Wall clock time and date at job start Fri Apr 10 2020 19:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.53007 * 109.47039 * 240.00449 * 2 1 3 5 5 C 1.52998 * 109.46873 * 174.99743 * 4 2 1 6 6 C 1.50699 * 109.46700 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00803 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99889 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00186 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00030 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 89.99863 * 10 8 6 12 12 H 1.48503 * 109.47261 * 330.00044 * 10 8 6 13 13 H 1.48500 * 109.47454 * 210.00037 * 10 8 6 14 14 N 1.46897 * 109.47367 * 120.00151 * 2 1 3 15 15 C 1.46895 * 111.00154 * 275.00225 * 14 2 1 16 16 C 1.52998 * 109.47431 * 179.97438 * 15 14 2 17 17 H 1.09001 * 109.69430 * 305.00196 * 16 15 14 18 18 C 1.53414 * 109.69745 * 65.56095 * 16 15 14 19 19 O 1.42823 * 108.38992 * 184.40209 * 18 16 15 20 20 C 1.35839 * 117.87741 * 310.88093 * 19 18 16 21 21 C 1.39152 * 118.50701 * 197.12322 * 20 19 18 22 22 C 1.37972 * 120.21376 * 180.22604 * 21 20 19 23 23 C 1.38285 * 119.96097 * 0.02562 * 22 21 20 24 24 C 1.38106 * 119.98508 * 359.89852 * 23 22 21 25 25 C 1.38371 * 121.80340 * 17.18829 * 20 19 18 26 26 C 1.50788 * 121.41933 * 359.49703 * 25 20 19 27 27 H 1.08992 * 109.46941 * 299.99496 * 1 2 3 28 28 H 1.09004 * 109.47176 * 60.00062 * 1 2 3 29 29 H 1.09004 * 109.46690 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47180 * 54.99840 * 4 2 1 31 31 H 1.08997 * 109.46702 * 295.00010 * 4 2 1 32 32 H 1.09004 * 109.47139 * 60.00071 * 5 4 2 33 33 H 1.08997 * 109.47675 * 299.99671 * 5 4 2 34 34 H 0.96998 * 120.00124 * 180.02562 * 9 8 6 35 35 H 1.00902 * 110.99921 * 38.95857 * 14 2 1 36 36 H 1.09004 * 109.47232 * 299.99764 * 15 14 2 37 37 H 1.09004 * 109.47314 * 59.99782 * 15 14 2 38 38 H 1.08998 * 109.67785 * 304.12701 * 18 16 15 39 39 H 1.08998 * 109.68162 * 64.68131 * 18 16 15 40 40 H 1.08002 * 119.88938 * 0.23026 * 21 20 19 41 41 H 1.07997 * 120.01522 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.00689 * 179.88254 * 23 22 21 43 43 H 1.07996 * 119.84404 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.41218 * 257.81456 * 26 25 20 45 45 H 1.09004 * 109.47855 * 137.92879 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 6 4.0671 -1.3240 -2.5440 7 1 3.3688 -1.8044 -3.2132 8 6 5.4185 -1.3611 -2.8152 9 7 5.8569 -1.9810 -3.8891 10 14 6.6267 -0.5309 -1.6575 11 1 7.0612 -1.4986 -0.6183 12 1 5.9702 0.6319 -1.0075 13 1 7.8091 -0.0658 -2.4262 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3468 16 6 2.5951 -0.5333 3.5744 17 1 1.9716 -1.4092 3.7533 18 6 4.0473 -0.9706 3.3432 19 8 4.4633 -1.7597 4.4586 20 6 4.2331 -1.2695 5.7044 21 6 4.9315 -1.8205 6.7744 22 6 4.7217 -1.3526 8.0553 23 6 3.8143 -0.3331 8.2782 24 6 3.1205 0.2172 7.2184 25 6 3.3287 -0.2468 5.9301 26 6 2.5582 0.3851 4.7984 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -0.2616 -2.1371 31 1 1.7516 -1.7714 -1.2057 32 1 3.9995 -1.0727 -0.4261 33 1 3.8532 0.4371 -1.3574 34 1 6.8076 -2.0075 -4.0797 35 1 1.4497 -1.4980 1.4099 36 1 2.7589 1.0461 2.1182 37 1 1.0871 0.6162 2.5525 38 1 4.1113 -1.5629 2.4304 39 1 4.6861 -0.0917 3.2567 40 1 5.6402 -2.6170 6.6016 41 1 5.2658 -1.7824 8.8833 42 1 3.6481 0.0324 9.2808 43 1 2.4122 1.0130 7.3951 44 1 3.0083 1.3451 4.5453 45 1 1.5237 0.5397 5.1049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:36:33 Heat of formation + Delta-G solvation = -55.440618 kcal Electronic energy + Delta-G solvation = -22847.404781 eV Core-core repulsion = 19634.989308 eV Total energy + Delta-G solvation = -3212.415473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66584 -38.95485 -38.24421 -36.18295 -34.97638 -33.19311 -31.79741 -31.17065 -30.03107 -27.14885 -26.70581 -25.96340 -23.65047 -22.94402 -22.56600 -21.55365 -20.54624 -18.81752 -18.77846 -17.37237 -17.16582 -16.41651 -16.25161 -16.21990 -15.66981 -15.54993 -15.04528 -14.83682 -14.64684 -14.46363 -14.39501 -14.09506 -13.98881 -13.69371 -13.35205 -13.16077 -13.04864 -12.87440 -12.66630 -12.41823 -12.28064 -11.96519 -11.84948 -11.68572 -11.54322 -11.46683 -11.37334 -11.26440 -11.06400 -10.71346 -9.72187 -9.15904 -9.08397 -8.26322 -6.27873 0.38152 0.48995 1.36390 1.37599 1.49841 2.38498 2.39896 2.82794 3.10337 3.17210 3.65510 3.71215 3.83666 3.94215 4.05740 4.16050 4.24367 4.30515 4.37304 4.45581 4.51790 4.56819 4.60138 4.63477 4.72299 4.75933 4.82818 4.83881 4.94080 5.01172 5.04451 5.07793 5.13016 5.22054 5.27439 5.38970 5.40412 5.54543 5.60636 5.62637 5.71884 5.78561 5.91327 6.25048 6.35581 6.53177 6.60986 6.81442 7.36374 8.91041 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003895 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.208066 B = 7187.351425 C = 8511.273230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.072 0.928 4 C -0.086 4.086 5 C 0.002 3.998 6 C -0.528 4.528 7 H 0.027 0.973 8 C 0.001 3.999 9 N -0.957 5.957 10 Si 0.951 3.049 11 H -0.270 1.270 12 H -0.246 1.246 13 H -0.287 1.287 14 N -0.695 5.695 15 C 0.075 3.925 16 C -0.110 4.110 17 H 0.080 0.920 18 C 0.068 3.932 19 O -0.339 6.339 20 C 0.102 3.898 21 C -0.172 4.172 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.089 4.089 25 C -0.171 4.171 26 C -0.068 4.068 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.007 0.993 34 H 0.264 0.736 35 H 0.344 0.656 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.086 0.914 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 7.503 26.948 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 H 0.090 0.910 4 C -0.124 4.124 5 C -0.035 4.035 6 C -0.566 4.566 7 H 0.046 0.954 8 C -0.195 4.195 9 N -0.598 5.598 10 Si 0.775 3.225 11 H -0.196 1.196 12 H -0.170 1.170 13 H -0.213 1.213 14 N -0.326 5.326 15 C -0.054 4.054 16 C -0.129 4.129 17 H 0.098 0.902 18 C -0.007 4.007 19 O -0.254 6.254 20 C 0.057 3.943 21 C -0.191 4.191 22 C -0.109 4.109 23 C -0.174 4.174 24 C -0.107 4.107 25 C -0.172 4.172 26 C -0.105 4.105 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.166 0.834 44 H 0.104 0.896 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.420 7.378 26.622 28.880 hybrid contribution -0.035 -0.036 -0.374 0.378 sum -8.456 7.342 26.248 28.537 Atomic orbital electron populations 1.22389 0.95694 1.02309 1.02536 1.21499 0.93241 0.97294 0.89686 0.90951 1.21350 0.95843 0.99249 0.95942 1.19360 0.94634 0.95017 0.94497 1.21681 0.92470 1.33697 1.08753 0.95433 1.26011 1.00729 0.95877 0.96872 1.70085 1.15077 1.45897 1.28782 0.85642 0.77891 0.80098 0.78866 1.19554 1.16980 1.21271 1.60421 1.58505 1.10058 1.03660 1.21864 1.00270 0.94823 0.88469 1.21699 0.96057 0.99659 0.95448 0.90194 1.23068 0.95131 0.95734 0.86764 1.86000 1.78970 1.47461 1.12951 1.19178 0.95214 0.94944 0.84969 1.20875 1.02308 1.03817 0.92077 1.21252 0.97687 0.96320 0.95683 1.21398 0.97942 0.97918 1.00175 1.21241 0.99282 0.99412 0.90788 1.20093 1.00123 0.99658 0.97278 1.20527 1.01059 0.98041 0.90876 0.91434 0.92008 0.92403 0.93501 0.93817 0.95508 0.97498 0.92737 0.83669 0.91212 0.92691 0.87550 0.92440 0.85557 0.83166 0.83223 0.83445 0.89609 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.16 71.98 0.66 -3.01 16 2 C 0.09 2.58 2.59 44.92 0.12 2.69 16 3 H 0.07 2.03 7.80 -2.39 -0.02 2.02 16 4 C -0.09 -3.29 4.83 30.60 0.15 -3.14 16 5 C 0.00 0.11 3.93 29.85 0.12 0.23 16 6 C -0.53 -31.55 9.66 25.60 0.25 -31.30 16 7 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 8 C 0.00 0.05 5.47 84.65 0.46 0.51 16 9 N -0.96 -62.25 13.96 21.45 0.30 -61.95 16 10 Si 0.95 46.58 27.47 68.60 1.88 48.47 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 N -0.69 -17.94 5.14 -491.57 -2.53 -20.47 16 15 C 0.07 1.51 4.86 86.30 0.42 1.93 16 16 C -0.11 -2.26 2.56 -10.63 -0.03 -2.29 16 17 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 18 C 0.07 1.82 6.26 72.12 0.45 2.27 16 19 O -0.34 -10.11 10.27 -91.74 -0.94 -11.05 16 20 C 0.10 2.62 6.47 22.52 0.15 2.77 16 21 C -0.17 -3.91 9.94 22.43 0.22 -3.69 16 22 C -0.09 -1.55 10.04 22.22 0.22 -1.33 16 23 C -0.16 -2.34 10.04 22.25 0.22 -2.11 16 24 C -0.09 -1.45 9.67 22.30 0.22 -1.24 16 25 C -0.17 -3.55 5.75 -19.74 -0.11 -3.67 16 26 C -0.07 -1.16 5.19 29.90 0.16 -1.00 16 27 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 1.23 8.13 -2.38 -0.02 1.21 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.27 7.18 -2.39 -0.02 1.26 16 33 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 34 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.34 8.16 8.47 -89.69 -0.76 7.40 16 36 H 0.07 1.51 8.06 -2.38 -0.02 1.49 16 37 H 0.06 0.89 7.44 -2.38 -0.02 0.87 16 38 H 0.11 3.25 7.70 -2.39 -0.02 3.23 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 41 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -71.75 358.91 2.52 -69.23 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.14 Total: 18.14 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.67 Total: -42.36 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.23 Total: -82.42 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.94 Total: -11.05 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Total: -71.75 2.52 -69.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.791 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds