.245 4.245 21 C -0.106 4.106 22 C -0.207 4.207 23 C -0.092 4.092 24 C -0.225 4.225 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.018 0.982 32 H 0.025 0.975 33 H -0.031 1.031 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.170 0.830 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.349 -6.846 -1.204 17.765 hybrid contribution 1.766 0.249 -0.508 1.855 sum -14.582 -6.597 -1.712 16.096 Atomic orbital electron populations 1.21813 0.77571 1.03795 1.01837 1.46597 1.06027 1.02132 1.79650 1.21184 0.96599 0.84790 0.95808 1.22356 0.97736 0.89891 0.97484 1.61939 1.11621 1.20763 1.31214 1.19361 0.83356 0.95719 0.92943 1.21479 0.94184 0.93383 1.46760 0.91711 1.25900 0.98287 1.00213 0.95166 1.70110 1.09257 1.28178 1.49911 0.85368 0.78297 0.79455 0.77728 1.18523 1.20460 1.20563 1.21507 0.96520 0.96357 0.88826 1.22184 0.95565 1.04233 0.94922 1.23065 0.98540 0.97427 1.01824 1.23003 1.03396 0.95116 0.99475 1.18075 0.90825 0.86970 0.93898 1.20828 0.93573 0.98518 1.11601 1.21084 0.99881 0.92482 0.97203 1.21161 0.95052 0.97564 1.06944 1.21262 0.93959 0.98132 0.95823 1.20956 1.00636 0.90434 1.10508 0.92894 0.89879 0.90357 0.93399 0.89278 0.89864 0.98200 0.97475 1.03120 0.92791 0.91944 0.96758 0.87612 0.89663 0.87187 0.87160 0.89304 0.89083 0.86510 0.84394 0.82995 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 10.23 127.77 1.31 3.12 16 2 N -0.63 -18.48 3.01 -722.20 -2.17 -20.65 16 3 C 0.14 4.86 5.33 86.38 0.46 5.32 16 4 C 0.06 2.06 5.13 86.31 0.44 2.50 16 5 N -0.53 -23.09 4.35 -900.80 -3.92 -27.00 16 6 C 0.21 11.53 4.54 85.56 0.39 11.92 16 7 C -0.52 -29.67 8.22 25.60 0.21 -29.46 16 8 H 0.06 3.63 7.32 -2.91 -0.02 3.60 16 9 C 0.00 0.13 5.46 84.65 0.46 0.60 16 10 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 11 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 C 0.10 3.80 5.06 86.30 0.44 4.23 16 16 C -0.15 -4.57 5.22 -10.79 -0.06 -4.63 16 17 C -0.17 -4.10 10.04 30.60 0.31 -3.79 16 18 C -0.17 -4.25 10.25 30.60 0.31 -3.94 16 19 C 0.20 6.42 6.55 38.21 0.25 6.67 16 20 C -0.22 -8.14 9.20 22.40 0.21 -7.94 16 21 C -0.09 -2.82 10.04 22.25 0.22 -2.60 16 22 C -0.19 -4.81 10.04 22.29 0.22 -4.58 16 23 C -0.07 -1.66 10.04 22.25 0.22 -1.44 16 24 C -0.20 -5.05 9.21 22.40 0.21 -4.84 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.33 6.20 -2.39 -0.01 1.31 16 27 H 0.08 1.36 7.89 -2.39 -0.02 1.34 16 28 H 0.05 1.98 4.85 -2.39 -0.01 1.97 16 29 H 0.09 2.84 7.89 -2.38 -0.02 2.82 16 30 H 0.08 2.73 7.21 -2.39 -0.02 2.71 16 31 H 0.00 -0.01 7.99 -2.39 -0.02 -0.03 16 32 H 0.01 0.42 6.64 -2.39 -0.02 0.41 16 33 H -0.05 -2.97 8.12 -2.39 -0.02 -2.98 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.06 2.79 6.58 -2.39 -0.02 2.77 16 36 H 0.01 0.57 7.72 -2.39 -0.02 0.55 16 37 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.09 3.95 6.15 -2.91 -0.02 3.93 16 43 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 45 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 46 H 0.15 2.74 6.14 -2.91 -0.02 2.72 16 Total: -1.00 -67.00 368.02 2.77 -64.23 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.94 Total: 22.31 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 5.61 Total: -28.84 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.80 Total: -104.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.00 2.77 -64.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085821748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.112 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds