Wall clock time and date at job start Fri Apr 10 2020 19:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99796 * 2 1 4 4 C 1.38645 * 119.95384 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.87499 * 180.02562 * 4 3 2 6 6 C 1.38171 * 119.99378 * 359.97438 * 5 4 3 7 7 C 1.38505 * 120.33404 * 0.02562 * 6 5 4 8 8 C 1.38163 * 119.88297 * 359.97438 * 7 6 5 9 9 C 1.51359 * 109.77839 * 180.02562 * 8 7 6 10 10 C 1.54350 * 105.25156 * 342.77204 * 9 8 7 11 11 C 1.51380 * 130.35982 * 180.02562 * 7 6 5 12 12 H 1.09002 * 110.30408 * 316.08336 * 11 7 6 13 13 N 1.46896 * 110.30711 * 78.14301 * 11 7 6 14 14 C 1.46897 * 111.00166 * 203.14823 * 13 11 7 15 15 H 1.08999 * 109.47238 * 325.45385 * 14 13 11 16 16 C 1.53003 * 109.47285 * 85.45518 * 14 13 11 17 17 C 1.53003 * 109.46947 * 205.45611 * 14 13 11 18 18 C 1.52998 * 109.47106 * 65.00141 * 17 14 13 19 19 C 1.50701 * 109.46896 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00107 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47322 * 120.00017 * 23 21 19 26 26 H 1.48503 * 109.46975 * 240.00188 * 23 21 19 27 27 H 1.08994 * 109.47282 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47370 * 300.00025 * 1 2 3 29 29 H 1.09003 * 109.47547 * 59.99529 * 1 2 3 30 30 H 1.08000 * 120.06346 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.00360 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.83546 * 180.02562 * 6 5 4 33 33 H 1.08999 * 110.30800 * 101.74230 * 9 8 7 34 34 H 1.09002 * 110.30783 * 223.79929 * 9 8 7 35 35 H 1.09001 * 110.82073 * 144.60787 * 10 9 8 36 36 H 1.08994 * 110.82517 * 268.15994 * 10 9 8 37 37 H 1.00905 * 111.00005 * 327.10126 * 13 11 7 38 38 H 1.09004 * 109.46691 * 64.87179 * 16 14 13 39 39 H 1.09000 * 109.47055 * 184.87247 * 16 14 13 40 40 H 1.08994 * 109.46698 * 304.87389 * 16 14 13 41 41 H 1.08999 * 109.46676 * 184.99815 * 17 14 13 42 42 H 1.08999 * 109.47286 * 304.99416 * 17 14 13 43 43 H 1.08999 * 109.47087 * 299.99422 * 18 17 14 44 44 H 1.09001 * 109.47402 * 59.99977 * 18 17 14 45 45 H 0.96994 * 120.00124 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 0.0005 5 6 1.9186 3.6029 0.0000 6 6 3.2985 3.6732 -0.0005 7 6 4.0579 2.5149 -0.0011 8 6 3.4335 1.2824 -0.0005 9 6 4.4727 0.1818 -0.0007 10 6 5.7854 0.8630 -0.4424 11 6 5.5601 2.3275 -0.0012 12 1 6.0265 3.0118 -0.7100 13 7 6.1010 2.5447 1.3472 14 6 7.5226 2.9108 1.2914 15 1 8.0010 2.3851 0.4651 16 6 7.6526 4.4204 1.0790 17 6 8.2016 2.5203 2.6058 18 6 8.1813 0.9981 2.7577 19 6 8.8507 0.6135 4.0520 20 1 9.2502 1.3784 4.7014 21 6 8.9521 -0.7148 4.4075 22 7 8.4652 -1.6462 3.6170 23 14 9.7812 -1.1915 6.0122 24 1 10.2413 0.0333 6.7145 25 1 8.8146 -1.9216 6.8710 26 1 10.9475 -2.0651 5.7262 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2113 2.3168 0.0005 31 1 1.3316 4.5094 0.0008 32 1 3.7874 4.6361 -0.0005 33 1 4.5815 -0.2358 1.0003 34 1 4.1956 -0.6000 -0.7079 35 1 6.6406 0.4282 0.0750 36 1 5.9111 0.7981 -1.5231 37 1 5.5670 3.2428 1.8429 38 1 7.2514 4.9452 1.9461 39 1 8.7034 4.6802 0.9512 40 1 7.0955 4.7112 0.1885 41 1 9.2336 2.8711 2.5997 42 1 7.6679 2.9760 3.4398 43 1 7.1493 0.6473 2.7638 44 1 8.7151 0.5425 1.9237 45 1 8.5362 -2.5806 3.8673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:36:47 Heat of formation + Delta-G solvation = -26.764876 kcal Electronic energy + Delta-G solvation = -23168.268143 eV Core-core repulsion = 19957.096144 eV Total energy + Delta-G solvation = -3211.172000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56591 -38.59082 -36.73353 -34.85057 -32.95622 -31.19839 -29.77680 -29.14524 -28.52546 -27.14722 -25.65984 -24.84907 -22.35636 -21.41309 -21.00039 -20.14118 -19.53065 -17.53805 -16.41539 -16.09846 -15.97092 -15.65692 -15.38583 -14.79434 -14.39428 -14.27185 -13.98320 -13.40578 -13.20453 -12.77084 -12.65114 -12.49306 -12.32231 -12.18159 -11.95906 -11.53318 -11.48645 -11.19125 -11.12119 -10.96238 -10.92403 -10.86728 -10.73256 -10.63248 -10.38468 -10.13335 -9.58747 -9.16510 -8.83805 -8.67823 -8.18564 -8.07783 -7.78201 -5.84415 -3.84920 1.31025 1.46706 3.26776 3.39074 3.46413 3.50448 3.72150 4.44022 4.57902 4.68936 4.71730 4.86707 4.96342 5.00902 5.13730 5.27986 5.32558 5.34572 5.41140 5.51326 5.54919 5.57222 5.59921 5.71355 5.87562 5.89562 6.04835 6.14739 6.25197 6.30430 6.34105 6.42144 6.46357 6.52025 6.59144 6.69880 6.76041 6.82598 6.94884 7.36546 7.39311 7.57209 7.86439 7.89979 8.13039 8.28679 8.62714 9.24179 9.77467 11.26640 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.004107 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.480018 B = 6816.701334 C = 7973.454805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.090 4.090 6 C -0.139 4.139 7 C -0.062 4.062 8 C -0.101 4.101 9 C -0.066 4.066 10 C -0.113 4.113 11 C 0.129 3.871 12 H 0.050 0.950 13 N -0.656 5.656 14 C 0.083 3.917 15 H 0.073 0.927 16 C -0.181 4.181 17 C -0.097 4.097 18 C 0.030 3.970 19 C -0.517 4.517 20 H 0.050 0.950 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.885 3.115 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.286 1.286 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.337 0.663 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.007 0.993 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 9.423 -11.146 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.087 3.913 4 C -0.227 4.227 5 C -0.108 4.108 6 C -0.158 4.158 7 C -0.062 4.062 8 C -0.102 4.102 9 C -0.103 4.103 10 C -0.151 4.151 11 C 0.019 3.981 12 H 0.068 0.932 13 N -0.287 5.287 14 C -0.027 4.027 15 H 0.091 0.909 16 C -0.240 4.240 17 C -0.135 4.135 18 C -0.008 4.008 19 C -0.556 4.556 20 H 0.069 0.931 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.713 3.287 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.025 0.975 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.597 8.366 -11.043 20.125 hybrid contribution -0.028 0.824 0.642 1.045 sum -14.625 9.190 -10.401 20.163 Atomic orbital electron populations 1.23018 0.78926 1.03757 1.01021 1.86121 1.20876 1.27010 1.88725 1.18645 0.90880 0.84225 0.97566 1.21071 0.99614 0.92280 1.09699 1.20712 0.94142 0.96825 0.99086 1.20517 0.93453 0.97415 1.04409 1.20523 0.95674 0.92377 0.97649 1.20001 0.90386 0.97006 1.02803 1.20870 0.91270 0.95236 1.02937 1.22425 0.98815 0.94081 0.99757 1.21008 0.88400 0.97264 0.91415 0.93237 1.60656 1.02756 1.51261 1.14041 1.21810 0.88271 0.92011 1.00571 0.90856 1.22546 1.01902 0.98828 1.00691 1.21619 0.97248 1.01191 0.93481 1.19004 0.97973 0.88219 0.95555 1.21392 1.36796 0.91724 1.05645 0.93150 1.24981 0.95887 0.96829 0.96665 1.69978 1.46472 1.00057 1.36859 0.86655 0.79255 0.78408 0.84362 1.19926 1.21174 1.21217 0.88398 0.92808 0.92965 0.85617 0.85917 0.86469 0.89158 0.91344 0.88531 0.91713 0.84449 0.92753 0.92323 0.93773 0.93578 0.93538 0.94782 0.97485 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.23 10.44 -19.42 -0.20 -4.43 16 3 C 0.13 1.86 6.69 -39.17 -0.26 1.59 16 4 C -0.21 -2.44 9.03 -39.47 -0.36 -2.79 16 5 C -0.09 -1.00 10.04 -39.65 -0.40 -1.40 16 6 C -0.14 -1.71 10.04 -39.51 -0.40 -2.11 16 7 C -0.06 -0.88 5.46 -104.22 -0.57 -1.45 16 8 C -0.10 -1.54 6.11 -104.06 -0.64 -2.18 16 9 C -0.07 -1.05 6.70 -26.85 -0.18 -1.23 16 10 C -0.11 -1.74 6.66 -25.18 -0.17 -1.91 16 11 C 0.13 1.89 2.95 -67.69 -0.20 1.69 16 12 H 0.05 0.68 7.21 -51.93 -0.37 0.31 16 13 N -0.66 -10.81 5.52 -99.71 -0.55 -11.36 16 14 C 0.08 1.38 2.44 -67.71 -0.17 1.22 16 15 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 16 C -0.18 -2.44 9.16 37.16 0.34 -2.10 16 17 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 18 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 19 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 23 Si 0.88 22.24 29.54 -169.99 -5.02 17.22 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.75 8.09 -51.93 -0.42 1.33 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.34 5.26 8.16 -39.29 -0.32 4.94 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.53 7.44 -51.93 -0.39 0.15 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -31.93 362.91 -9.87 -41.79 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.62 Total: 2.70 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -2.67 Total: -24.70 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.19 Total: -38.04 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.93 -9.87 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds