Wall clock time and date at job start Fri Apr 10 2020 19:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46524 * 2 1 4 4 C 1.52995 * 109.46943 * 240.00054 * 2 1 3 5 5 C 1.53006 * 109.46882 * 174.99957 * 4 2 1 6 6 C 1.50699 * 109.46904 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00662 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00069 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00038 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46877 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46796 * 119.99753 * 10 8 6 13 13 H 1.48494 * 109.47038 * 239.99864 * 10 8 6 14 14 N 1.46900 * 109.47023 * 119.99854 * 2 1 3 15 15 C 1.46904 * 110.99978 * 280.28100 * 14 2 1 16 16 H 1.09004 * 109.25120 * 9.92492 * 15 14 2 17 17 C 1.50626 * 109.25506 * 250.45316 * 15 14 2 18 18 C 1.38916 * 117.75157 * 42.17237 * 17 15 14 19 19 C 1.37929 * 120.54381 * 179.97438 * 18 17 15 20 20 C 1.38259 * 119.77116 * 359.39469 * 19 18 17 21 21 C 1.37936 * 119.77606 * 0.40585 * 20 19 18 22 22 C 1.37663 * 122.56557 * 221.80035 * 17 15 14 23 23 C 1.50633 * 122.55804 * 0.85257 * 22 17 15 24 24 C 1.52735 * 110.59847 * 342.19332 * 23 22 17 25 25 C 1.52733 * 109.25162 * 129.36553 * 15 14 2 26 26 H 1.08997 * 109.68842 * 51.69380 * 25 15 14 27 27 O 1.42903 * 109.68400 * 291.16811 * 25 15 14 28 28 H 1.09011 * 109.46976 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47419 * 299.99536 * 1 2 3 30 30 H 1.09001 * 109.47428 * 60.00642 * 1 2 3 31 31 H 1.09003 * 109.47399 * 294.99240 * 4 2 1 32 32 H 1.09003 * 109.47531 * 54.99806 * 4 2 1 33 33 H 1.08996 * 109.46890 * 299.99751 * 5 4 2 34 34 H 1.08991 * 109.47213 * 59.99987 * 5 4 2 35 35 H 0.97005 * 120.00323 * 180.02562 * 9 8 6 36 36 H 1.00901 * 110.99939 * 44.23545 * 14 2 1 37 37 H 1.08007 * 119.72747 * 359.70639 * 18 17 15 38 38 H 1.08002 * 120.11844 * 179.67808 * 19 18 17 39 39 H 1.07998 * 120.11838 * 180.38398 * 20 19 18 40 40 H 1.08000 * 119.73046 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.24703 * 102.47839 * 23 22 17 42 42 H 1.09001 * 109.24889 * 221.90017 * 23 22 17 43 43 H 1.09000 * 109.68210 * 291.33632 * 24 23 22 44 44 H 1.09004 * 109.70141 * 170.81375 * 24 23 22 45 45 H 0.96698 * 114.00012 * 180.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3231 -2.5445 7 1 3.3687 -1.8036 -3.2136 8 6 5.4183 -1.3591 -2.8163 9 7 6.2688 -0.7736 -2.0019 10 14 6.0410 -2.2397 -4.3416 11 1 4.8911 -2.8112 -5.0873 12 1 6.7632 -1.2752 -5.2097 13 1 6.9637 -3.3318 -3.9406 14 7 2.0197 -0.6925 1.1995 15 6 1.9644 0.1873 2.3747 16 1 1.4097 1.0908 2.1214 17 6 3.3655 0.5620 2.7810 18 6 4.2669 0.8836 1.7741 19 6 5.5647 1.2356 2.0812 20 6 5.9693 1.2811 3.4025 21 6 5.0747 0.9661 4.4041 22 6 3.7700 0.6019 4.0963 23 6 2.8503 0.2560 5.2380 24 6 1.3919 0.3044 4.7869 25 6 1.2510 -0.5383 3.5137 26 1 1.7062 -1.5166 3.6681 27 8 -0.1323 -0.6965 3.1920 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8531 0.4370 -1.3573 34 1 3.9994 -1.0727 -0.4260 35 1 7.2195 -0.7986 -2.1933 36 1 1.5039 -1.5445 1.3610 37 1 3.9500 0.8536 0.7420 38 1 6.2612 1.4794 1.2926 39 1 6.9824 1.5621 3.6496 40 1 5.3915 1.0022 5.4359 41 1 3.0829 -0.7471 5.5955 42 1 2.9997 0.9694 6.0486 43 1 1.1062 1.3353 4.5783 44 1 0.7515 -0.1028 5.5694 45 1 -0.6454 -1.1504 3.8745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:37:19 Heat of formation + Delta-G solvation = -66.849647 kcal Electronic energy + Delta-G solvation = -23923.459241 eV Core-core repulsion = 20710.549035 eV Total energy + Delta-G solvation = -3212.910206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27077 -38.77425 -37.80641 -35.40626 -35.11208 -33.55707 -31.74311 -30.51121 -30.11144 -27.90307 -26.91477 -24.15923 -23.59710 -23.30018 -22.46179 -21.38211 -20.36026 -18.51677 -18.32495 -17.30863 -16.80407 -16.49344 -16.34881 -15.90472 -15.44751 -14.99888 -14.90796 -14.67298 -14.46351 -14.37754 -14.06198 -13.89731 -13.51192 -13.50017 -13.33193 -13.10546 -12.93550 -12.87299 -12.60548 -12.30222 -12.25098 -12.04150 -11.92249 -11.64268 -11.52354 -11.34635 -11.08347 -10.90963 -10.79790 -10.47359 -9.54120 -9.41147 -9.15059 -8.11783 -6.21892 0.52494 0.60570 1.38570 1.38860 1.51861 2.43584 2.88271 3.17869 3.19962 3.31055 3.72141 3.89714 4.04142 4.08237 4.17211 4.21675 4.28028 4.31269 4.41849 4.47140 4.50369 4.56490 4.73545 4.78071 4.79251 4.89700 5.00765 5.01768 5.05984 5.07911 5.10727 5.25645 5.28622 5.31526 5.36146 5.48689 5.60277 5.66568 5.78673 5.83813 5.91385 6.04931 6.21867 6.29154 6.36781 6.63830 6.93417 6.97189 7.45495 8.98722 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.005237 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.819732 B = 5345.503484 C = 6807.452032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.095 3.905 3 H 0.051 0.949 4 C -0.091 4.091 5 C 0.046 3.954 6 C -0.543 4.543 7 H 0.052 0.948 8 C 0.002 3.998 9 N -0.926 5.926 10 Si 0.957 3.043 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.676 5.676 15 C 0.140 3.860 16 H 0.059 0.941 17 C -0.078 4.078 18 C -0.107 4.107 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.087 4.087 23 C -0.072 4.072 24 C -0.138 4.138 25 C 0.103 3.897 26 H 0.064 0.936 27 O -0.574 6.574 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.047 0.953 33 H -0.025 1.025 34 H 0.008 0.992 35 H 0.259 0.741 36 H 0.346 0.654 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 2.479 18.589 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.009 3.991 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.195 4.195 9 N -0.566 5.566 10 Si 0.783 3.217 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.205 1.205 14 N -0.307 5.307 15 C 0.030 3.970 16 H 0.077 0.923 17 C -0.079 4.079 18 C -0.125 4.125 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.088 4.088 23 C -0.109 4.109 24 C -0.176 4.176 25 C 0.044 3.956 26 H 0.082 0.918 27 O -0.383 6.383 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.066 0.934 33 H -0.006 1.006 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.165 0.835 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.509 2.941 17.924 20.502 hybrid contribution -0.026 -0.488 -0.888 1.013 sum -9.535 2.453 17.036 19.677 Atomic orbital electron populations 1.22330 0.95436 1.02261 1.01888 1.21562 0.93273 0.96371 0.90250 0.93042 1.21490 0.97036 0.98989 0.95370 1.18794 0.91638 0.93618 0.95086 1.21820 0.92479 1.34440 1.09416 0.92944 1.25890 0.97381 0.96490 0.99783 1.70132 1.02383 1.45415 1.38674 0.85518 0.78360 0.78350 0.79513 1.18837 1.20500 1.20521 1.60482 1.60813 1.07371 1.02056 1.20143 0.91065 0.95587 0.90184 0.92305 1.19629 0.95446 1.00202 0.92659 1.21326 0.94056 0.97450 0.99706 1.21192 0.96187 1.01628 0.97454 1.21285 1.00593 1.00195 0.92106 1.21387 0.92746 1.00424 1.00110 1.19976 0.95695 0.99535 0.93577 1.20479 0.92137 1.03348 0.94919 1.22200 0.97118 1.01065 0.97260 1.21952 0.82198 0.97970 0.93523 0.91772 1.86471 1.19918 1.82343 1.49536 0.92246 0.92006 0.92359 0.93424 0.93385 1.00635 0.97383 0.93196 0.83483 0.87883 0.88090 0.84411 0.83073 0.89282 0.88315 0.91715 0.87845 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.14 71.98 0.66 -4.00 16 2 C 0.10 3.46 1.77 44.91 0.08 3.54 16 3 H 0.05 2.04 7.25 -2.39 -0.02 2.02 16 4 C -0.09 -3.99 4.83 30.59 0.15 -3.84 16 5 C 0.05 2.53 3.77 29.85 0.11 2.64 16 6 C -0.54 -32.53 9.11 25.60 0.23 -32.30 16 7 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.00 0.14 5.46 84.66 0.46 0.60 16 9 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 10 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 11 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 N -0.68 -23.46 4.87 -473.88 -2.31 -25.77 16 15 C 0.14 4.18 1.95 44.06 0.09 4.26 16 16 H 0.06 1.87 6.95 -2.39 -0.02 1.85 16 17 C -0.08 -2.60 5.55 -19.86 -0.11 -2.71 16 18 C -0.11 -4.38 9.21 22.36 0.21 -4.17 16 19 C -0.15 -5.67 10.05 22.20 0.22 -5.45 16 20 C -0.12 -3.74 10.05 22.20 0.22 -3.52 16 21 C -0.13 -3.28 9.61 22.36 0.21 -3.06 16 22 C -0.09 -2.30 5.74 -19.86 -0.11 -2.41 16 23 C -0.07 -1.21 5.67 29.74 0.17 -1.04 16 24 C -0.14 -2.16 5.62 30.62 0.17 -1.99 16 25 C 0.10 2.17 2.64 30.61 0.08 2.25 16 26 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 27 O -0.57 -10.67 12.71 -148.98 -1.89 -12.57 16 28 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.06 1.70 7.05 -2.39 -0.02 1.69 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H -0.02 -1.50 7.58 -2.39 -0.02 -1.52 16 34 H 0.01 0.47 7.52 -2.39 -0.02 0.45 16 35 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 36 H 0.35 11.16 7.79 -89.69 -0.70 10.46 16 37 H 0.10 4.92 4.48 -2.91 -0.01 4.91 16 38 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.15 2.67 8.05 -2.91 -0.02 2.64 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.23 8.13 -2.39 -0.02 1.21 16 43 H 0.06 1.14 8.10 -2.39 -0.02 1.13 16 44 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.40 3.52 9.09 -74.06 -0.67 2.85 16 Total: -1.00 -72.52 353.00 0.56 -71.95 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.39 Total: 27.36 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 2.84 Total: -51.20 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.02 Total: -83.86 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.89 Total: -12.57 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.52 0.56 -71.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.105 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds