Wall clock time and date at job start Fri Apr 10 2020 19:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.48215 * 2 1 4 4 C 1.53087 * 109.48068 * 120.02406 * 2 1 3 5 5 C 1.53174 * 109.16652 * 62.38190 * 4 2 1 6 6 H 1.09002 * 109.54404 * 297.02398 * 5 4 2 7 7 N 1.46899 * 109.54548 * 176.84636 * 5 4 2 8 8 C 1.46894 * 111.00245 * 288.97428 * 7 5 4 9 9 C 1.50700 * 109.47477 * 164.04536 * 8 7 5 10 10 H 1.08000 * 119.99564 * 358.48935 * 9 8 7 11 11 C 1.37878 * 120.00181 * 178.49302 * 9 8 7 12 12 N 1.31515 * 119.99721 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00008 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47029 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47375 * 299.99944 * 13 11 9 16 16 H 1.48500 * 109.47155 * 59.99969 * 13 11 9 17 17 C 1.46901 * 111.00264 * 165.01637 * 7 5 4 18 18 C 1.50700 * 109.47259 * 293.95787 * 17 7 5 19 19 C 1.38236 * 119.99656 * 269.72318 * 18 17 7 20 20 C 1.38236 * 119.99531 * 179.76716 * 19 18 17 21 21 C 1.38238 * 120.00103 * 0.48430 * 20 19 18 22 22 C 1.38235 * 119.99900 * 359.79332 * 21 20 19 23 23 C 1.38234 * 120.00230 * 359.95376 * 22 21 20 24 24 C 1.53179 * 109.03654 * 56.98109 * 5 4 2 25 25 C 1.53095 * 109.16103 * 303.01949 * 24 5 4 26 26 O 1.42898 * 109.48703 * 239.96992 * 2 1 3 27 27 H 1.09011 * 109.47024 * 299.97827 * 1 2 3 28 28 H 1.09002 * 109.47378 * 59.97282 * 1 2 3 29 29 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.52347 * 302.47175 * 4 2 1 31 31 H 1.09000 * 109.52239 * 182.29261 * 4 2 1 32 32 H 1.08996 * 109.47171 * 44.04478 * 8 7 5 33 33 H 1.08998 * 109.47100 * 284.04492 * 8 7 5 34 34 H 0.97008 * 119.99790 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.46730 * 53.95634 * 17 7 5 36 36 H 1.09000 * 109.47543 * 173.95373 * 17 7 5 37 37 H 1.07994 * 120.00416 * 359.97438 * 19 18 17 38 38 H 1.08003 * 120.00209 * 180.25056 * 20 19 18 39 39 H 1.08000 * 119.99984 * 179.76838 * 21 20 19 40 40 H 1.08002 * 119.99760 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99957 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.51966 * 62.92488 * 24 5 4 43 43 H 1.09000 * 109.52395 * 183.11498 * 24 5 4 44 44 H 1.08997 * 109.48195 * 297.62232 * 25 24 5 45 45 H 1.08995 * 109.47943 * 177.59133 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 1.2496 5 6 1.5759 -2.1812 1.2123 6 1 0.4869 -2.2180 1.2425 7 7 2.1242 -2.9013 2.3693 8 6 3.5723 -3.1026 2.2263 9 6 4.1618 -3.4768 3.5618 10 1 3.5285 -3.5333 4.4348 11 6 5.5096 -3.7470 3.6690 12 7 6.2806 -3.6786 2.6058 13 14 6.2404 -4.2102 5.3245 14 1 7.6980 -4.4499 5.1725 15 1 6.0183 -3.1045 6.2906 16 1 5.5859 -5.4451 5.8265 17 6 1.4320 -4.1815 2.5691 18 6 -0.0017 -3.9226 2.9544 19 6 -0.3476 -3.7983 4.2870 20 6 -1.6619 -3.5561 4.6401 21 6 -2.6320 -3.4481 3.6613 22 6 -2.2871 -3.5781 2.3290 23 6 -0.9719 -3.8152 1.9755 24 6 2.0768 -2.8322 -0.0807 25 6 1.5648 -2.0285 -1.2790 26 8 2.0067 -0.6742 -1.1663 27 1 -0.3634 0.5135 0.8903 28 1 -0.3634 0.5143 -0.8897 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6420 -0.2356 2.1399 31 1 3.1298 -0.6871 1.2711 32 1 4.0337 -2.1813 1.8708 33 1 3.7589 -3.9024 1.5098 34 1 7.2288 -3.8691 2.6812 35 1 1.4613 -4.7585 1.6447 36 1 1.9260 -4.7418 3.3628 37 1 0.4095 -3.8871 5.0520 38 1 -1.9316 -3.4549 5.6811 39 1 -3.6595 -3.2625 3.9374 40 1 -3.0451 -3.4941 1.5643 41 1 -0.7024 -3.9163 0.9346 42 1 3.1668 -2.8398 -0.0861 43 1 1.7042 -3.8547 -0.1419 44 1 0.4753 -2.0553 -1.2958 45 1 1.9534 -2.4623 -2.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168103899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:35:52 Heat of formation + Delta-G solvation = -22.010855 kcal Electronic energy + Delta-G solvation = -24251.987684 eV Core-core repulsion = 21041.021834 eV Total energy + Delta-G solvation = -3210.965850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95316 -38.83651 -36.50452 -32.78687 -32.40058 -31.72371 -30.69984 -30.30289 -27.75228 -26.92292 -24.83943 -23.21903 -22.99499 -22.21983 -21.38906 -20.20883 -18.42400 -16.69393 -16.36978 -16.06642 -15.73504 -15.16347 -14.89450 -14.77537 -14.36159 -14.25408 -13.58490 -13.54735 -13.27118 -13.09704 -12.95596 -12.53112 -12.25125 -12.04768 -12.01773 -11.71173 -11.45173 -11.32257 -10.97491 -10.90630 -10.84133 -10.68482 -10.46777 -10.43689 -10.23363 -9.93834 -9.55371 -9.24942 -9.14800 -8.65939 -8.47585 -8.38574 -7.21598 -6.02223 -4.03734 1.60043 1.64503 3.32617 3.37243 3.39700 4.00761 4.11408 4.42483 4.89717 5.04974 5.09128 5.11688 5.20315 5.21042 5.25210 5.32806 5.36038 5.40230 5.56281 5.56658 5.64913 5.72874 5.76282 5.79551 5.91393 5.97761 6.05781 6.13792 6.18048 6.24271 6.30909 6.38220 6.44652 6.54806 6.65610 6.68882 6.72341 6.80303 6.99671 7.24610 7.29159 7.35261 7.50005 7.81123 8.10994 8.18145 8.54484 9.03803 9.60420 11.07991 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.006710 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.159420 B = 4171.724929 C = 6058.970990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.098 0.902 4 C -0.137 4.137 5 C 0.080 3.920 6 H 0.077 0.923 7 N -0.521 5.521 8 C 0.193 3.807 9 C -0.508 4.508 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.288 1.288 15 H -0.277 1.277 16 H -0.278 1.278 17 C 0.094 3.906 18 C -0.059 4.059 19 C -0.098 4.098 20 C -0.123 4.123 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.191 4.191 25 C 0.065 3.935 26 O -0.379 6.379 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.034 0.966 33 H -0.005 1.005 34 H 0.261 0.739 35 H 0.030 0.970 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.425 2.469 -3.456 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.029 3.971 3 H 0.116 0.884 4 C -0.175 4.175 5 C -0.029 4.029 6 H 0.095 0.905 7 N -0.244 5.244 8 C 0.068 3.932 9 C -0.547 4.547 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.214 1.214 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.033 4.033 18 C -0.060 4.060 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.230 4.230 25 C -0.012 4.012 26 O -0.298 6.298 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.013 0.987 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.160 2.813 -3.211 15.749 hybrid contribution 0.489 -0.930 0.357 1.109 sum -14.671 1.884 -2.854 15.064 Atomic orbital electron populations 1.22437 0.96921 1.02582 1.02083 1.22195 0.92987 0.96292 0.85615 0.88449 1.22193 1.02786 0.95425 0.97134 1.21791 0.98959 0.93705 0.88457 0.90478 1.62320 1.06810 1.18274 1.36960 1.19771 0.80338 0.96307 0.96755 1.21139 0.92975 1.45859 0.94693 0.92035 1.24970 0.97153 0.95774 0.96592 1.69948 1.05551 1.49646 1.28562 0.86605 0.77882 0.78958 0.84226 1.21404 1.20215 1.20336 1.21011 0.89316 0.92422 1.00563 1.20098 0.95739 0.96894 0.93222 1.21125 0.95922 0.98480 0.96163 1.21122 0.93363 1.00575 0.99052 1.21019 0.98964 1.01893 0.93198 1.21020 0.96066 1.01155 0.96103 1.21052 0.92940 1.01002 0.98895 1.22923 1.03858 0.99491 0.96727 1.22478 0.97902 0.82510 0.98342 1.87944 1.73933 1.24670 1.43294 0.91604 0.92460 0.91967 0.90779 0.90273 0.94773 0.98678 0.92897 0.95173 0.88995 0.85773 0.86550 0.86809 0.86766 0.86799 0.89680 0.91766 0.93619 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.65 37.16 0.32 -1.91 16 2 C 0.09 1.27 3.91 -26.69 -0.10 1.16 16 3 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.14 -2.35 5.02 -26.60 -0.13 -2.48 16 5 C 0.08 1.39 1.79 -67.53 -0.12 1.27 16 6 H 0.08 1.25 3.66 -51.93 -0.19 1.06 16 7 N -0.52 -10.68 4.36 -229.31 -1.00 -11.68 16 8 C 0.19 4.81 3.29 -4.98 -0.02 4.79 16 9 C -0.51 -13.88 8.43 -34.44 -0.29 -14.17 16 10 H 0.06 1.67 7.63 -52.49 -0.40 1.27 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 13 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 C 0.09 1.77 4.88 -4.98 -0.02 1.75 16 18 C -0.06 -0.95 4.93 -104.62 -0.52 -1.47 16 19 C -0.10 -1.52 9.70 -39.58 -0.38 -1.90 16 20 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 21 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 23 C -0.12 -1.70 7.85 -39.58 -0.31 -2.01 16 24 C -0.19 -3.23 4.69 -26.59 -0.12 -3.35 16 25 C 0.07 0.94 6.52 37.21 0.24 1.19 16 26 O -0.38 -6.14 10.60 -35.23 -0.37 -6.51 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.78 4.98 -51.93 -0.26 0.52 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.57 6.42 -51.93 -0.33 1.24 16 32 H 0.03 0.93 6.12 -51.93 -0.32 0.61 16 33 H 0.00 -0.12 7.11 -51.93 -0.37 -0.49 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.03 0.55 6.71 -51.93 -0.35 0.21 16 36 H 0.09 1.88 7.08 -51.93 -0.37 1.52 16 37 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.11 1.51 7.75 -52.49 -0.41 1.10 16 42 H 0.08 1.72 6.43 -51.93 -0.33 1.38 16 43 H 0.06 1.04 6.94 -51.93 -0.36 0.68 16 44 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -29.39 342.78 -10.20 -39.59 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.96 Total: 4.25 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.75 Total: -21.63 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.26 Total: -37.29 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.37 Total: -6.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.39 -10.20 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168103899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.579 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds