Wall clock time and date at job start Fri Apr 10 2020 19:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35906 * 117.00223 * 2 1 4 4 C 1.38649 * 119.94725 * 359.93977 * 3 2 1 5 5 C 1.38119 * 119.87210 * 180.02562 * 4 3 2 6 6 C 1.38173 * 119.99579 * 0.03275 * 5 4 3 7 7 C 1.38498 * 120.33193 * 359.97111 * 6 5 4 8 8 C 1.38172 * 119.88670 * 0.03928 * 7 6 5 9 9 C 1.51364 * 109.77829 * 179.97438 * 8 7 6 10 10 C 1.54343 * 105.16401 * 342.81701 * 9 8 7 11 11 C 1.51378 * 130.36267 * 179.97438 * 7 6 5 12 12 H 1.09005 * 110.38601 * 316.20563 * 11 7 6 13 13 N 1.46902 * 110.30465 * 78.31271 * 11 7 6 14 14 C 1.46906 * 110.99927 * 270.75009 * 13 11 7 15 15 H 1.09000 * 109.47033 * 34.99658 * 14 13 11 16 16 C 1.52997 * 109.46907 * 274.99822 * 14 13 11 17 17 C 1.52993 * 109.47378 * 154.99917 * 14 13 11 18 18 C 1.53009 * 109.47000 * 295.00175 * 17 14 13 19 19 C 1.50702 * 109.47075 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99647 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99647 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47051 * 89.99981 * 23 21 19 25 25 H 1.48499 * 109.46860 * 209.99264 * 23 21 19 26 26 H 1.48491 * 109.47286 * 329.99468 * 23 21 19 27 27 H 1.09004 * 109.46286 * 299.99427 * 1 2 3 28 28 H 1.09001 * 109.47234 * 59.99306 * 1 2 3 29 29 H 1.09000 * 109.46772 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.06127 * 0.09559 * 4 3 2 31 31 H 1.07998 * 119.99964 * 180.02562 * 5 4 3 32 32 H 1.07995 * 119.83787 * 179.97438 * 6 5 4 33 33 H 1.09003 * 110.29748 * 223.89294 * 9 8 7 34 34 H 1.08998 * 110.38538 * 101.78206 * 9 8 7 35 35 H 1.09003 * 110.82377 * 268.11138 * 10 9 8 36 36 H 1.09004 * 110.82122 * 144.56412 * 10 9 8 37 37 H 1.00902 * 111.00001 * 34.69539 * 13 11 7 38 38 H 1.09000 * 109.47140 * 299.99770 * 16 14 13 39 39 H 1.09001 * 109.47375 * 59.99788 * 16 14 13 40 40 H 1.09002 * 109.47045 * 179.97438 * 16 14 13 41 41 H 1.09003 * 109.47360 * 54.99102 * 17 14 13 42 42 H 1.09000 * 109.47744 * 174.99896 * 17 14 13 43 43 H 1.09007 * 109.46734 * 300.00132 * 18 17 14 44 44 H 1.09000 * 109.47100 * 59.99327 * 18 17 14 45 45 H 0.97005 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2899 2.3731 -0.0013 5 6 1.9186 3.6029 -0.0018 6 6 3.2986 3.6732 -0.0018 7 6 4.0579 2.5150 -0.0006 8 6 3.4336 1.2824 -0.0003 9 6 4.4728 0.1818 0.0004 10 6 5.7849 0.8652 -0.4396 11 6 5.5601 2.3275 -0.0008 12 1 6.0280 3.0115 -0.7089 13 7 6.1009 2.5430 1.3480 14 6 6.4443 3.9558 1.5579 15 1 5.7286 4.5860 1.0300 16 6 7.8521 4.2235 1.0220 17 6 6.3988 4.2749 3.0535 18 6 4.9637 4.1271 3.5632 19 6 4.9188 4.4421 5.0362 20 1 5.8234 4.7194 5.5569 21 6 3.7230 4.3751 5.7193 22 7 2.6216 4.0368 5.0852 23 14 3.6675 4.7647 7.5454 24 1 3.4088 6.2148 7.7344 25 1 2.5811 3.9807 8.1859 26 1 4.9680 4.4086 8.1673 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2114 2.3167 -0.0007 31 1 1.3316 4.5094 -0.0024 32 1 3.7875 4.6361 -0.0026 33 1 4.1969 -0.5992 -0.7081 34 1 4.5815 -0.2371 1.0008 35 1 5.9120 0.8006 -1.5203 36 1 6.6402 0.4319 0.0788 37 1 5.4550 2.2194 2.0524 38 1 8.5678 3.5933 1.5499 39 1 7.8846 3.9961 -0.0436 40 1 8.1068 5.2719 1.1773 41 1 7.0484 3.5850 3.5922 42 1 6.7392 5.2974 3.2175 43 1 4.3140 4.8170 3.0244 44 1 4.6234 3.1047 3.3992 45 1 1.7802 3.9900 5.5658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:36:40 Heat of formation + Delta-G solvation = -29.271777 kcal Electronic energy + Delta-G solvation = -23700.325260 eV Core-core repulsion = 20489.044553 eV Total energy + Delta-G solvation = -3211.280707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44203 -38.51414 -36.49069 -34.94366 -32.95079 -31.02592 -29.61033 -29.01748 -28.68921 -26.98050 -25.80046 -24.77253 -22.13297 -21.42835 -20.82662 -20.14436 -19.45908 -17.49941 -16.34431 -16.14822 -15.78977 -15.43090 -15.23674 -14.79816 -14.50578 -14.16668 -13.92147 -13.51857 -13.04849 -12.60845 -12.47872 -12.43662 -12.33560 -12.03648 -11.83651 -11.53062 -11.44629 -11.21955 -11.11247 -11.01243 -10.93485 -10.74827 -10.70677 -10.57491 -10.43733 -10.14035 -9.72290 -9.23524 -8.98600 -8.51364 -8.31254 -7.89818 -7.82943 -5.96196 -3.98458 1.56870 1.74328 3.33014 3.39326 3.43086 3.43866 3.99255 4.48353 4.57807 4.65609 4.89783 5.05548 5.17087 5.20998 5.29038 5.34426 5.39098 5.45846 5.49182 5.54131 5.63026 5.75321 5.79904 5.85774 5.98244 6.01705 6.10842 6.17914 6.22263 6.32510 6.38080 6.41048 6.54608 6.56283 6.62317 6.72963 6.85858 6.95830 7.02718 7.13605 7.55561 7.58868 7.67787 7.85234 7.94466 8.04025 8.46591 9.08209 9.65227 11.14236 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.005799 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.448067 B = 4827.086039 C = 6403.318482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.133 3.867 4 C -0.203 4.203 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.088 4.088 8 C -0.120 4.120 9 C -0.070 4.070 10 C -0.110 4.110 11 C 0.126 3.874 12 H 0.082 0.918 13 N -0.669 5.669 14 C 0.080 3.920 15 H 0.039 0.961 16 C -0.136 4.136 17 C -0.115 4.115 18 C 0.025 3.975 19 C -0.519 4.519 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.355 0.645 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.014 0.986 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -5.591 -14.369 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.088 3.912 4 C -0.221 4.221 5 C -0.095 4.095 6 C -0.143 4.143 7 C -0.090 4.090 8 C -0.122 4.122 9 C -0.107 4.107 10 C -0.148 4.148 11 C 0.016 3.984 12 H 0.100 0.900 13 N -0.302 5.302 14 C -0.030 4.030 15 H 0.057 0.943 16 C -0.194 4.194 17 C -0.153 4.153 18 C -0.012 4.012 19 C -0.557 4.557 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.178 0.822 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.399 -6.000 -14.486 15.685 hybrid contribution -1.625 0.912 1.294 2.269 sum -1.226 -5.088 -13.192 14.193 Atomic orbital electron populations 1.23003 0.78984 1.03468 1.01268 1.86049 1.20895 1.27280 1.89010 1.18555 0.90785 0.84071 0.97787 1.21047 0.99569 0.92310 1.09219 1.20766 0.94340 0.96914 0.97453 1.20533 0.93438 0.97513 1.02782 1.21182 0.97265 0.92457 0.98115 1.19785 0.90359 0.96525 1.05489 1.20894 0.92030 0.95769 1.02053 1.22326 0.97682 0.94408 1.00352 1.21078 0.87347 0.97223 0.92754 0.90008 1.60915 1.47396 1.19194 1.02701 1.21644 0.95409 0.87984 0.97937 0.94259 1.21802 0.97260 1.00413 0.99919 1.21834 1.01234 1.00298 0.91925 1.19081 0.89829 0.96677 0.95660 1.21235 0.93873 1.46153 0.94481 0.92787 1.25010 0.95845 0.95399 0.98078 1.69982 0.98829 1.48363 1.35893 0.86650 0.77680 0.78229 0.85780 1.20769 1.21313 1.19876 0.92582 0.93024 0.88624 0.85700 0.85863 0.86473 0.91216 0.90310 0.91225 0.89431 0.82231 0.92363 0.93766 0.93098 0.92557 0.92836 0.97006 0.96755 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.80 10.44 -19.45 -0.20 -5.01 16 3 C 0.13 2.19 6.69 -39.17 -0.26 1.93 16 4 C -0.20 -3.17 9.03 -39.47 -0.36 -3.53 16 5 C -0.08 -1.24 10.04 -39.65 -0.40 -1.63 16 6 C -0.12 -2.10 9.74 -39.51 -0.39 -2.48 16 7 C -0.09 -1.47 5.40 -104.22 -0.56 -2.03 16 8 C -0.12 -1.99 6.11 -104.06 -0.64 -2.63 16 9 C -0.07 -1.00 6.71 -26.85 -0.18 -1.18 16 10 C -0.11 -1.41 6.78 -25.34 -0.17 -1.58 16 11 C 0.13 1.89 2.96 -67.84 -0.20 1.69 16 12 H 0.08 1.15 7.19 -51.93 -0.37 0.78 16 13 N -0.67 -11.37 6.10 -99.87 -0.61 -11.98 16 14 C 0.08 1.39 2.49 -67.71 -0.17 1.22 16 15 H 0.04 0.71 6.82 -51.93 -0.35 0.36 16 16 C -0.14 -1.98 9.40 37.16 0.35 -1.63 16 17 C -0.12 -2.40 4.74 -26.73 -0.13 -2.52 16 18 C 0.02 0.64 4.80 -27.88 -0.13 0.50 16 19 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 20 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.13 1.64 6.29 -52.49 -0.33 1.31 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 1.89 7.38 -52.49 -0.39 1.51 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.36 7.03 6.18 -39.29 -0.24 6.79 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.58 7.48 -51.93 -0.39 0.19 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.01 0.39 6.43 -51.93 -0.33 0.06 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -31.18 358.52 -9.74 -40.92 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.39 Total: 6.09 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -2.65 Total: -26.15 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.13 Total: -38.18 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -5.01 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.18 -9.74 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.649 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds