Wall clock time and date at job start Fri Apr 10 2020 19:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00083 * 2 1 4 4 H 1.48498 * 109.47027 * 270.00413 * 3 2 1 5 5 H 1.48501 * 109.47139 * 30.00207 * 3 2 1 6 6 H 1.48494 * 109.47023 * 150.00036 * 3 2 1 7 7 C 1.37880 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99933 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53976 * 59.89733 * 9 7 2 11 11 C 1.53127 * 109.50186 * 299.79966 * 9 7 2 12 12 C 1.53123 * 109.15019 * 182.40207 * 11 9 7 13 13 C 1.53034 * 109.27992 * 57.67185 * 12 11 9 14 14 N 1.46847 * 109.51345 * 300.80438 * 13 12 11 15 15 C 1.38925 * 110.99972 * 185.84724 * 14 13 12 16 16 N 1.33229 * 120.63855 * 123.66946 * 15 14 13 17 17 C 1.31752 * 121.05154 * 179.71035 * 16 15 14 18 18 N 1.31919 * 122.02520 * 0.60112 * 17 16 15 19 19 C 1.32871 * 120.55388 * 359.75999 * 18 17 16 20 20 C 1.39170 * 119.37963 * 359.87462 * 19 18 17 21 21 O 1.35771 * 121.13698 * 180.28245 * 20 19 18 22 22 C 1.43074 * 117.54758 * 340.28769 * 21 20 19 23 23 C 1.53529 * 108.78831 * 48.64982 * 22 21 20 24 24 N 1.39163 * 120.82671 * 179.78315 * 19 18 17 25 25 C 1.46843 * 111.20124 * 61.74903 * 14 13 12 26 26 H 0.97000 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.52393 * 302.31016 * 11 9 7 28 28 H 1.08997 * 109.52177 * 62.44105 * 11 9 7 29 29 H 1.08997 * 109.51083 * 297.71779 * 12 11 9 30 30 H 1.08998 * 109.48980 * 177.60711 * 12 11 9 31 31 H 1.09002 * 109.46271 * 180.79158 * 13 12 11 32 32 H 1.08994 * 109.46242 * 60.81457 * 13 12 11 33 33 H 1.08000 * 118.98426 * 180.34221 * 17 16 15 34 34 H 1.08997 * 109.58483 * 168.43567 * 22 21 20 35 35 H 1.08997 * 109.58335 * 288.85959 * 22 21 20 36 36 H 1.09001 * 109.80952 * 61.64422 * 23 22 21 37 37 H 1.08994 * 109.81164 * 182.53867 * 23 22 21 38 38 H 0.97003 * 121.13986 * 345.96789 * 24 19 18 39 39 H 1.08993 * 109.46313 * 58.27251 * 25 14 13 40 40 H 1.09004 * 109.46429 * 178.24601 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6230 -2.5566 -0.8907 11 6 0.3738 -2.5840 1.2505 12 6 -0.3418 -3.9375 1.2716 13 6 0.6982 -5.0596 1.2345 14 7 1.5112 -4.9348 0.0181 15 6 2.3786 -6.0120 -0.1137 16 7 2.3624 -6.7663 -1.2118 17 6 3.1852 -7.7863 -1.3478 18 7 4.0504 -8.1172 -0.4085 19 6 4.1232 -7.4185 0.7192 20 6 3.2781 -6.3280 0.9026 21 8 3.3262 -5.5858 2.0384 22 6 3.9306 -6.1791 3.1915 23 6 5.2820 -6.7841 2.7854 24 7 5.0307 -7.7652 1.7157 25 6 2.2449 -3.6629 -0.0021 26 1 -0.4849 0.8401 0.0004 27 1 0.9973 -2.4875 2.1393 28 1 -0.3635 -1.7814 1.2337 29 1 -0.9949 -4.0177 0.4026 30 1 -0.9350 -4.0211 2.1822 31 1 0.1914 -6.0246 1.2353 32 1 1.3422 -4.9869 2.1109 33 1 3.1472 -8.3720 -2.2544 34 1 4.0863 -5.4172 3.9553 35 1 3.2817 -6.9632 3.5815 36 1 5.9429 -5.9988 2.4185 37 1 5.7371 -7.2804 3.6424 38 1 5.4819 -8.6239 1.7065 39 1 2.8817 -3.5970 0.8800 40 1 2.8616 -3.6135 -0.8996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596326574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:23 Heat of formation + Delta-G solvation = 13.280277 kcal Electronic energy + Delta-G solvation = -24087.315150 eV Core-core repulsion = 20708.913384 eV Total energy + Delta-G solvation = -3378.401766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68725 -39.95892 -39.78203 -36.89774 -35.49523 -34.03592 -33.20874 -31.77246 -31.36986 -28.81278 -26.96084 -26.12695 -25.74994 -23.67861 -23.18496 -22.23828 -20.70939 -19.54089 -19.17159 -18.71803 -18.08538 -17.13628 -16.77737 -16.61053 -16.22549 -15.92849 -15.54896 -15.31528 -15.12110 -14.94698 -14.46931 -14.36089 -14.26861 -14.04972 -13.41781 -12.91897 -12.85696 -12.73856 -12.59710 -12.56423 -12.05269 -11.91889 -11.86426 -11.63909 -11.41861 -11.03729 -10.71647 -10.50529 -10.36614 -10.16035 -9.31736 -9.01151 -8.06337 -6.20550 -0.11060 0.17279 1.43054 1.43882 1.53952 1.79864 2.17429 2.38305 2.52822 2.75154 3.18177 3.20794 3.45134 3.73612 3.83885 4.02153 4.07089 4.16782 4.24073 4.29450 4.45270 4.56619 4.59520 4.67866 4.73759 4.88871 4.90511 5.02943 5.07700 5.15712 5.33971 5.36832 5.49654 5.64728 5.82229 5.89558 6.05780 6.14331 6.17337 6.37649 6.41523 6.59039 6.89342 7.24657 7.46805 8.98801 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004844 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.349717 B = 5779.415200 C = 6066.738311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.056 3.944 10 H -0.005 1.005 11 C -0.099 4.099 12 C -0.107 4.107 13 C 0.076 3.924 14 N -0.505 5.505 15 C 0.338 3.662 16 N -0.540 5.540 17 C 0.309 3.691 18 N -0.559 5.559 19 C 0.373 3.627 20 C -0.065 4.065 21 O -0.313 6.313 22 C 0.025 3.975 23 C 0.090 3.910 24 N -0.710 5.710 25 C 0.104 3.896 26 H 0.261 0.739 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.235 0.765 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.424 0.576 39 H 0.037 0.963 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 -16.750 8.871 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.037 3.963 10 H 0.013 0.987 11 C -0.137 4.137 12 C -0.145 4.145 13 C -0.051 4.051 14 N -0.227 5.227 15 C 0.103 3.897 16 N -0.260 5.260 17 C 0.019 3.981 18 N -0.284 5.284 19 C 0.127 3.873 20 C -0.123 4.123 21 O -0.225 6.225 22 C -0.051 4.051 23 C -0.034 4.034 24 N -0.349 5.349 25 C -0.022 4.022 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.166 0.834 38 H 0.263 0.737 39 H 0.056 0.944 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.904 -16.793 7.870 20.572 hybrid contribution 1.006 1.025 0.953 1.724 sum 9.910 -15.768 8.823 20.608 Atomic orbital electron populations 1.70035 1.07123 1.27165 1.50927 1.25684 0.95661 1.02180 0.94608 0.85605 0.78775 0.79398 0.78151 1.20407 1.20546 1.19259 1.21398 0.92824 0.91887 1.51262 0.93273 1.18586 0.92777 0.90700 0.94219 0.98675 1.21424 0.99061 0.95954 0.97247 1.21587 0.97070 0.94456 1.01384 1.22083 0.94732 0.98892 0.89345 1.58659 1.23261 1.00146 1.40652 1.19671 0.88997 0.92513 0.88552 1.68150 1.26726 1.07802 1.23353 1.25236 0.85206 0.90326 0.97297 1.68050 1.26084 1.33144 1.01133 1.18784 0.88917 0.90392 0.89221 1.20825 1.00339 0.98965 0.92132 1.86249 1.77538 1.40894 1.17850 1.23788 0.94190 1.00879 0.86195 1.22598 0.96804 0.92658 0.91337 1.44538 1.45293 1.21221 1.23851 1.21934 0.95310 0.86512 0.98452 0.92937 0.95033 0.91845 0.93220 0.90107 0.91251 0.92410 0.74957 0.83853 0.90520 0.90956 0.83400 0.73667 0.94450 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.50 11.36 21.45 0.24 -53.26 16 2 C 0.02 1.00 5.31 84.65 0.45 1.45 16 3 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.06 3.00 2.26 -11.49 -0.03 2.97 16 10 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 11 C -0.10 -4.81 5.03 30.68 0.15 -4.65 16 12 C -0.11 -4.28 6.09 30.65 0.19 -4.10 16 13 C 0.08 2.83 4.99 86.32 0.43 3.26 16 14 N -0.50 -21.33 4.69 -701.11 -3.29 -24.62 16 15 C 0.34 12.89 5.74 132.89 0.76 13.65 16 16 N -0.54 -19.59 10.46 -197.27 -2.06 -21.65 16 17 C 0.31 8.75 12.28 180.86 2.22 10.97 16 18 N -0.56 -15.51 10.48 -197.48 -2.07 -17.59 16 19 C 0.37 10.25 7.57 132.88 1.01 11.25 16 20 C -0.06 -2.10 6.06 22.76 0.14 -1.96 16 21 O -0.31 -9.31 6.38 -90.98 -0.58 -9.89 16 22 C 0.02 0.43 7.20 72.16 0.52 0.95 16 23 C 0.09 1.15 7.34 86.40 0.63 1.78 16 24 N -0.71 -12.82 5.94 -341.88 -2.03 -14.85 16 25 C 0.10 4.89 4.37 86.33 0.38 5.27 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 3.45 6.16 -2.39 -0.01 3.44 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 32 H 0.06 2.08 5.86 -2.39 -0.01 2.07 16 33 H 0.23 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.42 5.71 8.96 -92.71 -0.83 4.88 16 39 H 0.04 1.75 6.75 -2.39 -0.02 1.73 16 40 H 0.04 1.87 8.10 -2.38 -0.02 1.85 16 Total: -1.00 -72.07 316.14 -0.46 -72.53 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.23 Total: 12.60 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.07 Total: 10.56 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -9.21 Total: -131.97 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.58 Total: -9.89 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.07 -0.46 -72.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.806 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds