Wall clock time and date at job start Fri Apr 10 2020 19:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99824 * 2 1 4 4 N 1.46493 * 109.47427 * 124.99919 * 3 2 1 5 5 C 1.46494 * 120.00444 * 269.72511 * 4 3 2 6 6 C 1.50694 * 109.47248 * 270.27463 * 5 4 3 7 7 H 1.07999 * 119.99904 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00385 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00419 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99411 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47279 * 90.00270 * 10 8 6 12 12 H 1.48505 * 109.46775 * 209.99777 * 10 8 6 13 13 H 1.48495 * 109.47628 * 329.99523 * 10 8 6 14 14 C 1.34784 * 119.99864 * 89.99800 * 4 3 2 15 15 O 1.21279 * 119.99925 * 179.72608 * 14 4 3 16 16 C 1.50700 * 119.99961 * 359.72839 * 14 4 3 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 4 18 18 N 1.31832 * 119.65933 * 89.99875 * 17 16 14 19 19 C 1.31847 * 121.78288 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.88554 * 0.02562 * 19 18 17 21 21 C 1.38533 * 119.21912 * 359.97438 * 20 19 18 22 22 C 1.38702 * 119.65373 * 269.72608 * 17 16 14 23 23 O 1.35917 * 120.47803 * 359.97438 * 22 17 16 24 24 C 1.42901 * 117.00059 * 180.02562 * 23 22 17 25 25 H 1.08001 * 119.99797 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99725 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00333 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47046 * 4.99693 * 3 2 1 29 29 H 1.08996 * 109.46984 * 245.00291 * 3 2 1 30 30 H 1.09003 * 109.47006 * 30.27410 * 5 4 3 31 31 H 1.09004 * 109.47665 * 150.27102 * 5 4 3 32 32 H 0.96993 * 119.99970 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46932 * 300.00223 * 16 14 4 34 34 H 1.08997 * 109.47392 * 59.99562 * 16 14 4 35 35 H 1.07998 * 119.56226 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.38943 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.81921 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.47049 * 300.00387 * 24 23 22 39 39 H 1.08995 * 109.46691 * 60.00547 * 24 23 22 40 40 H 1.09000 * 109.46769 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5608 1.8706 2.4231 6 6 2.8454 3.3496 2.4715 7 1 3.3034 3.8394 1.6249 8 6 2.5211 4.0777 3.5967 9 7 2.7700 5.3683 3.6391 10 14 1.7296 3.2304 5.0612 11 1 2.7874 2.7450 5.9835 12 1 0.8534 4.1931 5.7759 13 1 0.9186 2.0797 4.5887 14 6 4.2498 0.8663 0.9823 15 8 5.0214 0.8931 1.9176 16 6 4.6952 0.3123 -0.3465 17 6 6.1298 -0.1383 -0.2474 18 7 6.4012 -1.3769 0.1134 19 6 7.6405 -1.8155 0.2131 20 6 8.7115 -0.9846 -0.0592 21 6 8.4712 0.3250 -0.4418 22 6 7.1509 0.7529 -0.5423 23 8 6.8662 2.0272 -0.9197 24 6 7.9749 2.8820 -1.2064 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4910 1.7022 2.5468 31 1 3.1025 1.3699 3.2256 32 1 2.5422 5.8804 4.4308 33 1 4.0660 -0.5361 -0.6157 34 1 4.6087 1.0854 -1.1099 35 1 7.8217 -2.8376 0.5114 36 1 9.7235 -1.3521 0.0254 37 1 9.2884 0.9965 -0.6602 38 1 8.6027 2.9724 -0.3200 39 1 8.5587 2.4581 -2.0234 40 1 7.6089 3.8675 -1.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:39:48 Heat of formation + Delta-G solvation = -33.583203 kcal Electronic energy + Delta-G solvation = -23197.790308 eV Core-core repulsion = 19785.063638 eV Total energy + Delta-G solvation = -3412.726670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83604 -40.53107 -39.07702 -37.24444 -35.12972 -34.09627 -33.73799 -32.45406 -30.68831 -28.86408 -28.29362 -26.87122 -24.73070 -23.83847 -23.11198 -21.15451 -19.96550 -19.08970 -19.04213 -18.17394 -17.98955 -17.60539 -16.79875 -16.69306 -16.30471 -15.93965 -15.53800 -15.27782 -14.92586 -14.78290 -14.56400 -14.28050 -14.13646 -13.99582 -13.59620 -13.23385 -13.07779 -12.99255 -12.78551 -12.50576 -12.36892 -12.31973 -12.21177 -11.94284 -11.73920 -10.88732 -10.83509 -10.56096 -10.55220 -10.30298 -9.44621 -9.31427 -8.34628 -6.38783 0.11519 0.31561 1.29537 1.34224 1.35409 1.43364 1.80128 2.25521 2.29725 2.37135 2.85986 2.99569 3.31039 3.64845 3.78637 3.82968 4.07517 4.11993 4.23890 4.25617 4.31086 4.33557 4.39587 4.47681 4.53626 4.66696 4.74234 4.77200 4.89838 4.93723 5.06421 5.09940 5.11732 5.45336 5.52953 5.54685 5.74727 5.94047 6.23731 6.25895 6.61759 6.66946 7.02102 7.21052 7.41116 8.82323 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.005201 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.420413 B = 5382.633144 C = 6193.305932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.131 3.869 4 N -0.596 5.596 5 C 0.229 3.771 6 C -0.533 4.533 7 H 0.030 0.970 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.943 3.057 11 H -0.279 1.279 12 H -0.271 1.271 13 H -0.240 1.240 14 C 0.513 3.487 15 O -0.590 6.590 16 C -0.072 4.072 17 C 0.095 3.905 18 N -0.468 5.468 19 C 0.047 3.953 20 C -0.126 4.126 21 C -0.169 4.169 22 C 0.073 3.927 23 O -0.332 6.332 24 C 0.018 3.982 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.268 0.732 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.186 0.814 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -13.386 -13.684 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.009 3.991 4 N -0.326 5.326 5 C 0.107 3.893 6 C -0.571 4.571 7 H 0.049 0.951 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.766 3.234 11 H -0.204 1.204 12 H -0.196 1.196 13 H -0.164 1.164 14 C 0.302 3.698 15 O -0.471 6.471 16 C -0.112 4.112 17 C -0.044 4.044 18 N -0.177 5.177 19 C -0.110 4.110 20 C -0.145 4.145 21 C -0.195 4.195 22 C 0.025 3.975 23 O -0.244 6.244 24 C -0.077 4.077 25 H 0.119 0.881 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.203 0.797 36 H 0.195 0.805 37 H 0.185 0.815 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.629 -13.645 -12.948 19.945 hybrid contribution 0.740 1.060 0.793 1.517 sum 7.369 -12.586 -12.154 18.985 Atomic orbital electron populations 1.24071 0.95342 1.03019 0.98013 1.23305 0.96838 0.98021 1.02131 1.20869 0.92670 0.96683 0.88887 1.47939 1.11736 1.59892 1.13013 1.19263 0.95296 0.92168 0.82623 1.21536 1.40450 0.93247 1.01889 0.95146 1.25786 0.95938 0.95333 1.01354 1.70036 1.49485 1.08212 1.30628 0.85780 0.79106 0.79458 0.79032 1.20444 1.19592 1.16353 1.20903 0.81363 0.77209 0.90374 1.90617 1.53828 1.58430 1.44223 1.20435 0.92630 1.03094 0.95007 1.20081 0.94387 0.89361 1.00557 1.67386 1.25221 1.14328 1.10810 1.23199 0.86909 1.02006 0.98898 1.22403 1.02373 0.92726 0.97003 1.22072 0.95041 0.98909 1.03486 1.20092 0.94963 0.85430 0.96971 1.86104 1.36906 1.19528 1.81882 1.23375 0.88830 0.94145 1.01309 0.88132 0.86340 0.86661 0.90180 0.88041 0.93481 0.96884 0.92261 0.85425 0.86166 0.79704 0.80454 0.81528 0.92497 0.89826 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 14.32 67.78 0.97 -2.80 16 2 C -0.18 -4.85 9.74 25.64 0.25 -4.60 16 3 C 0.13 4.24 5.65 85.64 0.48 4.73 16 4 N -0.60 -26.08 2.44 -830.53 -2.03 -28.10 16 5 C 0.23 11.83 4.23 85.63 0.36 12.19 16 6 C -0.53 -32.46 9.94 25.60 0.25 -32.21 16 7 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 8 C 0.01 0.84 5.47 84.66 0.46 1.31 16 9 N -0.94 -60.67 13.96 21.45 0.30 -60.37 16 10 Si 0.94 45.99 27.47 68.60 1.88 47.87 16 11 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 14 C 0.51 23.05 7.66 87.66 0.67 23.72 16 15 O -0.59 -32.54 15.61 -3.03 -0.05 -32.59 16 16 C -0.07 -2.42 4.34 29.10 0.13 -2.29 16 17 C 0.10 3.29 5.29 42.67 0.23 3.51 16 18 N -0.47 -15.29 10.27 -183.51 -1.88 -17.18 16 19 C 0.05 1.16 11.18 84.70 0.95 2.11 16 20 C -0.13 -2.55 10.11 22.35 0.23 -2.33 16 21 C -0.17 -4.01 9.14 22.56 0.21 -3.80 16 22 C 0.07 2.32 6.67 22.60 0.15 2.47 16 23 O -0.33 -10.53 9.54 -92.62 -0.88 -11.41 16 24 C 0.02 0.37 9.83 113.37 1.11 1.49 16 25 H 0.10 2.25 7.84 -2.91 -0.02 2.23 16 26 H 0.12 2.14 8.06 -2.91 -0.02 2.11 16 27 H 0.12 2.86 7.81 -2.91 -0.02 2.83 16 28 H 0.08 2.72 7.72 -2.39 -0.02 2.70 16 29 H 0.10 2.75 6.44 -2.39 -0.02 2.73 16 30 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 31 H 0.01 0.73 6.85 -2.38 -0.02 0.72 16 32 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.13 3.58 7.75 -2.38 -0.02 3.57 16 34 H 0.12 3.65 6.77 -2.39 -0.02 3.63 16 35 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.17 2.79 6.45 -2.91 -0.02 2.77 16 38 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 39 H 0.08 1.21 7.71 -2.39 -0.02 1.19 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -85.55 342.44 4.77 -80.78 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.98 Total: 17.50 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.45 Total: 3.49 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.61 Total: -105.65 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.93 Total: -44.01 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Total: -85.55 4.77 -80.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.197 kcal (2) G-P(sol) polarization free energy of solvation -85.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds