Wall clock time and date at job start Fri Apr 10 2020 19:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 C 1.38234 * 119.99770 * 269.72838 * 5 4 2 7 7 C 1.38239 * 119.99901 * 179.76875 * 6 5 4 8 8 C 1.38240 * 119.99645 * 0.50240 * 7 6 5 9 9 C 1.50698 * 119.99659 * 179.72727 * 8 7 6 10 10 H 1.08996 * 109.46813 * 160.02550 * 9 8 7 11 11 C 1.53003 * 109.47156 * 280.02259 * 9 8 7 12 12 N 1.46496 * 109.47170 * 40.02325 * 9 8 7 13 13 C 1.34780 * 120.00143 * 154.99888 * 12 9 8 14 14 O 1.21293 * 119.99808 * 0.02562 * 13 12 9 15 15 C 1.50690 * 120.00461 * 179.97438 * 13 12 9 16 16 C 1.50698 * 109.47616 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99696 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00566 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00178 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46753 * 60.00781 * 20 18 16 22 22 H 1.48507 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47355 * 300.00389 * 20 18 16 24 24 C 1.38227 * 120.00205 * 359.74956 * 8 7 6 25 25 C 1.38232 * 119.99860 * 90.00280 * 5 4 2 26 26 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 28 28 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 29 29 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 30 30 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 32 32 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 33 33 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 34 34 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 35 35 H 1.08001 * 120.00330 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.99843 * 180.23314 * 7 6 5 37 37 H 1.09000 * 109.47306 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47042 * 300.00536 * 11 9 8 39 39 H 1.08996 * 109.47022 * 60.00419 * 11 9 8 40 40 H 0.96999 * 120.00479 * 334.99897 * 12 9 8 41 41 H 1.09005 * 109.47439 * 299.99944 * 15 13 12 42 42 H 1.09002 * 109.47025 * 59.99875 * 15 13 12 43 43 H 0.96998 * 119.99887 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.00251 * 179.97438 * 24 8 7 45 45 H 1.07998 * 120.00407 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 6 0.4381 -2.5829 1.7324 7 6 0.0703 -3.9141 1.6728 8 6 0.9104 -4.8373 1.0789 9 6 0.5122 -6.2895 1.0193 10 1 1.0842 -6.7914 0.2390 11 6 0.7987 -6.9526 2.3681 12 7 -0.9180 -6.3918 0.7190 13 6 -1.4054 -7.5021 0.1306 14 8 -0.6599 -8.4169 -0.1498 15 6 -2.8766 -7.6076 -0.1779 16 6 -3.1593 -8.9366 -0.8296 17 1 -2.3541 -9.6353 -1.0027 18 6 -4.4460 -9.2612 -1.2040 19 7 -5.4266 -8.4106 -0.9928 20 14 -4.7962 -10.9083 -2.0124 21 1 -4.4031 -12.0051 -1.0917 22 1 -6.2461 -11.0123 -2.3163 23 1 -4.0178 -11.0168 -3.2724 24 6 2.1159 -4.4286 0.5400 25 6 2.4815 -3.0965 0.5951 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1263 -0.6442 1.2952 34 1 1.6053 -0.2617 2.1370 35 1 -0.2161 -1.8623 2.2006 36 1 -0.8715 -4.2334 2.0941 37 1 0.5111 -8.0031 2.3250 38 1 1.8628 -6.8765 2.5916 39 1 0.2267 -6.4508 3.1485 40 1 -1.5143 -5.6604 0.9435 41 1 -3.4485 -7.5269 0.7466 42 1 -3.1645 -6.8030 -0.8546 43 1 -6.3317 -8.6388 -1.2565 44 1 2.7725 -5.1500 0.0764 45 1 3.4237 -2.7773 0.1747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:35:46 Heat of formation + Delta-G solvation = -48.207538 kcal Electronic energy + Delta-G solvation = -22334.972218 eV Core-core repulsion = 19122.870394 eV Total energy + Delta-G solvation = -3212.101823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02415 -38.61563 -36.71959 -34.75821 -32.89606 -31.62633 -30.99008 -29.93809 -28.38517 -27.40067 -26.50924 -23.92615 -23.05046 -22.42317 -20.66678 -20.13261 -19.44320 -16.94327 -16.38558 -15.94122 -15.57176 -15.12475 -14.97077 -14.57846 -14.45715 -14.25480 -14.17248 -13.65878 -13.46656 -13.16387 -12.82443 -12.71785 -12.46992 -12.36588 -12.13996 -12.03561 -11.92208 -11.58452 -11.22061 -11.16200 -11.11817 -10.93110 -10.87739 -10.78149 -10.62597 -10.55453 -9.93377 -9.26187 -8.95529 -8.75048 -8.52033 -8.43758 -8.37220 -6.03451 -4.02803 1.25442 1.35664 3.38976 3.40842 3.46282 3.62240 3.75854 3.99103 4.48987 4.51180 4.56567 4.70661 4.74524 4.83619 4.95436 5.05317 5.20891 5.34635 5.35650 5.37415 5.44110 5.47344 5.52673 5.55543 5.59358 5.64450 5.71118 5.79532 5.84305 5.95685 6.01833 6.05568 6.06537 6.10470 6.31119 6.37070 6.43084 6.53986 6.61864 6.94580 7.10256 7.22816 7.35692 7.98227 8.08609 8.46970 9.07733 9.26541 9.62114 11.09004 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.002965 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.823449 B = 9440.175760 C =10210.853812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.075 4.075 5 C -0.085 4.085 6 C -0.112 4.112 7 C -0.110 4.110 8 C -0.085 4.085 9 C 0.180 3.820 10 H 0.090 0.910 11 C -0.155 4.155 12 N -0.743 5.743 13 C 0.516 3.484 14 O -0.546 6.546 15 C 0.005 3.995 16 C -0.507 4.507 17 H 0.074 0.926 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.108 4.108 25 C -0.116 4.116 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.394 0.606 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.262 0.738 44 H 0.122 0.878 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.802 19.059 6.411 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.085 4.085 6 C -0.130 4.130 7 C -0.129 4.129 8 C -0.085 4.085 9 C 0.075 3.925 10 H 0.108 0.892 11 C -0.214 4.214 12 N -0.398 5.398 13 C 0.306 3.694 14 O -0.422 6.422 15 C -0.034 4.034 16 C -0.546 4.546 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.126 4.126 25 C -0.134 4.134 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.229 0.771 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.139 18.383 6.168 24.600 hybrid contribution -0.608 -0.423 -0.294 0.797 sum 14.531 17.960 5.874 23.837 Atomic orbital electron populations 1.21926 0.94980 1.02496 1.01499 1.21088 0.96315 0.95685 0.97941 1.21855 1.00807 0.95996 1.01812 1.20670 1.00912 0.91246 0.98385 1.19822 0.94839 0.95321 0.98545 1.20990 0.96243 0.95622 1.00169 1.20968 0.99546 0.92981 0.99371 1.20049 0.94999 0.95296 0.98180 1.19660 0.84188 0.90804 0.97898 0.89182 1.22147 1.01164 1.01732 0.96315 1.46483 1.07573 1.20855 1.64880 1.22008 0.93055 0.80086 0.74224 1.90529 1.60777 1.38519 1.52377 1.19230 0.85380 0.99967 0.98817 1.21128 0.93949 1.00969 1.38535 0.90749 1.25008 0.96085 0.97504 0.96042 1.69951 1.00371 1.35698 1.48127 0.86485 0.76737 0.83830 0.79965 1.20130 1.21381 1.20138 1.20998 0.96294 0.95950 0.99370 1.20962 0.99574 0.92851 1.00035 0.91872 0.92818 0.92862 0.91101 0.92787 0.92637 0.92705 0.91196 0.91112 0.86154 0.85951 0.91462 0.92247 0.92593 0.77122 0.93510 0.93530 0.92878 0.85960 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.78 37.15 0.33 -0.91 16 2 C -0.09 -0.69 2.91 -90.62 -0.26 -0.96 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.58 16 4 C -0.07 -0.57 4.84 -27.88 -0.13 -0.71 16 5 C -0.09 -0.83 4.70 -104.62 -0.49 -1.32 16 6 C -0.11 -1.15 7.98 -39.58 -0.32 -1.47 16 7 C -0.11 -1.29 9.06 -39.58 -0.36 -1.65 16 8 C -0.08 -1.09 4.95 -104.63 -0.52 -1.60 16 9 C 0.18 2.74 2.78 -69.08 -0.19 2.54 16 10 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 11 C -0.16 -2.18 9.46 37.16 0.35 -1.82 16 12 N -0.74 -13.03 5.03 -54.94 -0.28 -13.30 16 13 C 0.52 11.85 7.79 -10.99 -0.09 11.76 16 14 O -0.55 -14.26 15.12 5.55 0.08 -14.18 16 15 C 0.01 0.14 5.46 -29.04 -0.16 -0.02 16 16 C -0.51 -14.89 8.92 -34.44 -0.31 -15.20 16 17 H 0.07 2.27 6.75 -52.48 -0.35 1.92 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 25 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 26 H 0.06 0.60 6.28 -51.93 -0.33 0.27 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 36 H 0.12 1.33 6.92 -52.49 -0.36 0.97 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 6.02 6.87 -40.82 -0.28 5.74 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -32.39 368.40 -9.20 -41.59 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.60 Total: 2.60 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.67 Total: -13.66 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.46 Total: -39.25 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.39 -9.20 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.621 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds