Wall clock time and date at job start Fri Apr 10 2020 19:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35743 * 117.00409 * 2 1 4 4 C 1.39209 * 120.80920 * 359.97438 * 3 2 1 5 5 C 1.38313 * 119.28851 * 180.02562 * 4 3 2 6 6 N 1.31618 * 120.97099 * 0.02562 * 5 4 3 7 7 C 1.32800 * 121.77714 * 359.97438 * 6 5 4 8 8 C 1.48183 * 119.69199 * 180.02562 * 7 6 5 9 9 O 1.21515 * 119.99807 * 202.50873 * 8 7 6 10 10 N 1.34775 * 120.00305 * 22.51112 * 8 7 6 11 11 C 1.46925 * 120.63069 * 359.72989 * 10 8 7 12 12 C 1.53197 * 108.89231 * 126.34148 * 11 10 8 13 13 C 1.53345 * 109.14970 * 54.58068 * 12 11 10 14 14 C 1.53047 * 109.60632 * 298.71064 * 13 12 11 15 15 H 1.09000 * 109.49515 * 301.42088 * 14 13 12 16 16 C 1.50698 * 109.49709 * 181.32672 * 14 13 12 17 17 H 1.07994 * 120.00006 * 0.16132 * 16 14 13 18 18 C 1.37878 * 119.99705 * 180.16171 * 16 14 13 19 19 N 1.31510 * 120.00447 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99846 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46816 * 119.99863 * 20 18 16 23 23 H 1.48495 * 109.47447 * 240.00213 * 20 18 16 24 24 C 1.46923 * 120.63208 * 179.74982 * 10 8 7 25 25 C 1.39098 * 120.60771 * 0.27257 * 7 6 5 26 26 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47654 * 300.00077 * 1 2 3 28 28 H 1.09000 * 109.47016 * 60.00730 * 1 2 3 29 29 H 1.08004 * 120.35966 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.51788 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.58964 * 246.20017 * 11 10 8 32 32 H 1.09001 * 109.58538 * 6.48622 * 11 10 8 33 33 H 1.08999 * 109.49395 * 174.66074 * 12 11 10 34 34 H 1.09000 * 109.49614 * 294.75133 * 12 11 10 35 35 H 1.09000 * 109.41940 * 178.67578 * 13 12 11 36 36 H 1.08998 * 109.42581 * 58.74700 * 13 12 11 37 37 H 0.97000 * 120.00467 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.58912 * 353.37796 * 24 10 8 39 39 H 1.09005 * 109.58449 * 113.80006 * 24 10 8 40 40 H 1.07995 * 120.50971 * 179.72042 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3038 2.3876 -0.0005 5 6 1.9642 3.6028 -0.0011 6 7 3.2792 3.6590 -0.0016 7 6 4.0261 2.5609 -0.0011 8 6 5.5033 2.6780 -0.0011 9 8 6.1858 1.7567 -0.4036 10 7 6.0900 3.8063 0.4453 11 6 5.2781 4.9310 0.9295 12 6 5.7499 5.3141 2.3358 13 6 7.2575 5.5920 2.3023 14 6 8.0031 4.3282 1.8672 15 1 7.7790 3.5170 2.5598 16 6 9.4864 4.5944 1.8665 17 1 9.8606 5.5668 2.1507 18 6 10.3657 3.5965 1.5030 19 7 9.9101 2.4123 1.1575 20 14 12.2043 3.9267 1.5015 21 1 12.4561 5.3270 1.9272 22 1 12.8752 2.9952 2.4435 23 1 12.7432 3.7203 0.1333 24 6 7.5535 3.9351 0.4565 25 6 3.4346 1.3020 -0.0057 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 0.2243 2.3532 -0.0014 30 1 1.3926 4.5191 -0.0019 31 1 5.3969 5.7826 0.2597 32 1 4.2292 4.6365 0.9636 33 1 5.2192 6.2068 2.6669 34 1 5.5467 4.4934 3.0238 35 1 7.5937 5.8879 3.2960 36 1 7.4624 6.3959 1.5953 37 1 10.5286 1.7104 0.9014 38 1 8.0063 2.9827 0.1808 39 1 7.8579 4.7055 -0.2520 40 1 4.0435 0.4101 -0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:51 Heat of formation + Delta-G solvation = -45.287767 kcal Electronic energy + Delta-G solvation = -23249.766203 eV Core-core repulsion = 19836.531985 eV Total energy + Delta-G solvation = -3413.234218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05715 -40.71327 -39.12822 -38.35164 -35.31962 -33.58081 -32.73549 -32.46047 -31.36470 -28.57961 -27.24881 -26.57512 -24.57192 -24.27414 -23.39645 -21.76571 -20.44194 -19.08751 -18.53508 -18.23510 -17.33788 -16.97207 -16.87872 -16.70776 -16.45361 -16.13064 -15.57496 -15.27386 -14.95673 -14.75088 -14.55158 -14.49631 -14.20616 -13.80735 -13.51048 -13.35178 -12.90514 -12.74835 -12.48678 -12.32872 -12.27828 -12.17535 -11.84173 -11.66730 -11.30609 -11.07155 -10.96452 -10.54747 -10.36080 -10.17111 -9.81029 -9.42370 -8.11071 -6.28918 -0.42176 0.19289 1.39916 1.41080 1.53836 1.68434 1.88572 2.31034 2.42714 2.71483 3.09332 3.17873 3.60273 3.73289 3.95481 4.06801 4.24047 4.25772 4.35687 4.38942 4.41653 4.49880 4.63483 4.71919 4.77303 4.79183 4.88569 4.93818 5.03770 5.10438 5.25614 5.27917 5.36854 5.47078 5.56708 5.70978 5.88555 5.97218 6.17071 6.31485 6.54635 6.74556 6.84032 7.18177 7.41401 8.92789 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.003958 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.580995 B = 7072.337685 C = 7796.049183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.329 6.329 3 C 0.164 3.836 4 C -0.224 4.224 5 C 0.135 3.865 6 N -0.485 5.485 7 C 0.111 3.889 8 C 0.544 3.456 9 O -0.585 6.585 10 N -0.584 5.584 11 C 0.075 3.925 12 C -0.127 4.127 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.015 1.015 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.917 5.917 20 Si 0.962 3.038 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.122 3.878 25 C -0.168 4.168 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.190 0.810 30 H 0.215 0.785 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.103 0.897 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.167 2.770 -1.367 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.110 3.890 4 C -0.244 4.244 5 C -0.023 4.023 6 N -0.201 5.201 7 C -0.024 4.024 8 C 0.331 3.669 9 O -0.466 6.466 10 N -0.314 5.314 11 C -0.046 4.046 12 C -0.165 4.165 13 C -0.143 4.143 14 C 0.020 3.980 15 H 0.003 0.997 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.787 3.213 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.000 4.000 25 C -0.191 4.191 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.207 0.793 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.122 0.878 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.239 2.698 -1.630 24.443 hybrid contribution 1.185 -1.233 -0.080 1.712 sum -23.054 1.465 -1.710 23.164 Atomic orbital electron populations 1.23567 0.74854 1.06323 1.03412 1.86096 1.24805 1.25728 1.87442 1.19191 0.90902 0.86458 0.92404 1.22798 1.03649 0.91388 1.06544 1.23573 0.88655 0.99508 0.90548 1.67551 1.08607 1.28841 1.15142 1.20537 0.92537 0.89922 0.99415 1.18581 0.87307 0.82450 0.78539 1.90758 1.65256 1.40246 1.50294 1.48412 1.08213 1.15281 1.59446 1.23042 0.99222 0.88020 0.94343 1.22018 0.96012 1.01760 0.96729 1.21591 0.94776 0.97552 1.00394 1.18895 0.94366 0.93346 0.91368 0.99694 1.21540 0.91844 0.98228 1.45701 0.91785 1.25952 1.03834 0.94759 0.94645 1.70103 1.35922 1.03769 1.45778 0.85448 0.79666 0.78649 0.77552 1.18312 1.20779 1.20800 1.21828 0.76705 1.02051 0.99438 1.21264 0.93866 0.98438 1.05509 0.86235 0.90358 0.90384 0.79318 0.76872 0.91101 0.83056 0.87823 0.93848 0.92913 0.92434 0.93094 0.90423 0.94236 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.21 16 2 O -0.33 -6.62 10.51 -90.68 -0.95 -7.57 16 3 C 0.16 3.73 6.73 22.74 0.15 3.89 16 4 C -0.22 -3.21 9.11 22.52 0.21 -3.01 16 5 C 0.13 2.18 11.17 84.74 0.95 3.13 16 6 N -0.49 -13.03 6.39 -185.14 -1.18 -14.21 16 7 C 0.11 3.90 6.44 41.85 0.27 4.17 16 8 C 0.54 25.31 7.61 86.89 0.66 25.98 16 9 O -0.58 -32.61 15.95 -3.76 -0.06 -32.67 16 10 N -0.58 -26.52 2.97 -821.93 -2.44 -28.96 16 11 C 0.07 2.57 5.98 86.36 0.52 3.09 16 12 C -0.13 -4.27 6.11 30.78 0.19 -4.08 16 13 C -0.11 -4.38 5.11 30.73 0.16 -4.22 16 14 C 0.04 2.11 2.25 -11.46 -0.03 2.09 16 15 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 16 C -0.53 -30.59 8.56 25.60 0.22 -30.37 16 17 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.01 0.42 5.30 84.66 0.45 0.87 16 19 N -0.92 -57.72 11.39 21.45 0.24 -57.48 16 20 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 C 0.12 6.55 5.40 86.36 0.47 7.02 16 25 C -0.17 -5.42 9.59 22.72 0.22 -5.20 16 26 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.08 0.36 7.71 -2.39 -0.02 0.34 16 28 H 0.08 0.35 7.71 -2.39 -0.02 0.34 16 29 H 0.19 0.90 6.45 -2.91 -0.02 0.88 16 30 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.15 4.53 4.00 -53.35 -0.21 4.31 16 33 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.08 4.92 5.12 -2.38 -0.01 4.90 16 39 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.13 4.63 7.80 -2.91 -0.02 4.61 16 Total: -1.00 -81.10 325.32 4.01 -77.09 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.85 Total: 11.69 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.54 Total: 4.54 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.38 Total: -100.65 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.01 Total: -40.24 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.10 4.01 -77.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.798 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds