Wall clock time and date at job start Fri Apr 10 2020 19:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99824 * 2 1 4 4 N 1.46493 * 109.47427 * 124.99919 * 3 2 1 5 5 C 1.46494 * 120.00444 * 269.72511 * 4 3 2 6 6 C 1.50694 * 109.47248 * 270.27463 * 5 4 3 7 7 H 1.07999 * 119.99904 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00385 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00419 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99411 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47279 * 90.00270 * 10 8 6 12 12 H 1.48505 * 109.46775 * 209.99777 * 10 8 6 13 13 H 1.48495 * 109.47628 * 329.99523 * 10 8 6 14 14 C 1.34784 * 119.99864 * 89.99800 * 4 3 2 15 15 O 1.21279 * 119.99925 * 179.72608 * 14 4 3 16 16 C 1.50700 * 119.99961 * 359.72839 * 14 4 3 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 4 18 18 N 1.31832 * 119.65933 * 89.99875 * 17 16 14 19 19 C 1.31847 * 121.78288 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.88554 * 0.02562 * 19 18 17 21 21 C 1.38533 * 119.21912 * 359.97438 * 20 19 18 22 22 C 1.38702 * 119.65373 * 269.72608 * 17 16 14 23 23 O 1.35917 * 120.47803 * 359.97438 * 22 17 16 24 24 C 1.42901 * 117.00059 * 180.02562 * 23 22 17 25 25 H 1.08001 * 119.99797 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99725 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00333 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47046 * 4.99693 * 3 2 1 29 29 H 1.08996 * 109.46984 * 245.00291 * 3 2 1 30 30 H 1.09003 * 109.47006 * 30.27410 * 5 4 3 31 31 H 1.09004 * 109.47665 * 150.27102 * 5 4 3 32 32 H 0.96993 * 119.99970 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46932 * 300.00223 * 16 14 4 34 34 H 1.08997 * 109.47392 * 59.99562 * 16 14 4 35 35 H 1.07998 * 119.56226 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.38943 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.81921 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.47049 * 300.00387 * 24 23 22 39 39 H 1.08995 * 109.46691 * 60.00547 * 24 23 22 40 40 H 1.09000 * 109.46769 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5608 1.8706 2.4231 6 6 2.8454 3.3496 2.4715 7 1 3.3034 3.8394 1.6249 8 6 2.5211 4.0777 3.5967 9 7 2.7700 5.3683 3.6391 10 14 1.7296 3.2304 5.0612 11 1 2.7874 2.7450 5.9835 12 1 0.8534 4.1931 5.7759 13 1 0.9186 2.0797 4.5887 14 6 4.2498 0.8663 0.9823 15 8 5.0214 0.8931 1.9176 16 6 4.6952 0.3123 -0.3465 17 6 6.1298 -0.1383 -0.2474 18 7 6.4012 -1.3769 0.1134 19 6 7.6405 -1.8155 0.2131 20 6 8.7115 -0.9846 -0.0592 21 6 8.4712 0.3250 -0.4418 22 6 7.1509 0.7529 -0.5423 23 8 6.8662 2.0272 -0.9197 24 6 7.9749 2.8820 -1.2064 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4910 1.7022 2.5468 31 1 3.1025 1.3699 3.2256 32 1 2.5422 5.8804 4.4308 33 1 4.0660 -0.5361 -0.6157 34 1 4.6087 1.0854 -1.1099 35 1 7.8217 -2.8376 0.5114 36 1 9.7235 -1.3521 0.0254 37 1 9.2884 0.9965 -0.6602 38 1 8.6027 2.9724 -0.3200 39 1 8.5587 2.4581 -2.0234 40 1 7.6089 3.8675 -1.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:39:48 Heat of formation + Delta-G solvation = -7.303041 kcal Electronic energy + Delta-G solvation = -23196.650715 eV Core-core repulsion = 19785.063638 eV Total energy + Delta-G solvation = -3411.587077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72750 -38.93108 -38.02481 -35.66496 -33.31376 -32.83218 -32.04673 -31.34283 -29.01991 -27.55593 -27.19759 -25.41882 -23.04332 -22.83126 -21.61516 -19.95525 -18.44734 -17.98661 -17.10585 -16.82583 -16.49352 -16.28606 -15.65849 -15.36201 -14.71298 -14.41190 -14.27381 -13.92025 -13.83987 -13.50940 -13.08697 -13.00215 -12.63850 -12.27199 -12.23971 -11.76616 -11.65007 -11.51634 -11.42941 -11.33483 -11.00612 -10.88439 -10.47542 -10.08955 -9.72446 -9.51394 -9.49219 -9.19712 -8.95464 -8.53800 -8.22852 -7.66042 -6.04059 -4.01757 1.16157 1.33976 2.43791 3.22692 3.33220 3.39155 3.41894 3.45972 3.71583 4.11058 4.41059 4.44583 4.65140 4.72530 4.97539 5.09581 5.10639 5.16034 5.27225 5.28408 5.33971 5.42523 5.46941 5.50315 5.60225 5.70681 5.91790 6.01334 6.03857 6.13051 6.21888 6.47640 6.78042 6.79391 6.92098 7.02924 7.24659 7.44264 7.67405 8.08074 8.32058 8.52932 8.99174 9.07648 9.57117 11.09414 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.005201 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.420413 B = 5382.633144 C = 6193.305932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.590 5.590 5 C 0.218 3.782 6 C -0.525 4.525 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.521 3.479 15 O -0.534 6.534 16 C -0.087 4.087 17 C 0.135 3.865 18 N -0.441 5.441 19 C 0.059 3.941 20 C -0.139 4.139 21 C -0.167 4.167 22 C 0.095 3.905 23 O -0.301 6.301 24 C 0.027 3.973 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.263 0.737 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -11.240 -13.116 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.321 5.321 5 C 0.097 3.903 6 C -0.563 4.563 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.307 3.693 15 O -0.411 6.411 16 C -0.128 4.128 17 C -0.006 4.006 18 N -0.150 5.150 19 C -0.097 4.097 20 C -0.159 4.159 21 C -0.193 4.193 22 C 0.047 3.953 23 O -0.213 6.213 24 C -0.069 4.069 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.578 -11.497 -12.317 18.088 hybrid contribution 0.663 0.350 0.695 1.022 sum 7.241 -11.147 -11.622 17.657 Atomic orbital electron populations 1.23828 0.95849 1.01755 1.00841 1.23488 0.96421 0.99199 0.99643 1.20620 0.93152 0.95325 0.89749 1.47836 1.10655 1.60580 1.13022 1.19633 0.94851 0.95001 0.80781 1.21354 1.40834 0.91105 1.03049 0.90682 1.24838 0.95349 0.94708 0.98086 1.69895 1.48101 1.06450 1.29360 0.86880 0.79881 0.79683 0.83463 1.19998 1.21109 1.18973 1.19987 0.82061 0.78187 0.89087 1.90670 1.52344 1.56080 1.41977 1.20546 0.91674 1.02326 0.98242 1.20026 0.94133 0.88348 0.98088 1.67437 1.23222 1.14266 1.10038 1.22540 0.87372 1.00315 0.99521 1.21908 1.00725 0.93643 0.99593 1.21630 0.95478 0.97776 1.04458 1.19865 0.93804 0.85427 0.96211 1.86163 1.34522 1.19025 1.81568 1.23104 0.89369 0.94153 1.00224 0.88271 0.88779 0.87542 0.89212 0.90361 0.95216 0.94686 0.92667 0.87676 0.87366 0.82688 0.84772 0.84454 0.92492 0.92884 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.01 0.42 -1.92 16 2 C -0.17 -2.36 9.74 -36.03 -0.35 -2.72 16 3 C 0.14 2.21 5.65 -5.20 -0.03 2.18 16 4 N -0.59 -12.66 2.44 -176.44 -0.43 -13.09 16 5 C 0.22 5.54 4.23 -5.20 -0.02 5.51 16 6 C -0.52 -15.40 9.94 -34.44 -0.34 -15.74 16 7 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 10 Si 0.87 22.15 27.47 -169.99 -4.67 17.49 16 11 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.52 11.35 7.66 -10.98 -0.08 11.27 16 15 O -0.53 -14.09 15.61 5.56 0.09 -14.00 16 16 C -0.09 -1.46 4.34 -29.04 -0.13 -1.58 16 17 C 0.13 2.31 5.29 -82.42 -0.44 1.87 16 18 N -0.44 -7.30 10.27 -9.36 -0.10 -7.40 16 19 C 0.06 0.78 11.18 -17.54 -0.20 0.59 16 20 C -0.14 -1.61 10.11 -39.46 -0.40 -2.01 16 21 C -0.17 -2.14 9.14 -39.13 -0.36 -2.50 16 22 C 0.10 1.51 6.67 -39.07 -0.26 1.25 16 23 O -0.30 -4.70 9.54 -19.48 -0.19 -4.89 16 24 C 0.03 0.29 9.83 101.05 0.99 1.28 16 25 H 0.10 1.23 7.84 -52.49 -0.41 0.81 16 26 H 0.09 1.02 8.06 -52.48 -0.42 0.60 16 27 H 0.11 1.42 7.81 -52.49 -0.41 1.01 16 28 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 29 H 0.08 1.08 6.44 -51.93 -0.33 0.74 16 30 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 31 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 33 H 0.11 1.50 7.75 -51.93 -0.40 1.10 16 34 H 0.11 1.61 6.77 -51.93 -0.35 1.26 16 35 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.34 6.45 -52.49 -0.34 1.00 16 38 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 39 H 0.05 0.43 7.71 -51.93 -0.40 0.03 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -37.17 342.44 -6.11 -43.27 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.46 Total: 1.23 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.29 Total: -0.46 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.25 Total: -47.80 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.10 Total: -18.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.17 -6.11 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.972 kcal (2) G-P(sol) polarization free energy of solvation -37.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds