Wall clock time and date at job start Fri Apr 10 2020 19:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21250 * 119.99862 * 2 1 4 4 C 1.47170 * 120.00132 * 179.97438 * 2 1 3 5 5 C 1.39844 * 120.17161 * 179.97438 * 4 2 1 6 6 C 1.37885 * 119.82365 * 179.97438 * 5 4 2 7 7 C 1.38405 * 120.17518 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.82700 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47168 * 20.00356 * 8 7 6 10 10 C 1.52993 * 109.47135 * 259.99875 * 8 7 6 11 11 N 1.46900 * 109.46675 * 139.99910 * 8 7 6 12 12 C 1.46903 * 111.00088 * 205.00004 * 11 8 7 13 13 H 1.09003 * 109.47150 * 325.00277 * 12 11 8 14 14 C 1.52997 * 109.46942 * 85.00261 * 12 11 8 15 15 C 1.52996 * 109.47316 * 205.00607 * 12 11 8 16 16 C 1.53001 * 109.47536 * 64.99960 * 15 12 11 17 17 C 1.50700 * 109.47308 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99947 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99738 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00212 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47322 * 89.99575 * 21 19 17 23 23 H 1.48494 * 109.47065 * 210.00153 * 21 19 17 24 24 H 1.48505 * 109.46668 * 329.99907 * 21 19 17 25 25 C 1.38401 * 120.34587 * 359.97438 * 7 6 5 26 26 C 1.37888 * 120.17305 * 0.02562 * 25 7 6 27 27 H 1.09008 * 109.46640 * 240.00357 * 1 2 3 28 28 H 1.08996 * 109.47121 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47117 * 120.00491 * 1 2 3 30 30 H 1.07999 * 120.08800 * 359.95635 * 5 4 2 31 31 H 1.08011 * 119.91585 * 179.72353 * 6 5 4 32 32 H 1.09003 * 109.46841 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47486 * 300.00286 * 10 8 7 34 34 H 1.09003 * 109.47256 * 60.00387 * 10 8 7 35 35 H 1.00900 * 111.00678 * 328.95776 * 11 8 7 36 36 H 1.08998 * 109.47233 * 60.00513 * 14 12 11 37 37 H 1.09004 * 109.46776 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47231 * 299.99720 * 14 12 11 39 39 H 1.09004 * 109.47150 * 184.99678 * 15 12 11 40 40 H 1.09006 * 109.47062 * 304.99613 * 15 12 11 41 41 H 1.09004 * 109.46670 * 300.00011 * 16 15 12 42 42 H 1.09000 * 109.46887 * 59.99979 * 16 15 12 43 43 H 0.97007 * 120.00185 * 180.02562 * 20 19 17 44 44 H 1.08005 * 119.91408 * 180.02562 * 25 7 6 45 45 H 1.08005 * 120.08572 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 3.6414 -1.2787 0.0000 6 6 4.3235 -2.4769 0.0011 7 6 3.6279 -3.6735 0.0022 8 6 4.3815 -4.9786 0.0028 9 1 5.3996 -4.8101 0.3538 10 6 4.4190 -5.5464 -1.4174 11 7 3.7078 -5.9324 0.8940 12 6 4.6498 -6.9441 1.3911 13 1 5.3786 -7.1750 0.6140 14 6 5.3744 -6.4034 2.6254 15 6 3.8836 -8.2145 1.7651 16 6 3.2617 -8.8241 0.5071 17 6 2.5064 -10.0750 0.8757 18 1 2.4737 -10.4027 1.9043 19 6 1.8573 -10.8011 -0.1002 20 7 1.1986 -11.8930 0.2214 21 14 1.9133 -10.2339 -1.8792 22 1 3.0865 -10.8427 -2.5561 23 1 0.6689 -10.6539 -2.5720 24 1 2.0293 -8.7540 -1.9234 25 6 2.2439 -3.6777 0.0027 26 6 1.5473 -2.4878 0.0017 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 4.1856 -0.3458 -0.0015 31 1 5.4036 -2.4819 -0.0038 32 1 4.9636 -6.4906 -1.4168 33 1 3.4009 -5.7149 -1.7684 34 1 4.9189 -4.8386 -2.0787 35 1 3.2536 -5.4549 1.6580 36 1 4.6457 -6.1727 3.4024 37 1 6.0737 -7.1539 2.9940 38 1 5.9203 -5.4985 2.3589 39 1 4.5686 -8.9324 2.2162 40 1 3.0958 -7.9673 2.4768 41 1 2.5767 -8.1061 0.0560 42 1 4.0495 -9.0712 -0.2045 43 1 0.7422 -12.4041 -0.4652 44 1 1.7082 -4.6155 0.0040 45 1 0.4672 -2.4927 0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:36:12 Heat of formation + Delta-G solvation = -32.610365 kcal Electronic energy + Delta-G solvation = -22606.487821 eV Core-core repulsion = 19395.062342 eV Total energy + Delta-G solvation = -3211.425479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33481 -38.97076 -37.28973 -34.21244 -32.68585 -31.77940 -30.76845 -30.09934 -29.08069 -28.00616 -25.35128 -24.34170 -22.83882 -21.48836 -20.68505 -19.88578 -19.83268 -17.31395 -16.60264 -16.23819 -15.88454 -15.27047 -15.17318 -14.77060 -14.38568 -14.21156 -13.99969 -13.73296 -13.49124 -13.21955 -12.85732 -12.70931 -12.58608 -12.52454 -12.45832 -12.29790 -11.99424 -11.80790 -11.50184 -11.39346 -11.18689 -10.99034 -10.76950 -10.49311 -10.02958 -9.82891 -9.65387 -9.49877 -9.19026 -9.04316 -8.95349 -8.44743 -8.11845 -5.95718 -3.91809 0.40957 1.19280 2.15038 3.36674 3.43953 3.50632 3.57053 3.77954 4.22287 4.52785 4.53928 4.59951 4.77879 4.78753 5.01792 5.06894 5.15364 5.19582 5.24573 5.35044 5.39447 5.40125 5.45308 5.55881 5.56343 5.66713 5.78325 5.84629 5.93891 6.03301 6.11257 6.16074 6.17797 6.23974 6.33341 6.43292 6.54143 6.69216 6.69871 7.08549 7.23343 7.29083 7.49943 7.61723 7.72696 7.93058 8.64665 9.10692 9.68410 11.18215 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.003539 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.233943 B = 7910.215899 C = 8636.932883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.397 3.603 3 O -0.465 6.465 4 C -0.182 4.182 5 C -0.063 4.063 6 C -0.130 4.130 7 C -0.049 4.049 8 C 0.119 3.881 9 H 0.051 0.949 10 C -0.137 4.137 11 N -0.668 5.668 12 C 0.081 3.919 13 H 0.073 0.927 14 C -0.180 4.180 15 C -0.089 4.089 16 C -0.005 4.005 17 C -0.517 4.517 18 H 0.067 0.933 19 C 0.063 3.937 20 N -0.910 5.910 21 Si 0.879 3.121 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.261 1.261 25 C -0.113 4.113 26 C -0.072 4.072 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.339 0.661 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.032 0.968 42 H 0.001 0.999 43 H 0.261 0.739 44 H 0.144 0.856 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 21.940 -0.507 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.276 3.724 3 O -0.341 6.341 4 C -0.183 4.183 5 C -0.081 4.081 6 C -0.148 4.148 7 C -0.049 4.049 8 C 0.009 3.991 9 H 0.069 0.931 10 C -0.195 4.195 11 N -0.299 5.299 12 C -0.029 4.029 13 H 0.092 0.908 14 C -0.239 4.239 15 C -0.127 4.127 16 C -0.042 4.042 17 C -0.555 4.555 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.550 5.550 21 Si 0.707 3.293 22 H -0.207 1.207 23 H -0.218 1.218 24 H -0.185 1.185 25 C -0.131 4.131 26 C -0.090 4.090 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.020 0.980 43 H 0.070 0.930 44 H 0.162 0.838 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.694 21.950 -1.100 22.286 hybrid contribution 0.467 0.488 -0.293 0.736 sum 4.161 22.438 -1.392 22.863 Atomic orbital electron populations 1.22258 0.93731 1.05064 1.04753 1.22553 0.91723 0.87618 0.70552 1.90523 1.72283 1.34437 1.36883 1.20488 0.94613 0.94708 1.08458 1.21327 0.93182 0.98409 0.95196 1.21035 1.00121 0.91637 1.02048 1.20371 0.94332 0.94719 0.95491 1.20531 0.95051 0.87909 0.95572 0.93106 1.21811 1.03128 1.00585 0.93952 1.60714 1.31088 1.15346 1.22756 1.21819 0.93272 0.93124 0.94651 0.90842 1.22520 1.01041 1.00740 0.99630 1.21444 0.98262 0.92969 1.00054 1.19462 0.95617 0.95915 0.93220 1.21269 1.30812 1.07303 0.96090 0.91460 1.25031 0.94999 0.94719 0.98928 1.69933 1.34826 1.16602 1.33593 0.86778 0.77136 0.80052 0.85365 1.20669 1.21755 1.18486 1.21218 0.93747 0.98846 0.99273 1.21496 1.00162 0.91350 0.95966 0.88679 0.89812 0.88703 0.85217 0.85630 0.91803 0.91515 0.92961 0.84169 0.92619 0.92059 0.93723 0.92908 0.92848 0.95013 0.98024 0.92980 0.83843 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 8.93 36.01 0.32 -0.95 16 2 C 0.40 3.96 7.23 -30.68 -0.22 3.74 16 3 O -0.46 -6.14 17.08 5.58 0.10 -6.05 16 4 C -0.18 -1.85 5.87 -105.07 -0.62 -2.46 16 5 C -0.06 -0.66 9.60 -39.11 -0.38 -1.03 16 6 C -0.13 -1.31 9.64 -39.65 -0.38 -1.69 16 7 C -0.05 -0.53 4.72 -104.50 -0.49 -1.02 16 8 C 0.12 1.41 2.62 -68.87 -0.18 1.23 16 9 H 0.05 0.57 6.97 -51.93 -0.36 0.21 16 10 C -0.14 -1.74 9.37 37.15 0.35 -1.39 16 11 N -0.67 -9.14 4.88 -100.96 -0.49 -9.63 16 12 C 0.08 1.19 2.40 -67.71 -0.16 1.03 16 13 H 0.07 1.11 7.11 -51.93 -0.37 0.74 16 14 C -0.18 -2.20 9.15 37.16 0.34 -1.86 16 15 C -0.09 -1.69 4.83 -26.73 -0.13 -1.82 16 16 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 17 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 20 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 21 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 C -0.11 -1.21 8.98 -39.65 -0.36 -1.57 16 26 C -0.07 -0.67 9.47 -39.11 -0.37 -1.04 16 27 H 0.09 0.46 8.09 -51.92 -0.42 0.04 16 28 H 0.08 0.52 8.12 -51.93 -0.42 0.09 16 29 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.13 1.30 7.65 -52.49 -0.40 0.90 16 31 H 0.13 1.06 8.03 -52.48 -0.42 0.64 16 32 H 0.06 0.88 7.43 -51.93 -0.39 0.49 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.34 4.33 7.73 -39.29 -0.30 4.02 16 36 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.49 7.43 -51.93 -0.39 0.10 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.76 6.81 -51.93 -0.35 0.40 16 42 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.14 1.65 7.70 -52.48 -0.40 1.24 16 45 H 0.13 0.89 7.05 -52.48 -0.37 0.52 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -32.57 366.93 -9.12 -41.69 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.53 Total: 1.25 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.82 Total: -22.42 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.28 Total: -37.28 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: 0.10 Total: -6.05 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.57 -9.12 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.077 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds