Wall clock time and date at job start Fri Apr 10 2020 19:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00083 * 2 1 4 4 H 1.48498 * 109.47027 * 270.00413 * 3 2 1 5 5 H 1.48501 * 109.47139 * 30.00207 * 3 2 1 6 6 H 1.48494 * 109.47023 * 150.00036 * 3 2 1 7 7 C 1.37880 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99933 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53976 * 59.89733 * 9 7 2 11 11 C 1.53127 * 109.50186 * 299.79966 * 9 7 2 12 12 C 1.53123 * 109.15019 * 182.40207 * 11 9 7 13 13 C 1.53034 * 109.27992 * 57.67185 * 12 11 9 14 14 N 1.46847 * 109.51345 * 300.80438 * 13 12 11 15 15 C 1.38925 * 110.99972 * 185.84724 * 14 13 12 16 16 N 1.33229 * 120.63855 * 123.66946 * 15 14 13 17 17 C 1.31752 * 121.05154 * 179.71035 * 16 15 14 18 18 N 1.31919 * 122.02520 * 0.60112 * 17 16 15 19 19 C 1.32871 * 120.55388 * 359.75999 * 18 17 16 20 20 C 1.39170 * 119.37963 * 359.87462 * 19 18 17 21 21 O 1.35771 * 121.13698 * 180.28245 * 20 19 18 22 22 C 1.43074 * 117.54758 * 340.28769 * 21 20 19 23 23 C 1.53529 * 108.78831 * 48.64982 * 22 21 20 24 24 N 1.39163 * 120.82671 * 179.78315 * 19 18 17 25 25 C 1.46843 * 111.20124 * 61.74903 * 14 13 12 26 26 H 0.97000 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.52393 * 302.31016 * 11 9 7 28 28 H 1.08997 * 109.52177 * 62.44105 * 11 9 7 29 29 H 1.08997 * 109.51083 * 297.71779 * 12 11 9 30 30 H 1.08998 * 109.48980 * 177.60711 * 12 11 9 31 31 H 1.09002 * 109.46271 * 180.79158 * 13 12 11 32 32 H 1.08994 * 109.46242 * 60.81457 * 13 12 11 33 33 H 1.08000 * 118.98426 * 180.34221 * 17 16 15 34 34 H 1.08997 * 109.58483 * 168.43567 * 22 21 20 35 35 H 1.08997 * 109.58335 * 288.85959 * 22 21 20 36 36 H 1.09001 * 109.80952 * 61.64422 * 23 22 21 37 37 H 1.08994 * 109.81164 * 182.53867 * 23 22 21 38 38 H 0.97003 * 121.13986 * 345.96789 * 24 19 18 39 39 H 1.08993 * 109.46313 * 58.27251 * 25 14 13 40 40 H 1.09004 * 109.46429 * 178.24601 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6230 -2.5566 -0.8907 11 6 0.3738 -2.5840 1.2505 12 6 -0.3418 -3.9375 1.2716 13 6 0.6982 -5.0596 1.2345 14 7 1.5112 -4.9348 0.0181 15 6 2.3786 -6.0120 -0.1137 16 7 2.3624 -6.7663 -1.2118 17 6 3.1852 -7.7863 -1.3478 18 7 4.0504 -8.1172 -0.4085 19 6 4.1232 -7.4185 0.7192 20 6 3.2781 -6.3280 0.9026 21 8 3.3262 -5.5858 2.0384 22 6 3.9306 -6.1791 3.1915 23 6 5.2820 -6.7841 2.7854 24 7 5.0307 -7.7652 1.7157 25 6 2.2449 -3.6629 -0.0021 26 1 -0.4849 0.8401 0.0004 27 1 0.9973 -2.4875 2.1393 28 1 -0.3635 -1.7814 1.2337 29 1 -0.9949 -4.0177 0.4026 30 1 -0.9350 -4.0211 2.1822 31 1 0.1914 -6.0246 1.2353 32 1 1.3422 -4.9869 2.1109 33 1 3.1472 -8.3720 -2.2544 34 1 4.0863 -5.4172 3.9553 35 1 3.2817 -6.9632 3.5815 36 1 5.9429 -5.9988 2.4185 37 1 5.7371 -7.2804 3.6424 38 1 5.4819 -8.6239 1.7065 39 1 2.8817 -3.5970 0.8800 40 1 2.8616 -3.6135 -0.8996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:23 Heat of formation + Delta-G solvation = 34.505482 kcal Electronic energy + Delta-G solvation = -24086.394756 eV Core-core repulsion = 20708.913384 eV Total energy + Delta-G solvation = -3377.481372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52529 -38.81906 -38.30585 -35.69760 -33.84329 -32.58470 -31.83281 -30.16500 -29.81363 -27.80329 -25.12212 -24.92842 -24.29303 -22.30734 -21.41883 -21.19581 -19.14312 -18.24727 -17.89126 -17.50778 -16.37743 -15.84941 -15.53218 -15.24270 -14.77801 -14.52901 -14.34997 -14.11217 -13.95979 -13.45941 -13.25061 -12.62132 -12.46883 -12.36719 -11.94652 -11.75370 -11.71214 -11.04757 -10.92345 -10.78391 -10.67844 -10.64817 -10.08634 -9.80091 -9.52380 -9.27036 -9.19864 -8.98411 -8.67893 -8.27705 -7.94884 -7.79746 -5.94314 -4.00104 1.12246 1.34320 2.69676 3.16358 3.33486 3.39984 3.42667 3.82440 3.93692 4.23859 4.34031 4.48000 4.63760 4.72397 4.77293 5.06865 5.23999 5.35929 5.41528 5.46613 5.68179 5.86687 6.02284 6.14112 6.25226 6.35332 6.46715 6.51398 6.72370 6.78932 6.89795 7.06295 7.12750 7.21862 7.41419 7.46405 7.55789 7.78979 7.85065 8.11846 8.19765 8.44009 8.49908 9.03151 9.63669 11.11884 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004844 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.349717 B = 5779.415200 C = 6066.738311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.037 0.963 11 C -0.109 4.109 12 C -0.115 4.115 13 C 0.068 3.932 14 N -0.491 5.491 15 C 0.373 3.627 16 N -0.509 5.509 17 C 0.308 3.692 18 N -0.559 5.559 19 C 0.372 3.628 20 C -0.063 4.063 21 O -0.287 6.287 22 C 0.036 3.964 23 C 0.090 3.910 24 N -0.725 5.725 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.199 0.801 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.411 0.589 39 H 0.039 0.961 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.718 -15.355 7.145 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.055 0.945 11 C -0.147 4.147 12 C -0.153 4.153 13 C -0.059 4.059 14 N -0.213 5.213 15 C 0.136 3.864 16 N -0.228 5.228 17 C 0.018 3.982 18 N -0.283 5.283 19 C 0.129 3.871 20 C -0.120 4.120 21 O -0.199 6.199 22 C -0.041 4.041 23 C -0.036 4.036 24 N -0.364 5.364 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.216 0.784 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.058 0.942 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.122 -15.371 6.110 18.009 hybrid contribution 1.474 0.676 1.437 2.167 sum 8.596 -14.695 7.547 18.622 Atomic orbital electron populations 1.69896 1.05801 1.26304 1.50634 1.24911 0.94816 0.98859 0.95134 0.86627 0.79812 0.83640 0.78085 1.20710 1.21282 1.20061 1.21088 0.92804 0.90472 1.50754 0.92851 1.18686 0.92542 0.89866 0.95133 0.94505 1.21654 1.00022 0.94587 0.98483 1.21677 0.96945 0.96178 1.00508 1.22145 0.95221 0.98933 0.89564 1.58871 1.22463 1.00358 1.39586 1.19775 0.87545 0.92133 0.86969 1.68212 1.25083 1.06531 1.22938 1.24539 0.86285 0.91134 0.96292 1.67904 1.26136 1.33242 1.01027 1.18549 0.88761 0.91238 0.88555 1.21052 1.00440 0.98498 0.92053 1.86317 1.76727 1.39816 1.17016 1.23371 0.93423 0.99685 0.87589 1.22355 0.97766 0.92770 0.90664 1.44357 1.46938 1.20373 1.24738 1.22416 0.96464 0.85891 0.99631 0.93053 0.94870 0.88948 0.91872 0.93087 0.92832 0.93124 0.78414 0.86171 0.91497 0.90492 0.88162 0.75135 0.94244 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 11.36 55.43 0.63 -24.66 16 2 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.24 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 11 C -0.11 -2.58 5.03 -26.60 -0.13 -2.72 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C 0.07 1.28 4.99 -3.84 -0.02 1.26 16 14 N -0.49 -10.13 4.69 -172.96 -0.81 -10.94 16 15 C 0.37 7.07 5.74 -154.30 -0.89 6.18 16 16 N -0.51 -9.20 10.46 -13.71 -0.14 -9.34 16 17 C 0.31 4.53 12.28 -92.08 -1.13 3.40 16 18 N -0.56 -8.26 10.48 -13.77 -0.14 -8.41 16 19 C 0.37 5.48 7.57 -154.45 -1.17 4.31 16 20 C -0.06 -1.05 6.06 -38.82 -0.24 -1.28 16 21 O -0.29 -4.46 6.38 -19.02 -0.12 -4.58 16 22 C 0.04 0.36 7.20 37.43 0.27 0.63 16 23 C 0.09 0.74 7.34 -3.32 -0.02 0.72 16 24 N -0.73 -7.73 5.94 -59.41 -0.35 -8.08 16 25 C 0.08 1.83 4.37 -3.83 -0.02 1.81 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.05 0.93 5.86 -51.93 -0.30 0.63 16 33 H 0.20 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.41 3.54 8.96 -40.82 -0.37 3.17 16 39 H 0.04 0.90 6.75 -51.93 -0.35 0.54 16 40 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -31.90 316.14 -10.83 -42.73 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.53 Total: 1.89 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -4.10 Total: 0.36 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.82 Total: -61.43 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.12 Total: -4.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.90 -10.83 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.238 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds