Wall clock time and date at job start Fri Apr 10 2020 19:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35743 * 117.00409 * 2 1 4 4 C 1.39209 * 120.80920 * 359.97438 * 3 2 1 5 5 C 1.38313 * 119.28851 * 180.02562 * 4 3 2 6 6 N 1.31618 * 120.97099 * 0.02562 * 5 4 3 7 7 C 1.32800 * 121.77714 * 359.97438 * 6 5 4 8 8 C 1.48183 * 119.69199 * 180.02562 * 7 6 5 9 9 O 1.21515 * 119.99807 * 202.50873 * 8 7 6 10 10 N 1.34775 * 120.00305 * 22.51112 * 8 7 6 11 11 C 1.46925 * 120.63069 * 359.72989 * 10 8 7 12 12 C 1.53197 * 108.89231 * 126.34148 * 11 10 8 13 13 C 1.53345 * 109.14970 * 54.58068 * 12 11 10 14 14 C 1.53047 * 109.60632 * 298.71064 * 13 12 11 15 15 H 1.09000 * 109.49515 * 301.42088 * 14 13 12 16 16 C 1.50698 * 109.49709 * 181.32672 * 14 13 12 17 17 H 1.07994 * 120.00006 * 0.16132 * 16 14 13 18 18 C 1.37878 * 119.99705 * 180.16171 * 16 14 13 19 19 N 1.31510 * 120.00447 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99846 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46816 * 119.99863 * 20 18 16 23 23 H 1.48495 * 109.47447 * 240.00213 * 20 18 16 24 24 C 1.46923 * 120.63208 * 179.74982 * 10 8 7 25 25 C 1.39098 * 120.60771 * 0.27257 * 7 6 5 26 26 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47654 * 300.00077 * 1 2 3 28 28 H 1.09000 * 109.47016 * 60.00730 * 1 2 3 29 29 H 1.08004 * 120.35966 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.51788 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.58964 * 246.20017 * 11 10 8 32 32 H 1.09001 * 109.58538 * 6.48622 * 11 10 8 33 33 H 1.08999 * 109.49395 * 174.66074 * 12 11 10 34 34 H 1.09000 * 109.49614 * 294.75133 * 12 11 10 35 35 H 1.09000 * 109.41940 * 178.67578 * 13 12 11 36 36 H 1.08998 * 109.42581 * 58.74700 * 13 12 11 37 37 H 0.97000 * 120.00467 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.58912 * 353.37796 * 24 10 8 39 39 H 1.09005 * 109.58449 * 113.80006 * 24 10 8 40 40 H 1.07995 * 120.50971 * 179.72042 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3038 2.3876 -0.0005 5 6 1.9642 3.6028 -0.0011 6 7 3.2792 3.6590 -0.0016 7 6 4.0261 2.5609 -0.0011 8 6 5.5033 2.6780 -0.0011 9 8 6.1858 1.7567 -0.4036 10 7 6.0900 3.8063 0.4453 11 6 5.2781 4.9310 0.9295 12 6 5.7499 5.3141 2.3358 13 6 7.2575 5.5920 2.3023 14 6 8.0031 4.3282 1.8672 15 1 7.7790 3.5170 2.5598 16 6 9.4864 4.5944 1.8665 17 1 9.8606 5.5668 2.1507 18 6 10.3657 3.5965 1.5030 19 7 9.9101 2.4123 1.1575 20 14 12.2043 3.9267 1.5015 21 1 12.4561 5.3270 1.9272 22 1 12.8752 2.9952 2.4435 23 1 12.7432 3.7203 0.1333 24 6 7.5535 3.9351 0.4565 25 6 3.4346 1.3020 -0.0057 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 0.2243 2.3532 -0.0014 30 1 1.3926 4.5191 -0.0019 31 1 5.3969 5.7826 0.2597 32 1 4.2292 4.6365 0.9636 33 1 5.2192 6.2068 2.6669 34 1 5.5467 4.4934 3.0238 35 1 7.5937 5.8879 3.2960 36 1 7.4624 6.3959 1.5953 37 1 10.5286 1.7104 0.9014 38 1 8.0063 2.9827 0.1808 39 1 7.8579 4.7055 -0.2520 40 1 4.0435 0.4101 -0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:52 Heat of formation + Delta-G solvation = -22.839291 kcal Electronic energy + Delta-G solvation = -23248.792764 eV Core-core repulsion = 19836.531985 eV Total energy + Delta-G solvation = -3412.260779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95565 -39.36297 -38.04008 -36.60112 -33.37611 -31.94109 -31.66523 -31.23660 -29.56877 -27.94358 -25.45090 -24.87353 -23.52525 -23.01454 -21.67806 -20.29443 -18.91436 -17.75052 -17.35881 -16.39463 -16.22025 -16.10768 -15.48854 -15.35609 -14.79791 -14.63989 -14.21197 -14.02920 -13.65833 -13.34410 -13.21193 -12.76295 -12.59121 -12.44531 -12.04105 -11.90506 -11.73592 -11.56637 -10.96299 -10.89233 -10.46069 -10.34980 -10.18965 -9.86394 -9.62927 -9.36532 -9.18966 -9.06961 -9.01139 -8.56148 -8.37937 -7.65092 -5.94995 -4.03624 0.68029 1.14915 2.76868 3.10479 3.33435 3.41711 3.44978 3.69143 3.90729 4.31020 4.42408 4.47430 4.63397 4.76722 4.77005 4.99384 5.09731 5.12847 5.35090 5.52322 5.62538 5.72135 5.75524 5.87354 5.99620 6.14457 6.32440 6.43759 6.61371 6.76390 6.80028 6.94675 6.96354 7.06176 7.22414 7.37342 7.68183 7.73395 7.93243 8.04890 8.31471 8.43818 8.84030 9.01073 9.61797 11.10323 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.003958 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.580995 B = 7072.337685 C = 7796.049183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.163 3.837 4 C -0.252 4.252 5 C 0.127 3.873 6 N -0.471 5.471 7 C 0.131 3.869 8 C 0.555 3.445 9 O -0.529 6.529 10 N -0.578 5.578 11 C 0.078 3.922 12 C -0.136 4.136 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.110 3.890 25 C -0.148 4.148 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.123 0.877 39 H 0.045 0.955 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.415 0.478 -1.704 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.109 3.891 4 C -0.273 4.273 5 C -0.031 4.031 6 N -0.187 5.187 7 C -0.005 4.005 8 C 0.339 3.661 9 O -0.405 6.405 10 N -0.308 5.308 11 C -0.045 4.045 12 C -0.174 4.174 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.010 4.010 25 C -0.169 4.169 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.181 0.819 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.063 0.937 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.445 0.374 -1.986 20.545 hybrid contribution 0.237 -0.453 0.040 0.513 sum -20.208 -0.079 -1.946 20.302 Atomic orbital electron populations 1.23144 0.77791 1.04417 1.01615 1.86104 1.21834 1.26135 1.87840 1.19210 0.92111 0.84742 0.93015 1.22305 1.01492 0.93215 1.10303 1.22733 0.90231 0.97154 0.93008 1.67798 1.06552 1.30200 1.14158 1.21419 0.95270 0.88331 0.95486 1.17797 0.84926 0.83456 0.79913 1.90815 1.63192 1.38495 1.48048 1.48365 1.09409 1.13803 1.59267 1.22683 0.98478 0.89083 0.94296 1.22044 0.98253 1.00195 0.96891 1.21694 0.92768 1.00112 1.00310 1.18964 0.94311 0.92383 0.92212 0.95360 1.21124 0.90384 0.98104 1.46160 0.92297 1.25063 0.98915 0.95078 0.95034 1.69895 1.34496 1.02744 1.44685 0.86537 0.85589 0.78237 0.77645 1.19812 1.21049 1.20976 1.22379 0.73956 1.04807 0.99874 1.21415 0.91848 0.99882 1.03771 0.87829 0.92292 0.92317 0.84179 0.81877 0.92394 0.85512 0.92406 0.92691 0.93284 0.93240 0.92716 0.85951 0.93652 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.40 10.51 -18.94 -0.20 -3.60 16 3 C 0.16 2.01 6.73 -38.85 -0.26 1.74 16 4 C -0.25 -2.44 9.11 -39.19 -0.36 -2.80 16 5 C 0.13 1.34 11.17 -17.62 -0.20 1.14 16 6 N -0.47 -6.86 6.39 -9.87 -0.06 -6.92 16 7 C 0.13 2.26 6.44 -83.04 -0.53 1.73 16 8 C 0.55 12.04 7.61 -12.18 -0.09 11.95 16 9 O -0.53 -13.36 15.95 5.35 0.09 -13.28 16 10 N -0.58 -12.54 2.97 -173.75 -0.52 -13.05 16 11 C 0.08 1.38 5.98 -3.71 -0.02 1.35 16 12 C -0.14 -2.39 6.11 -26.45 -0.16 -2.55 16 13 C -0.11 -2.32 5.11 -26.53 -0.14 -2.46 16 14 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.36 8.56 -34.44 -0.29 -14.65 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -26.08 11.39 55.43 0.63 -25.44 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.11 2.77 5.40 -3.71 -0.02 2.75 16 25 C -0.15 -2.29 9.59 -38.89 -0.37 -2.66 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 28 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 29 H 0.14 0.86 6.45 -52.48 -0.34 0.52 16 30 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.13 2.04 4.00 -77.74 -0.31 1.73 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 3.55 5.12 -51.93 -0.27 3.29 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.15 2.49 7.80 -52.49 -0.41 2.08 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -33.02 325.32 -7.41 -40.43 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.47 Total: 1.26 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.76 Total: -0.84 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.05 Total: -45.42 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.11 Total: -16.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.02 -7.41 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.588 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds