Wall clock time and date at job start Fri Apr 10 2020 19:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00382 * 2 1 4 4 C 1.52999 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47127 * 65.00109 * 4 3 2 6 6 C 1.37099 * 119.99649 * 89.99892 * 5 4 3 7 7 H 1.07997 * 120.00378 * 308.87086 * 6 5 4 8 8 C 1.38950 * 120.00012 * 128.87931 * 6 5 4 9 9 N 1.31412 * 120.00104 * 170.94676 * 8 6 5 10 10 Si 1.86806 * 119.99626 * 350.94743 * 8 6 5 11 11 H 1.48493 * 109.47075 * 269.18249 * 10 8 6 12 12 H 1.48494 * 109.47301 * 29.18742 * 10 8 6 13 13 H 1.48507 * 109.46747 * 149.18569 * 10 8 6 14 14 C 1.34767 * 119.99991 * 269.99908 * 5 4 3 15 15 O 1.21300 * 119.99908 * 353.95035 * 14 5 4 16 16 C 1.50701 * 120.00367 * 173.95260 * 14 5 4 17 17 H 1.09006 * 110.25719 * 51.55450 * 16 14 5 18 18 C 1.54335 * 110.29905 * 173.71470 * 16 14 5 19 19 C 1.54369 * 102.38643 * 145.27972 * 18 16 14 20 20 C 1.51215 * 105.12405 * 333.71132 * 19 18 16 21 21 C 1.38742 * 130.69699 * 197.14937 * 20 19 18 22 22 C 1.38579 * 118.55528 * 179.97438 * 21 20 19 23 23 C 1.38224 * 118.99404 * 359.97438 * 22 21 20 24 24 N 1.31691 * 120.80028 * 0.02562 * 23 22 21 25 25 C 1.32298 * 122.02624 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46786 * 300.00369 * 1 2 3 28 28 H 1.08997 * 109.46806 * 59.99647 * 1 2 3 29 29 H 1.08995 * 109.47232 * 60.00215 * 3 2 1 30 30 H 1.09000 * 109.47020 * 300.00265 * 3 2 1 31 31 H 1.08992 * 109.47366 * 304.99769 * 4 3 2 32 32 H 1.09009 * 109.46974 * 184.99943 * 4 3 2 33 33 H 0.97003 * 119.99647 * 179.97438 * 9 8 6 34 34 H 1.09002 * 110.82157 * 263.50378 * 18 16 14 35 35 H 1.09002 * 110.82379 * 27.05833 * 18 16 14 36 36 H 1.09004 * 110.30869 * 214.79630 * 19 18 16 37 37 H 1.08997 * 110.39667 * 92.66930 * 19 18 16 38 38 H 1.07997 * 120.72321 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.50522 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.60161 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2528 6 6 4.2664 1.3469 -2.3402 7 1 3.5567 2.0876 -2.6778 8 6 5.4743 1.1871 -3.0082 9 7 5.6811 1.8055 -4.1492 10 14 6.8043 0.0931 -2.2843 11 1 7.6956 0.9050 -1.4175 12 1 6.1751 -0.9831 -1.4773 13 1 7.5994 -0.5124 -3.3828 14 6 4.0948 -0.7756 -1.3356 15 8 3.9445 -1.4602 -0.3456 16 6 4.4146 -1.4234 -2.6582 17 1 5.2903 -0.9538 -3.1064 18 6 4.6536 -2.9364 -2.4694 19 6 4.0784 -3.5278 -3.7742 20 6 3.0374 -2.5318 -4.2335 21 6 1.9974 -2.6644 -5.1422 22 6 1.1799 -1.5704 -5.3776 23 6 1.4280 -0.3908 -4.7013 24 7 2.4247 -0.3011 -3.8453 25 6 3.2277 -1.3220 -3.5939 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6888 1.8463 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8515 0.5681 0.8409 32 1 3.9787 2.1764 0.0889 33 1 6.5245 1.6941 -4.6152 34 1 5.7184 -3.1526 -2.3823 35 1 4.1091 -3.3094 -1.6019 36 1 3.6163 -4.4956 -3.5794 37 1 4.8630 -3.6280 -4.5241 38 1 1.8286 -3.5998 -5.6549 39 1 0.3609 -1.6388 -6.0783 40 1 0.7968 0.4678 -4.8769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:49 Heat of formation + Delta-G solvation = -30.843622 kcal Electronic energy + Delta-G solvation = -24946.264457 eV Core-core repulsion = 21533.656584 eV Total energy + Delta-G solvation = -3412.607873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.97886 -40.35300 -38.63399 -36.97739 -36.43402 -34.07883 -33.39478 -31.22823 -30.18615 -29.02731 -27.20152 -26.36596 -24.33783 -24.21569 -22.81443 -22.05547 -20.80561 -19.32740 -18.30227 -17.38203 -17.26267 -17.19619 -16.84840 -16.45841 -16.19364 -15.86302 -15.72987 -15.16432 -14.84596 -14.72789 -14.32975 -14.20490 -13.89762 -13.63935 -13.45337 -13.14338 -12.81368 -12.73420 -12.65813 -12.48209 -12.42660 -12.33221 -11.95764 -11.91330 -11.53472 -11.00040 -10.65671 -10.50030 -10.40040 -9.79880 -9.50103 -9.38954 -8.35011 -6.08023 0.26978 0.57703 1.11696 1.24378 1.32557 2.00921 2.18568 2.69584 2.96793 3.06191 3.10147 3.22879 3.56693 3.86179 4.03990 4.07837 4.18283 4.24726 4.28255 4.34149 4.41849 4.50504 4.53091 4.53908 4.56209 4.63272 4.72137 4.74963 4.79679 4.90605 4.98789 5.04562 5.07923 5.23135 5.31488 5.41387 5.84560 5.95322 5.96193 6.38254 6.58081 7.09086 7.40044 7.47144 7.93012 8.77952 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.010759 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.383567 B = 2601.818170 C = 3578.330133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.105 3.895 5 N -0.474 5.474 6 C -0.282 4.282 7 H 0.066 0.934 8 C 0.032 3.968 9 N -0.905 5.905 10 Si 0.893 3.107 11 H -0.286 1.286 12 H -0.249 1.249 13 H -0.268 1.268 14 C 0.513 3.487 15 O -0.602 6.602 16 C -0.061 4.061 17 H 0.080 0.920 18 C -0.111 4.111 19 C -0.065 4.065 20 C -0.166 4.166 21 C -0.070 4.070 22 C -0.167 4.167 23 C 0.071 3.929 24 N -0.466 5.466 25 C 0.120 3.880 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 -7.868 -0.967 11.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.323 6.323 3 C -0.017 4.017 4 C -0.018 4.018 5 N -0.195 5.195 6 C -0.411 4.411 7 H 0.084 0.916 8 C -0.169 4.169 9 N -0.545 5.545 10 Si 0.719 3.281 11 H -0.213 1.213 12 H -0.174 1.174 13 H -0.193 1.193 14 C 0.302 3.698 15 O -0.486 6.486 16 C -0.083 4.083 17 H 0.097 0.903 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.168 4.168 21 C -0.096 4.096 22 C -0.186 4.186 23 C -0.087 4.087 24 N -0.173 5.173 25 C -0.018 4.018 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.187 0.813 39 H 0.190 0.810 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.803 -7.489 -0.187 10.817 hybrid contribution 0.611 -0.094 -0.378 0.724 sum -7.193 -7.583 -0.565 10.467 Atomic orbital electron populations 1.22769 0.80694 1.02671 1.00245 1.88051 1.20469 1.28413 1.95364 1.22853 0.93986 0.84625 1.00209 1.21680 0.93295 0.99173 0.87668 1.43526 1.61112 1.03846 1.11011 1.18435 1.00374 1.17545 1.04774 0.91604 1.25936 0.98318 0.97064 0.95570 1.69735 1.25629 1.44062 1.15033 0.86882 0.80671 0.80996 0.79577 1.21332 1.17352 1.19340 1.20185 0.77311 0.82961 0.89310 1.90475 1.56034 1.63493 1.38632 1.21073 0.95851 0.98204 0.93155 0.90307 1.22377 1.02449 0.90663 0.99469 1.20974 0.95948 0.97596 0.95737 1.21825 0.98923 0.97081 0.99006 1.21375 0.92259 1.00523 0.95423 1.22418 1.01585 0.93248 1.01373 1.23120 0.94158 0.98698 0.92685 1.66947 1.03270 1.31842 1.15286 1.21224 0.94646 0.89961 0.95933 0.89914 0.92367 0.94665 0.90436 0.94336 0.91570 0.88126 0.91904 0.89544 0.90050 0.87303 0.88419 0.81314 0.81016 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.01 113.37 1.25 2.25 16 2 O -0.40 -16.84 9.75 -148.63 -1.45 -18.29 16 3 C 0.06 2.32 6.28 71.98 0.45 2.77 16 4 C 0.10 4.52 5.86 86.38 0.51 5.03 16 5 N -0.47 -23.94 2.04 -635.53 -1.30 -25.24 16 6 C -0.28 -15.40 7.61 84.04 0.64 -14.77 16 7 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 8 C 0.03 1.78 4.60 84.93 0.39 2.17 16 9 N -0.91 -52.38 13.96 21.66 0.30 -52.07 16 10 Si 0.89 43.58 24.43 68.60 1.68 45.26 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.25 -12.21 4.21 99.48 0.42 -11.79 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.51 26.26 3.87 87.66 0.34 26.59 16 15 O -0.60 -32.53 14.56 -2.74 -0.04 -32.57 16 16 C -0.06 -2.88 1.27 -11.58 -0.01 -2.89 16 17 H 0.08 3.94 2.58 -2.38 -0.01 3.93 16 18 C -0.11 -4.21 6.16 31.51 0.19 -4.02 16 19 C -0.07 -1.93 6.77 30.48 0.21 -1.73 16 20 C -0.17 -5.83 6.16 -19.60 -0.12 -5.95 16 21 C -0.07 -1.93 10.17 22.47 0.23 -1.70 16 22 C -0.17 -4.56 10.12 22.35 0.23 -4.33 16 23 C 0.07 2.56 11.18 84.71 0.95 3.51 16 24 N -0.47 -21.40 8.82 -182.98 -1.61 -23.02 16 25 C 0.12 5.37 6.34 42.72 0.27 5.64 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.91 7.35 -2.39 -0.02 2.89 16 32 H 0.10 3.92 8.04 -2.38 -0.02 3.90 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.08 3.26 6.94 -2.39 -0.02 3.25 16 36 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -74.38 319.95 3.84 -70.54 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.75 Total: 22.81 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.51 Total: 12.57 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -2.61 Total: -100.33 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.49 Total: -50.86 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.68 Total: 45.26 kcal Total: -74.38 3.84 -70.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.698 kcal (2) G-P(sol) polarization free energy of solvation -74.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds