Wall clock time and date at job start Fri Apr 10 2020 19:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99845 * 2 1 4 4 C 1.38746 * 120.09306 * 359.97030 * 3 2 1 5 5 C 1.38004 * 119.88263 * 180.02562 * 4 3 2 6 6 C 1.38359 * 120.35339 * 0.02775 * 5 4 3 7 7 C 1.38499 * 119.90297 * 359.95078 * 6 5 4 8 8 C 1.38409 * 119.87451 * 0.04715 * 7 6 5 9 9 C 1.51385 * 109.78571 * 180.02562 * 7 6 5 10 10 C 1.54335 * 105.17423 * 342.81883 * 9 7 6 11 11 C 1.51390 * 130.48447 * 180.02562 * 6 5 4 12 12 H 1.09007 * 110.29865 * 316.11198 * 11 6 5 13 13 N 1.46895 * 110.30490 * 78.16846 * 11 6 5 14 14 C 1.46907 * 111.00169 * 201.39754 * 13 11 6 15 15 H 1.08998 * 109.46585 * 324.98592 * 14 13 11 16 16 C 1.52996 * 109.47118 * 84.97611 * 14 13 11 17 17 C 1.52989 * 109.47203 * 204.98306 * 14 13 11 18 18 C 1.53000 * 109.47596 * 64.99810 * 17 14 13 19 19 C 1.50694 * 109.47387 * 180.02562 * 18 17 14 20 20 H 1.07993 * 120.00378 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00017 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99610 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00064 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47350 * 89.99340 * 23 21 19 25 25 H 1.48498 * 109.46734 * 209.99515 * 23 21 19 26 26 H 1.48507 * 109.46888 * 329.99038 * 23 21 19 27 27 H 1.09002 * 109.47222 * 60.00917 * 1 2 3 28 28 H 1.09000 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47714 * 300.00004 * 1 2 3 30 30 H 1.08003 * 120.06062 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.86005 * 179.97438 * 5 4 3 32 32 H 1.07994 * 119.91354 * 179.97438 * 8 7 6 33 33 H 1.09006 * 110.29350 * 223.89903 * 9 7 6 34 34 H 1.09002 * 110.30533 * 101.75304 * 9 7 6 35 35 H 1.09000 * 110.82396 * 268.14671 * 10 9 7 36 36 H 1.08998 * 110.82178 * 144.59668 * 10 9 7 37 37 H 1.00896 * 111.00082 * 325.34461 * 13 11 6 38 38 H 1.09001 * 109.47053 * 64.71699 * 16 14 13 39 39 H 1.08999 * 109.47278 * 184.71208 * 16 14 13 40 40 H 1.08998 * 109.47696 * 304.71852 * 16 14 13 41 41 H 1.09002 * 109.47297 * 184.99634 * 17 14 13 42 42 H 1.09006 * 109.47538 * 304.99501 * 17 14 13 43 43 H 1.09002 * 109.46654 * 300.00218 * 18 17 14 44 44 H 1.08996 * 109.46825 * 59.99454 * 18 17 14 45 45 H 0.97004 * 119.99517 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 -0.0006 5 6 1.9232 3.6030 -0.0012 6 6 3.3047 3.6789 -0.0016 7 6 4.0599 2.5180 -0.0006 8 6 3.4299 1.2856 0.0000 9 6 5.5334 2.8653 -0.0008 10 6 5.6002 4.3427 -0.4421 11 6 4.2229 4.8826 -0.0018 12 1 3.8662 5.6303 -0.7102 13 7 4.3080 5.4589 1.3467 14 6 4.7476 6.8597 1.2938 15 1 5.4625 6.9856 0.4807 16 6 3.5379 7.7651 1.0538 17 6 5.4115 7.2362 2.6197 18 6 6.6911 6.4171 2.8002 19 6 7.3447 6.7876 4.1065 20 1 6.8930 7.5331 4.7441 21 6 8.5201 6.1755 4.4873 22 7 9.0704 5.2680 3.7107 23 14 9.3307 6.6353 6.1063 24 1 8.8135 5.7566 7.1859 25 1 10.8011 6.4635 5.9898 26 1 9.0218 8.0514 6.4298 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2135 2.3221 -0.0007 31 1 1.3361 4.5095 -0.0021 32 1 4.0182 0.3800 0.0004 33 1 6.0705 2.2343 -0.7091 34 1 5.9493 2.7503 1.0002 35 1 5.7189 4.4193 -1.5229 36 1 6.4047 4.8656 0.0752 37 1 3.4276 5.3744 1.8323 38 1 2.8622 7.7024 1.9069 39 1 3.8734 8.7949 0.9312 40 1 3.0160 7.4431 0.1527 41 1 5.6577 8.2981 2.6141 42 1 4.7268 7.0264 3.4415 43 1 6.4448 5.3552 2.8058 44 1 7.3757 6.6269 1.9785 45 1 9.8971 4.8371 3.9788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:37:12 Heat of formation + Delta-G solvation = -45.954191 kcal Electronic energy + Delta-G solvation = -22962.535422 eV Core-core repulsion = 19750.531311 eV Total energy + Delta-G solvation = -3212.004111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51068 -39.87079 -37.99733 -35.72629 -34.89331 -32.94141 -31.63228 -30.06991 -29.47415 -28.21170 -26.99498 -26.26628 -23.79645 -23.19503 -21.89245 -21.36842 -20.89667 -18.54745 -18.34247 -17.40528 -17.20473 -16.66969 -16.51177 -16.43811 -15.74621 -15.45466 -14.93533 -14.64129 -14.40191 -14.24353 -14.11461 -13.99718 -13.62142 -13.45213 -13.15190 -12.98657 -12.87365 -12.81625 -12.61279 -12.34507 -12.20626 -12.17367 -12.08023 -11.80822 -11.56089 -11.54163 -11.44972 -11.17800 -10.91096 -10.45438 -9.74653 -9.27341 -8.87357 -8.11126 -6.20857 0.36805 0.41903 1.40128 1.41688 1.52187 2.33209 2.44981 2.70459 3.20958 3.39180 3.60622 3.63402 3.93838 4.05604 4.13144 4.25108 4.34276 4.34924 4.37021 4.41880 4.45539 4.50308 4.58502 4.65755 4.73953 4.81389 4.83243 5.00156 5.02236 5.05035 5.10995 5.12333 5.20521 5.26392 5.32426 5.36332 5.44558 5.51275 5.62374 5.75482 5.76951 5.93932 6.07811 6.34838 6.38615 6.46533 6.66956 6.99153 7.46634 8.99723 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.003601 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.126939 B = 7773.884906 C = 8441.780883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.123 3.877 4 C -0.209 4.209 5 C -0.060 4.060 6 C -0.145 4.145 7 C -0.048 4.048 8 C -0.164 4.164 9 C -0.075 4.075 10 C -0.113 4.113 11 C 0.140 3.860 12 H 0.061 0.939 13 N -0.677 5.677 14 C 0.091 3.909 15 H 0.063 0.937 16 C -0.169 4.169 17 C -0.088 4.088 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.053 0.947 21 C 0.000 4.000 22 N -0.929 5.929 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.264 1.264 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.341 0.659 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.004 0.996 44 H -0.022 1.022 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.343 -5.612 -11.478 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.079 4.079 6 C -0.146 4.146 7 C -0.049 4.049 8 C -0.183 4.183 9 C -0.112 4.112 10 C -0.151 4.151 11 C 0.031 3.969 12 H 0.079 0.921 13 N -0.309 5.309 14 C -0.019 4.019 15 H 0.081 0.919 16 C -0.227 4.227 17 C -0.126 4.126 18 C 0.005 3.995 19 C -0.581 4.581 20 H 0.071 0.929 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.783 3.217 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.189 1.189 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.160 0.840 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.023 0.977 44 H -0.004 1.004 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.489 -6.149 -11.372 22.560 hybrid contribution 0.019 0.469 0.663 0.812 sum -18.470 -5.680 -10.709 22.092 Atomic orbital electron populations 1.23354 0.76287 1.05573 1.02364 1.86036 1.23615 1.26691 1.88722 1.18922 0.91895 0.85002 0.96394 1.21323 1.01073 0.91236 1.09122 1.20586 0.92535 0.98225 0.96538 1.20600 0.93859 0.95110 1.05043 1.20529 0.96333 0.92563 0.95429 1.19922 0.92111 0.97672 1.08560 1.20955 0.91661 0.96946 1.01660 1.22326 0.97134 0.94969 1.00639 1.20779 0.93018 0.92866 0.90256 0.92141 1.60515 1.36042 1.17855 1.16478 1.21551 0.96141 0.86718 0.97447 0.91916 1.22389 0.98023 1.00461 1.01860 1.21451 0.96928 0.98276 0.95937 1.18783 0.91773 0.95416 0.93484 1.21822 1.07898 1.21996 1.06380 0.92891 1.25918 0.98047 0.95140 1.00679 1.70118 1.20027 1.27852 1.39007 0.85562 0.77456 0.78928 0.79763 1.20061 1.20795 1.18878 0.91390 0.86377 0.91791 0.82636 0.83901 0.85482 0.89693 0.91923 0.89539 0.92190 0.83974 0.92106 0.91704 0.91741 0.93308 0.93727 0.97743 1.00400 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.42 10.50 -92.41 -0.97 -8.39 16 3 C 0.12 3.02 6.68 22.48 0.15 3.17 16 4 C -0.21 -4.30 9.04 22.34 0.20 -4.09 16 5 C -0.06 -1.33 10.02 22.24 0.22 -1.10 16 6 C -0.15 -3.92 5.49 -19.55 -0.11 -4.03 16 7 C -0.05 -1.40 6.14 -19.54 -0.12 -1.52 16 8 C -0.16 -4.55 9.98 22.40 0.22 -4.32 16 9 C -0.08 -2.34 6.77 30.52 0.21 -2.14 16 10 C -0.11 -3.48 6.57 31.50 0.21 -3.27 16 11 C 0.14 3.98 2.96 44.85 0.13 4.11 16 12 H 0.06 1.53 7.17 -2.38 -0.02 1.51 16 13 N -0.68 -22.11 5.50 -469.84 -2.58 -24.69 16 14 C 0.09 3.00 2.37 44.91 0.11 3.11 16 15 H 0.06 2.19 7.57 -2.39 -0.02 2.17 16 16 C -0.17 -4.13 9.16 71.98 0.66 -3.47 16 17 C -0.09 -3.68 4.83 30.59 0.15 -3.53 16 18 C 0.04 2.32 4.86 29.85 0.15 2.46 16 19 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 20 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 21 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 22 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 23 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 27 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 28 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 30 H 0.16 2.18 6.31 -2.91 -0.02 2.16 16 31 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.28 7.86 -2.39 -0.02 2.26 16 37 H 0.34 10.30 8.19 -89.70 -0.73 9.57 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.34 7.39 -2.39 -0.02 1.32 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 44 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 45 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.09 362.40 2.97 -67.12 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.23 Total: 20.89 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 3.98 Total: -44.75 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.30 Total: -82.78 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.97 Total: -8.39 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -70.09 2.97 -67.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.171 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds