Wall clock time and date at job start Fri Apr 10 2020 19:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46833 * 2 1 4 4 C 1.50690 * 109.47358 * 239.99449 * 2 1 3 5 5 C 1.38230 * 120.00361 * 285.51448 * 4 2 1 6 6 C 1.38238 * 120.00458 * 179.78402 * 5 4 2 7 7 C 1.38237 * 119.99659 * 0.44894 * 6 5 4 8 8 C 1.38238 * 119.99908 * 359.80271 * 7 6 5 9 9 C 1.38232 * 120.00150 * 359.97438 * 8 7 6 10 10 N 1.46901 * 109.47191 * 119.99129 * 2 1 3 11 11 C 1.46900 * 111.00012 * 171.84468 * 10 2 1 12 12 C 1.52992 * 109.47076 * 60.95188 * 11 10 2 13 13 O 1.42897 * 109.47363 * 74.40728 * 12 11 10 14 14 C 1.46899 * 111.00348 * 295.80252 * 10 2 1 15 15 C 1.53005 * 109.47075 * 165.82952 * 14 10 2 16 16 C 1.50697 * 115.56263 * 283.78406 * 15 14 10 17 17 H 1.07997 * 119.99741 * 139.38499 * 16 15 14 18 18 C 1.37876 * 119.99835 * 319.38087 * 16 15 14 19 19 N 1.31510 * 120.00084 * 0.62275 * 18 16 15 20 20 Si 1.86805 * 119.99807 * 180.61855 * 18 16 15 21 21 H 1.48499 * 109.47089 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46917 * 119.99905 * 20 18 16 23 23 H 1.48495 * 109.46974 * 240.00017 * 20 18 16 24 24 C 1.53004 * 117.49476 * 69.47646 * 15 14 10 25 25 C 1.53002 * 60.03351 * 107.47524 * 24 15 14 26 26 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47267 * 300.00159 * 1 2 3 28 28 H 1.08998 * 109.47059 * 60.00743 * 1 2 3 29 29 H 1.08007 * 119.99931 * 0.02562 * 5 4 2 30 30 H 1.07999 * 120.00121 * 180.27425 * 6 5 4 31 31 H 1.07995 * 120.00179 * 179.83498 * 7 6 5 32 32 H 1.07999 * 119.99952 * 179.97438 * 8 7 6 33 33 H 1.08001 * 120.00170 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.46903 * 180.95008 * 11 10 2 35 35 H 1.09000 * 109.46918 * 300.95123 * 11 10 2 36 36 H 1.08998 * 109.47691 * 194.41041 * 12 11 10 37 37 H 1.09001 * 109.47228 * 314.40953 * 12 11 10 38 38 H 0.96703 * 114.00540 * 184.98962 * 13 12 11 39 39 H 1.09003 * 109.46996 * 45.83233 * 14 10 2 40 40 H 1.08996 * 109.47211 * 285.83112 * 14 10 2 41 41 H 0.97003 * 119.99515 * 185.01048 * 19 18 16 42 42 H 1.09000 * 117.49498 * 214.97814 * 24 15 14 43 43 H 1.08999 * 117.49788 * 359.97027 * 24 15 14 44 44 H 1.08998 * 117.50415 * 107.49673 * 25 24 15 45 45 H 1.08995 * 117.49627 * 252.52427 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 1.9609 -2.0886 -1.3103 6 6 2.4177 -2.7401 -2.4407 7 6 2.9544 -2.0139 -3.4874 8 6 3.0306 -0.6361 -3.4053 9 6 2.5697 0.0156 -2.2768 10 7 2.0197 -0.6923 1.1995 11 6 3.4751 -0.8827 1.1402 12 6 4.1653 0.4808 1.0685 13 8 4.1153 1.1081 2.3515 14 6 1.6324 0.0294 2.4190 15 6 1.8392 -0.8760 3.6349 16 6 0.7984 -1.9479 3.8320 17 1 1.0957 -2.9385 4.1429 18 6 -0.5333 -1.6638 3.6154 19 7 -0.8940 -0.4609 3.2250 20 14 -1.8251 -2.9877 3.8764 21 1 -1.1650 -4.2442 4.3130 22 1 -2.7841 -2.5445 4.9199 23 1 -2.5531 -3.2265 2.6044 24 6 3.2791 -1.2078 4.0318 25 6 2.4525 -0.2467 4.8884 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.5446 -2.6562 -0.4911 30 1 2.3578 -3.8165 -2.5050 31 1 3.3137 -2.5230 -4.3695 32 1 3.4503 -0.0688 -4.2229 33 1 2.6296 1.0920 -2.2125 34 1 3.8089 -1.4124 2.0325 35 1 3.7294 -1.4657 0.2551 36 1 5.2049 0.3466 0.7700 37 1 3.6554 1.1081 0.3373 38 1 4.4666 2.0090 2.3628 39 1 0.5828 0.3160 2.3537 40 1 2.2473 0.9234 2.5229 41 1 -1.8348 -0.2395 3.1428 42 1 3.4736 -2.2015 4.4355 43 1 4.0790 -0.7815 3.4264 44 1 2.1030 -0.6080 5.8556 45 1 2.7082 0.8120 4.8462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168283310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:35:59 Heat of formation + Delta-G solvation = 29.341374 kcal Electronic energy + Delta-G solvation = -24808.282162 eV Core-core repulsion = 21599.543112 eV Total energy + Delta-G solvation = -3208.739050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.63843 -37.99964 -35.81930 -35.10649 -32.04889 -31.40365 -30.60848 -29.48096 -27.42438 -25.40867 -24.57782 -23.10727 -22.11684 -21.68361 -20.73241 -19.23434 -18.57905 -17.07653 -16.49410 -15.94423 -15.66182 -14.94776 -14.84353 -14.48975 -14.03952 -13.58181 -13.46089 -13.16490 -13.05100 -12.73827 -12.61641 -12.25001 -11.73827 -11.63110 -11.34577 -11.08985 -11.06263 -11.00770 -10.90127 -10.68221 -10.62273 -10.37284 -10.31473 -9.95206 -9.72153 -9.25899 -9.00942 -8.66390 -8.65282 -8.42723 -8.30984 -7.85867 -7.01099 -5.77242 -3.88676 1.61948 1.68024 3.35548 3.44061 3.48365 4.06012 4.50545 4.63585 4.84183 5.10787 5.14910 5.21720 5.27758 5.43230 5.51161 5.66317 5.69904 5.77322 5.83119 5.89615 5.99466 6.08480 6.19693 6.26348 6.34430 6.43592 6.48436 6.65215 6.70817 6.75804 6.78624 6.81176 6.98138 7.00929 7.02617 7.17974 7.20060 7.24763 7.30147 7.48345 7.60439 7.83109 8.00531 8.16492 8.41077 8.48381 8.78003 9.08758 9.72827 11.15638 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.006811 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.240045 B = 4110.005147 C = 5193.570640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.120 3.880 3 H 0.032 0.968 4 C -0.062 4.062 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.125 4.125 10 N -0.497 5.497 11 C 0.033 3.967 12 C 0.040 3.960 13 O -0.545 6.545 14 C 0.055 3.945 15 C 0.072 3.928 16 C -0.459 4.459 17 H 0.052 0.948 18 C 0.073 3.927 19 N -0.885 5.885 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.285 1.285 24 C -0.219 4.219 25 C -0.200 4.200 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.357 0.643 39 H 0.145 0.855 40 H 0.030 0.970 41 H 0.256 0.744 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.282 2.602 -10.954 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.050 0.950 4 C -0.063 4.063 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.145 4.145 9 C -0.144 4.144 10 N -0.219 5.219 11 C -0.096 4.096 12 C -0.040 4.040 13 O -0.349 6.349 14 C -0.070 4.070 15 C 0.071 3.929 16 C -0.497 4.497 17 H 0.070 0.930 18 C -0.127 4.127 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.211 1.211 24 C -0.256 4.256 25 C -0.239 4.239 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.153 0.847 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.203 0.797 39 H 0.162 0.838 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.589 1.619 -10.871 12.815 hybrid contribution 0.170 0.633 -0.103 0.663 sum 6.759 2.251 -10.974 13.084 Atomic orbital electron populations 1.21832 0.93021 1.03002 1.01435 1.20526 0.96262 0.93872 0.88214 0.95016 1.20059 0.96682 0.94200 0.95327 1.21231 0.97760 0.94294 0.97515 1.21186 0.99523 0.99687 0.94040 1.21036 1.01063 0.94219 0.98763 1.20982 1.01078 0.94610 0.97867 1.21010 0.99947 0.99368 0.94037 1.62128 1.08713 1.49664 1.01441 1.22812 0.89369 0.93780 1.03593 1.23027 0.98430 0.97223 0.85290 1.86873 1.85495 1.31657 1.30902 1.22750 1.05585 0.92783 0.85877 1.18824 0.88460 0.95494 0.90129 1.20601 0.90506 0.95759 1.42800 0.92964 1.24789 0.98152 0.95247 0.94467 1.69437 1.15546 1.19416 1.48162 0.86595 0.81793 0.82318 0.77551 1.20104 1.21391 1.21123 1.23133 0.97999 0.98202 1.06224 1.22868 1.07965 0.95745 0.97287 0.92043 0.89601 0.94455 0.84653 0.86510 0.86878 0.86838 0.86897 0.87798 0.91133 0.95080 0.94274 0.79684 0.83794 0.95204 0.93315 0.92090 0.89216 0.91501 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.04 37.16 0.34 -2.23 16 2 C 0.12 2.14 1.70 -68.87 -0.12 2.02 16 3 H 0.03 0.57 6.27 -51.93 -0.33 0.24 16 4 C -0.06 -0.99 3.58 -104.63 -0.37 -1.36 16 5 C -0.09 -1.44 8.01 -39.58 -0.32 -1.75 16 6 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 7 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 8 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 9 C -0.13 -1.74 9.67 -39.58 -0.38 -2.12 16 10 N -0.50 -9.98 4.08 -228.05 -0.93 -10.91 16 11 C 0.03 0.60 5.01 -3.83 -0.02 0.58 16 12 C 0.04 0.62 6.80 37.15 0.25 0.88 16 13 O -0.55 -8.94 8.66 -35.23 -0.31 -9.24 16 14 C 0.06 1.27 4.25 -3.82 -0.02 1.25 16 15 C 0.07 1.77 1.89 -155.62 -0.29 1.48 16 16 C -0.46 -12.48 9.02 -34.44 -0.31 -12.79 16 17 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 18 C 0.07 1.95 5.37 -17.82 -0.10 1.85 16 19 N -0.89 -23.44 9.93 55.43 0.55 -22.89 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.22 -4.95 7.91 -26.73 -0.21 -5.16 16 25 C -0.20 -4.74 9.89 -26.69 -0.26 -5.01 16 26 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 27 H 0.09 1.81 5.79 -51.93 -0.30 1.51 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.14 2.41 7.89 -52.48 -0.41 1.99 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.11 1.41 8.00 -52.49 -0.42 0.99 16 34 H 0.10 2.09 4.21 -51.93 -0.22 1.87 16 35 H 0.07 1.22 5.99 -51.93 -0.31 0.91 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.60 5.96 -51.93 -0.31 0.29 16 38 H 0.36 4.25 9.12 45.56 0.42 4.67 16 39 H 0.15 3.62 2.76 -51.93 -0.14 3.47 16 40 H 0.03 0.68 4.75 -51.93 -0.25 0.43 16 41 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 1.91 4.14 -51.93 -0.21 1.70 16 44 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.06 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -28.01 339.76 -9.43 -37.43 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.84 Total: 12.88 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -3.01 Total: -28.51 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: -0.38 Total: -33.80 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.31 Total: -9.24 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.01 -9.43 -37.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168283310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.775 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds