Wall clock time and date at job start Fri Apr 10 2020 19:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00382 * 2 1 4 4 C 1.52999 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47127 * 65.00109 * 4 3 2 6 6 C 1.37099 * 119.99649 * 89.99892 * 5 4 3 7 7 H 1.07997 * 120.00378 * 308.87086 * 6 5 4 8 8 C 1.38950 * 120.00012 * 128.87931 * 6 5 4 9 9 N 1.31412 * 120.00104 * 170.94676 * 8 6 5 10 10 Si 1.86806 * 119.99626 * 350.94743 * 8 6 5 11 11 H 1.48493 * 109.47075 * 269.18249 * 10 8 6 12 12 H 1.48494 * 109.47301 * 29.18742 * 10 8 6 13 13 H 1.48507 * 109.46747 * 149.18569 * 10 8 6 14 14 C 1.34767 * 119.99991 * 269.99908 * 5 4 3 15 15 O 1.21300 * 119.99908 * 353.95035 * 14 5 4 16 16 C 1.50701 * 120.00367 * 173.95260 * 14 5 4 17 17 H 1.09006 * 110.25719 * 51.55450 * 16 14 5 18 18 C 1.54335 * 110.29905 * 173.71470 * 16 14 5 19 19 C 1.54369 * 102.38643 * 145.27972 * 18 16 14 20 20 C 1.51215 * 105.12405 * 333.71132 * 19 18 16 21 21 C 1.38742 * 130.69699 * 197.14937 * 20 19 18 22 22 C 1.38579 * 118.55528 * 179.97438 * 21 20 19 23 23 C 1.38224 * 118.99404 * 359.97438 * 22 21 20 24 24 N 1.31691 * 120.80028 * 0.02562 * 23 22 21 25 25 C 1.32298 * 122.02624 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46786 * 300.00369 * 1 2 3 28 28 H 1.08997 * 109.46806 * 59.99647 * 1 2 3 29 29 H 1.08995 * 109.47232 * 60.00215 * 3 2 1 30 30 H 1.09000 * 109.47020 * 300.00265 * 3 2 1 31 31 H 1.08992 * 109.47366 * 304.99769 * 4 3 2 32 32 H 1.09009 * 109.46974 * 184.99943 * 4 3 2 33 33 H 0.97003 * 119.99647 * 179.97438 * 9 8 6 34 34 H 1.09002 * 110.82157 * 263.50378 * 18 16 14 35 35 H 1.09002 * 110.82379 * 27.05833 * 18 16 14 36 36 H 1.09004 * 110.30869 * 214.79630 * 19 18 16 37 37 H 1.08997 * 110.39667 * 92.66930 * 19 18 16 38 38 H 1.07997 * 120.72321 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.50522 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.60161 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2528 6 6 4.2664 1.3469 -2.3402 7 1 3.5567 2.0876 -2.6778 8 6 5.4743 1.1871 -3.0082 9 7 5.6811 1.8055 -4.1492 10 14 6.8043 0.0931 -2.2843 11 1 7.6956 0.9050 -1.4175 12 1 6.1751 -0.9831 -1.4773 13 1 7.5994 -0.5124 -3.3828 14 6 4.0948 -0.7756 -1.3356 15 8 3.9445 -1.4602 -0.3456 16 6 4.4146 -1.4234 -2.6582 17 1 5.2903 -0.9538 -3.1064 18 6 4.6536 -2.9364 -2.4694 19 6 4.0784 -3.5278 -3.7742 20 6 3.0374 -2.5318 -4.2335 21 6 1.9974 -2.6644 -5.1422 22 6 1.1799 -1.5704 -5.3776 23 6 1.4280 -0.3908 -4.7013 24 7 2.4247 -0.3011 -3.8453 25 6 3.2277 -1.3220 -3.5939 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6888 1.8463 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8515 0.5681 0.8409 32 1 3.9787 2.1764 0.0889 33 1 6.5245 1.6941 -4.6152 34 1 5.7184 -3.1526 -2.3823 35 1 4.1091 -3.3094 -1.6019 36 1 3.6163 -4.4956 -3.5794 37 1 4.8630 -3.6280 -4.5241 38 1 1.8286 -3.5998 -5.6549 39 1 0.3609 -1.6388 -6.0783 40 1 0.7968 0.4678 -4.8769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:50 Heat of formation + Delta-G solvation = -8.572212 kcal Electronic energy + Delta-G solvation = -24945.298696 eV Core-core repulsion = 21533.656584 eV Total energy + Delta-G solvation = -3411.642112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44296 -38.64472 -37.09801 -35.46488 -34.51115 -32.27160 -31.82422 -29.56039 -28.77414 -27.54518 -25.79010 -24.37408 -22.95341 -22.62165 -21.34492 -20.53781 -18.96399 -17.47511 -16.67355 -15.81686 -15.78481 -15.60795 -15.17439 -14.89299 -14.65825 -14.27222 -14.15870 -13.41614 -13.20748 -13.07808 -12.88286 -12.54635 -12.28593 -12.08247 -12.01564 -11.62284 -11.32303 -11.21846 -10.98153 -10.91809 -10.85726 -10.43390 -10.39108 -10.20966 -9.68794 -9.18875 -9.06848 -8.94721 -8.65413 -8.32714 -8.03137 -7.42122 -6.26263 -3.98166 1.65481 1.87971 3.06903 3.20479 3.32177 3.90331 4.18752 4.34670 4.44920 4.59892 4.63647 4.97396 5.10534 5.22896 5.35832 5.40425 5.53885 5.59833 5.69147 5.70526 5.77746 5.89343 5.94881 5.99097 6.01925 6.05297 6.08817 6.21363 6.27257 6.31945 6.41861 6.47899 6.60785 6.70512 6.73605 6.75171 7.27186 7.76867 7.90037 7.94901 8.69953 8.81056 9.15123 9.45450 9.89723 10.83654 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.010759 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.383567 B = 2601.818170 C = 3578.330133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.052 3.948 4 C 0.115 3.885 5 N -0.466 5.466 6 C -0.301 4.301 7 H 0.099 0.901 8 C 0.062 3.938 9 N -0.870 5.870 10 Si 0.842 3.158 11 H -0.281 1.281 12 H -0.245 1.245 13 H -0.279 1.279 14 C 0.518 3.482 15 O -0.579 6.579 16 C -0.052 4.052 17 H 0.101 0.899 18 C -0.111 4.111 19 C -0.075 4.075 20 C -0.162 4.162 21 C -0.074 4.074 22 C -0.188 4.188 23 C 0.097 3.903 24 N -0.417 5.417 25 C 0.169 3.831 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.269 0.731 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 -5.851 -0.159 9.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.188 5.188 6 C -0.430 4.430 7 H 0.116 0.884 8 C -0.142 4.142 9 N -0.507 5.507 10 Si 0.669 3.331 11 H -0.208 1.208 12 H -0.170 1.170 13 H -0.205 1.205 14 C 0.306 3.694 15 O -0.462 6.462 16 C -0.073 4.073 17 H 0.118 0.882 18 C -0.149 4.149 19 C -0.112 4.112 20 C -0.164 4.164 21 C -0.100 4.100 22 C -0.208 4.208 23 C -0.061 4.061 24 N -0.124 5.124 25 C 0.031 3.969 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.601 -5.477 0.613 8.599 hybrid contribution 0.424 -0.758 -0.621 1.067 sum -6.176 -6.235 -0.008 8.776 Atomic orbital electron populations 1.22597 0.83055 1.01645 0.98883 1.88111 1.17737 1.27568 1.95079 1.22966 0.95670 0.84780 0.99155 1.21448 0.91360 0.98788 0.89295 1.43402 1.61088 1.03741 1.10526 1.18834 1.01269 1.18577 1.04291 0.88391 1.25579 0.96884 0.96133 0.95559 1.69647 1.25022 1.42187 1.13891 0.87672 0.82865 0.82406 0.80129 1.20781 1.16965 1.20466 1.19735 0.78017 0.82982 0.88629 1.90514 1.54933 1.63153 1.37643 1.21016 0.95731 0.96321 0.94214 0.88196 1.22352 1.01619 0.92907 0.98057 1.20941 0.95950 0.97076 0.97275 1.21471 0.97859 0.98098 0.99020 1.20838 0.93878 0.98702 0.96574 1.21966 1.01357 0.94875 1.02592 1.22706 0.94449 0.96538 0.92429 1.67145 1.01637 1.30332 1.13244 1.21202 0.93716 0.88100 0.93903 0.90688 0.95137 0.94765 0.94232 0.92925 0.91022 0.89600 0.91998 0.90694 0.88663 0.90661 0.90392 0.85874 0.85533 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.65 9.75 -35.60 -0.35 -8.00 16 3 C 0.05 1.00 6.28 37.16 0.23 1.23 16 4 C 0.11 2.44 5.86 -4.04 -0.02 2.41 16 5 N -0.47 -11.47 2.04 -114.81 -0.23 -11.71 16 6 C -0.30 -7.92 7.61 -14.93 -0.11 -8.03 16 7 H 0.10 2.79 8.06 -52.49 -0.42 2.37 16 8 C 0.06 1.68 4.60 -17.47 -0.08 1.60 16 9 N -0.87 -24.47 13.96 55.50 0.77 -23.70 16 10 Si 0.84 20.58 24.43 -169.99 -4.15 16.43 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.24 -5.98 4.21 56.52 0.24 -5.75 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.52 13.01 3.87 -10.99 -0.04 12.96 16 15 O -0.58 -15.38 14.56 5.17 0.08 -15.31 16 16 C -0.05 -1.20 1.27 -91.84 -0.12 -1.31 16 17 H 0.10 2.46 2.58 -51.93 -0.13 2.33 16 18 C -0.11 -2.15 6.16 -25.31 -0.16 -2.31 16 19 C -0.07 -1.22 6.77 -26.91 -0.18 -1.40 16 20 C -0.16 -3.03 6.16 -104.21 -0.64 -3.67 16 21 C -0.07 -1.17 10.17 -39.27 -0.40 -1.57 16 22 C -0.19 -2.89 10.12 -39.46 -0.40 -3.29 16 23 C 0.10 1.78 11.18 -17.62 -0.20 1.58 16 24 N -0.42 -9.43 8.82 -9.19 -0.08 -9.51 16 25 C 0.17 3.79 6.34 -82.03 -0.52 3.27 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16 32 H 0.09 1.65 8.04 -51.92 -0.42 1.23 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.92 6.94 -51.93 -0.36 1.56 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 40 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -32.65 319.95 -6.33 -38.98 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.67 Total: 4.85 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.53 Total: 3.14 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.46 Total: -44.92 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.27 Total: -23.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.15 Total: 16.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.65 -6.33 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.409 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds