Wall clock time and date at job start Fri Apr 10 2020 19:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99796 * 2 1 4 4 C 1.38645 * 119.95384 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.87499 * 180.02562 * 4 3 2 6 6 C 1.38171 * 119.99378 * 359.97438 * 5 4 3 7 7 C 1.38505 * 120.33404 * 0.02562 * 6 5 4 8 8 C 1.38163 * 119.88297 * 359.97438 * 7 6 5 9 9 C 1.51359 * 109.77839 * 180.02562 * 8 7 6 10 10 C 1.54350 * 105.25156 * 342.77204 * 9 8 7 11 11 C 1.51380 * 130.35982 * 180.02562 * 7 6 5 12 12 H 1.09002 * 110.30408 * 316.08336 * 11 7 6 13 13 N 1.46896 * 110.30711 * 78.14301 * 11 7 6 14 14 C 1.46897 * 111.00166 * 203.14823 * 13 11 7 15 15 H 1.08999 * 109.47238 * 325.45385 * 14 13 11 16 16 C 1.53003 * 109.47285 * 85.45518 * 14 13 11 17 17 C 1.53003 * 109.46947 * 205.45611 * 14 13 11 18 18 C 1.52998 * 109.47106 * 65.00141 * 17 14 13 19 19 C 1.50701 * 109.46896 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00107 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47341 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47322 * 120.00017 * 23 21 19 26 26 H 1.48503 * 109.46975 * 240.00188 * 23 21 19 27 27 H 1.08994 * 109.47282 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47370 * 300.00025 * 1 2 3 29 29 H 1.09003 * 109.47547 * 59.99529 * 1 2 3 30 30 H 1.08000 * 120.06346 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.00360 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.83546 * 180.02562 * 6 5 4 33 33 H 1.08999 * 110.30800 * 101.74230 * 9 8 7 34 34 H 1.09002 * 110.30783 * 223.79929 * 9 8 7 35 35 H 1.09001 * 110.82073 * 144.60787 * 10 9 8 36 36 H 1.08994 * 110.82517 * 268.15994 * 10 9 8 37 37 H 1.00905 * 111.00005 * 327.10126 * 13 11 7 38 38 H 1.09004 * 109.46691 * 64.87179 * 16 14 13 39 39 H 1.09000 * 109.47055 * 184.87247 * 16 14 13 40 40 H 1.08994 * 109.46698 * 304.87389 * 16 14 13 41 41 H 1.08999 * 109.46676 * 184.99815 * 17 14 13 42 42 H 1.08999 * 109.47286 * 304.99416 * 17 14 13 43 43 H 1.08999 * 109.47087 * 299.99422 * 18 17 14 44 44 H 1.09001 * 109.47402 * 59.99977 * 18 17 14 45 45 H 0.96994 * 120.00124 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 0.0005 5 6 1.9186 3.6029 0.0000 6 6 3.2985 3.6732 -0.0005 7 6 4.0579 2.5149 -0.0011 8 6 3.4335 1.2824 -0.0005 9 6 4.4727 0.1818 -0.0007 10 6 5.7854 0.8630 -0.4424 11 6 5.5601 2.3275 -0.0012 12 1 6.0265 3.0118 -0.7100 13 7 6.1010 2.5447 1.3472 14 6 7.5226 2.9108 1.2914 15 1 8.0010 2.3851 0.4651 16 6 7.6526 4.4204 1.0790 17 6 8.2016 2.5203 2.6058 18 6 8.1813 0.9981 2.7577 19 6 8.8507 0.6135 4.0520 20 1 9.2502 1.3784 4.7014 21 6 8.9521 -0.7148 4.4075 22 7 8.4652 -1.6462 3.6170 23 14 9.7812 -1.1915 6.0122 24 1 10.2413 0.0333 6.7145 25 1 8.8146 -1.9216 6.8710 26 1 10.9475 -2.0651 5.7262 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2113 2.3168 0.0005 31 1 1.3316 4.5094 0.0008 32 1 3.7874 4.6361 -0.0005 33 1 4.5815 -0.2358 1.0003 34 1 4.1956 -0.6000 -0.7079 35 1 6.6406 0.4282 0.0750 36 1 5.9111 0.7981 -1.5231 37 1 5.5670 3.2428 1.8429 38 1 7.2514 4.9452 1.9461 39 1 8.7034 4.6802 0.9512 40 1 7.0955 4.7112 0.1885 41 1 9.2336 2.8711 2.5997 42 1 7.6679 2.9760 3.4398 43 1 7.1493 0.6473 2.7638 44 1 8.7151 0.5425 1.9237 45 1 8.5362 -2.5806 3.8673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:36:46 Heat of formation + Delta-G solvation = -45.541034 kcal Electronic energy + Delta-G solvation = -23169.082339 eV Core-core repulsion = 19957.096144 eV Total energy + Delta-G solvation = -3211.986195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57796 -39.65241 -37.96169 -36.09490 -34.99454 -32.69265 -31.19501 -30.21111 -29.77455 -27.94816 -27.07605 -26.57314 -23.48698 -23.08990 -22.14034 -21.36764 -20.95436 -18.56147 -18.32206 -17.41433 -17.11390 -16.58732 -16.50828 -16.31624 -16.02128 -15.46238 -15.09123 -14.66205 -14.45115 -14.27684 -14.01264 -13.78654 -13.61099 -13.44791 -13.12362 -12.95867 -12.86674 -12.76677 -12.55120 -12.33674 -12.16762 -12.08263 -12.02971 -11.90662 -11.75826 -11.65852 -11.48831 -11.18540 -10.91130 -10.47017 -9.71067 -9.09265 -9.01180 -8.11771 -6.21895 0.32713 0.49676 1.39573 1.40225 1.53177 2.43364 2.44556 2.73404 3.20469 3.33275 3.53988 3.61945 4.02686 4.04769 4.12829 4.17528 4.30942 4.32742 4.39669 4.41065 4.45920 4.51182 4.60913 4.64379 4.72406 4.81394 4.85753 4.95002 5.00904 5.06721 5.09004 5.13008 5.19794 5.27147 5.32554 5.42449 5.49454 5.50981 5.61775 5.66117 5.87045 5.92917 6.06824 6.31935 6.37549 6.49646 6.64625 6.98590 7.45975 8.99492 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.004107 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.480018 B = 6816.701334 C = 7973.454805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.117 3.883 4 C -0.205 4.205 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.070 4.070 8 C -0.134 4.134 9 C -0.062 4.062 10 C -0.112 4.112 11 C 0.136 3.864 12 H 0.067 0.933 13 N -0.677 5.677 14 C 0.091 3.909 15 H 0.062 0.938 16 C -0.168 4.168 17 C -0.087 4.087 18 C 0.041 3.959 19 C -0.542 4.542 20 H 0.054 0.946 21 C -0.001 4.001 22 N -0.931 5.931 23 Si 0.959 3.041 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.278 1.278 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.343 0.657 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.003 0.997 44 H -0.023 1.023 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 11.986 -11.150 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.072 3.928 4 C -0.224 4.224 5 C -0.099 4.099 6 C -0.160 4.160 7 C -0.071 4.071 8 C -0.136 4.136 9 C -0.099 4.099 10 C -0.150 4.150 11 C 0.027 3.973 12 H 0.085 0.915 13 N -0.308 5.308 14 C -0.019 4.019 15 H 0.081 0.919 16 C -0.227 4.227 17 C -0.125 4.125 18 C 0.004 3.996 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.198 4.198 22 N -0.572 5.572 23 Si 0.784 3.216 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.131 0.869 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.021 0.979 44 H -0.004 1.004 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.868 10.946 -11.048 22.218 hybrid contribution 0.268 -0.036 0.626 0.682 sum -15.599 10.910 -10.422 21.702 Atomic orbital electron populations 1.23323 0.76569 1.05330 1.02315 1.86083 1.23454 1.27325 1.88785 1.18879 0.90704 0.85350 0.97893 1.21440 1.01008 0.91591 1.08319 1.21177 0.93947 0.97919 0.96870 1.20819 0.94090 0.97446 1.03617 1.20516 0.94997 0.92909 0.98637 1.20033 0.91192 0.96846 1.05487 1.20702 0.92514 0.96088 1.00639 1.22374 0.97015 0.95101 1.00526 1.20906 0.89361 0.96423 0.90634 0.91519 1.60491 1.02740 1.51955 1.15663 1.21575 0.88105 0.94604 0.97603 0.91945 1.22388 1.02858 0.95447 1.01987 1.21445 0.98160 0.96900 0.96007 1.18805 0.95188 0.92050 0.93604 1.21855 1.37125 0.92273 1.06727 0.92767 1.25931 0.96470 0.96813 1.00579 1.70130 1.47605 1.00498 1.38989 0.85494 0.78186 0.78393 0.79533 1.18646 1.20628 1.20385 0.86919 0.91814 0.91173 0.82774 0.82286 0.84189 0.93135 0.91202 0.92260 0.89640 0.83810 0.92015 0.91607 0.91675 0.93156 0.93657 0.97897 1.00431 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -9.26 10.44 -92.41 -0.97 -10.23 16 3 C 0.12 3.24 6.69 22.54 0.15 3.39 16 4 C -0.20 -4.27 9.03 22.34 0.20 -4.06 16 5 C -0.08 -1.52 10.04 22.23 0.22 -1.29 16 6 C -0.14 -3.08 10.04 22.32 0.22 -2.85 16 7 C -0.07 -1.95 5.46 -19.60 -0.11 -2.06 16 8 C -0.13 -4.22 6.11 -19.50 -0.12 -4.34 16 9 C -0.06 -2.17 6.70 30.52 0.20 -1.97 16 10 C -0.11 -3.72 6.66 31.60 0.21 -3.51 16 11 C 0.14 4.03 2.95 44.93 0.13 4.16 16 12 H 0.07 1.74 7.21 -2.39 -0.02 1.72 16 13 N -0.68 -22.72 5.52 -469.38 -2.59 -25.31 16 14 C 0.09 3.04 2.44 44.92 0.11 3.15 16 15 H 0.06 2.22 7.76 -2.39 -0.02 2.20 16 16 C -0.17 -4.15 9.16 71.98 0.66 -3.49 16 17 C -0.09 -3.69 4.83 30.59 0.15 -3.54 16 18 C 0.04 2.25 4.86 29.85 0.15 2.39 16 19 C -0.54 -32.37 9.11 25.60 0.23 -32.14 16 20 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 21 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 22 N -0.93 -59.34 13.29 21.45 0.28 -59.05 16 23 Si 0.96 46.27 29.54 68.60 2.03 48.29 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 0.86 7.66 -2.38 -0.02 0.85 16 29 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 30 H 0.15 2.23 6.29 -2.91 -0.02 2.21 16 31 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 37 H 0.34 10.56 8.16 -89.69 -0.73 9.83 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.36 7.44 -2.39 -0.02 1.35 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.00 0.16 7.75 -2.39 -0.02 0.14 16 44 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.69 362.91 2.97 -69.72 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.23 Total: 20.90 kcal Atomic # 6 Polarization: -48.32 SS G_CDS: 3.99 Total: -44.33 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.30 Total: -84.36 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.97 Total: -10.23 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.69 2.97 -69.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.178 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds