Wall clock time and date at job start Fri Apr 10 2020 19:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35497 * 117.00201 * 2 1 4 4 C 1.39163 * 119.52915 * 180.02562 * 3 2 1 5 5 C 1.37951 * 119.26382 * 179.97438 * 4 3 2 6 6 C 1.40284 * 118.35899 * 359.97438 * 5 4 3 7 7 C 1.47618 * 120.49915 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99964 * 309.44634 * 7 6 5 9 9 N 1.34777 * 120.00084 * 129.44412 * 7 6 5 10 10 C 1.46932 * 120.62659 * 3.81004 * 9 7 6 11 11 C 1.53192 * 108.77482 * 233.58258 * 10 9 7 12 12 C 1.53047 * 109.31157 * 305.36780 * 11 10 9 13 13 C 1.53042 * 109.53936 * 61.36366 * 12 11 10 14 14 H 1.08999 * 109.49643 * 58.58744 * 13 12 11 15 15 C 1.50700 * 109.49584 * 178.65146 * 13 12 11 16 16 H 1.07994 * 119.99988 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99929 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99707 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00225 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47202 * 59.99562 * 19 17 15 21 21 H 1.48500 * 109.47356 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47053 * 299.99903 * 19 17 15 23 23 C 1.46924 * 120.63513 * 183.52530 * 9 7 6 24 24 C 1.39524 * 119.00180 * 0.02562 * 6 5 4 25 25 N 1.31665 * 120.62983 * 359.73931 * 24 6 5 26 26 H 1.09003 * 109.47693 * 299.99990 * 1 2 3 27 27 H 1.09004 * 109.47488 * 60.00569 * 1 2 3 28 28 H 1.09008 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.36789 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.82518 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.58968 * 353.37128 * 10 9 7 32 32 H 1.08997 * 109.58546 * 113.65436 * 10 9 7 33 33 H 1.08997 * 109.49558 * 65.31277 * 11 10 9 34 34 H 1.08995 * 109.49864 * 185.41746 * 11 10 9 35 35 H 1.08997 * 109.45968 * 181.38725 * 12 11 10 36 36 H 1.09001 * 109.45542 * 301.34372 * 12 11 10 37 37 H 0.97006 * 119.99654 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.58909 * 246.20685 * 23 9 7 39 39 H 1.09004 * 109.58318 * 6.62899 * 23 9 7 40 40 H 1.08005 * 119.68457 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2686 -0.0005 5 6 4.0550 2.5006 -0.0011 6 6 3.2523 3.6511 -0.0016 7 6 3.8668 4.9934 -0.0028 8 8 4.7283 5.2682 0.8098 9 7 3.4727 5.9141 -0.9046 10 6 2.3755 5.6256 -1.8384 11 6 2.8625 5.8868 -3.2672 12 6 3.4105 7.3127 -3.3624 13 6 4.5989 7.4689 -2.4108 14 1 5.3704 6.7439 -2.6702 15 6 5.1584 8.8631 -2.5296 16 1 4.7112 9.5679 -3.2148 17 6 6.2407 9.2393 -1.7626 18 7 6.7844 8.3814 -0.9270 19 14 6.9338 10.9676 -1.9093 20 1 5.8824 11.9544 -1.5545 21 1 8.0870 11.1186 -0.9858 22 1 7.3836 11.2038 -3.3047 23 6 4.1278 7.2277 -0.9686 24 6 1.8645 3.5076 -0.0010 25 7 1.3137 2.3117 -0.0052 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.0210 0.3618 -0.0005 30 1 5.1323 2.5776 -0.0011 31 1 2.0762 4.5822 -1.7394 32 1 1.5266 6.2719 -1.6156 33 1 3.6504 5.1768 -3.5184 34 1 2.0311 5.7695 -3.9621 35 1 3.7351 7.5095 -4.3841 36 1 2.6292 8.0210 -3.0870 37 1 7.5456 8.6462 -0.3871 38 1 3.4197 8.0037 -0.6779 39 1 4.9850 7.2416 -0.2955 40 1 1.2360 4.3860 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:58 Heat of formation + Delta-G solvation = -35.197544 kcal Electronic energy + Delta-G solvation = -23227.711014 eV Core-core repulsion = 19814.914341 eV Total energy + Delta-G solvation = -3412.796673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91349 -39.40677 -37.77599 -36.65071 -33.47608 -32.63186 -31.90982 -30.95235 -29.64405 -27.58292 -25.20799 -25.11753 -23.65105 -23.01738 -21.82607 -20.11774 -18.71050 -18.45473 -17.45462 -16.88111 -16.24056 -16.09576 -15.40706 -14.76417 -14.67667 -14.52560 -14.10269 -13.91458 -13.74201 -13.36378 -13.26847 -12.79604 -12.67859 -12.50816 -12.13411 -12.06055 -11.86532 -11.40507 -11.00161 -10.89921 -10.54998 -10.42708 -10.26026 -10.06374 -9.99292 -9.89918 -9.34636 -9.15764 -8.94477 -8.53716 -8.45184 -7.79994 -6.01747 -4.10453 0.85059 1.11189 2.88406 3.12238 3.30950 3.37277 3.38341 3.53708 3.80987 4.11125 4.41519 4.74330 4.78938 4.96831 5.01176 5.10170 5.12809 5.26943 5.29430 5.39899 5.46805 5.51905 5.63248 5.74056 5.94940 6.06636 6.15809 6.21823 6.28182 6.57278 6.63985 6.82506 6.94171 7.00719 7.11174 7.21579 7.59884 7.62864 7.83648 7.96419 8.18060 8.35837 8.75971 8.93563 9.55293 11.03714 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.003797 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.769111 B = 7372.729494 C = 7885.603825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.307 6.307 3 C 0.326 3.674 4 C -0.192 4.192 5 C 0.004 3.996 6 C -0.202 4.202 7 C 0.555 3.445 8 O -0.530 6.530 9 N -0.597 5.597 10 C 0.100 3.900 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.113 3.887 24 C 0.168 3.832 25 N -0.542 5.542 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.045 0.955 39 H 0.123 0.877 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 -14.046 -0.101 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.214 6.214 3 C 0.147 3.853 4 C -0.213 4.213 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.341 3.659 8 O -0.407 6.407 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.518 5.518 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.007 4.007 24 C 0.011 3.989 25 N -0.265 5.265 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.141 0.859 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.113 -14.257 0.466 18.713 hybrid contribution 0.944 1.107 -0.133 1.461 sum -11.169 -13.150 0.333 17.256 Atomic orbital electron populations 1.22873 0.77160 1.02881 1.02650 1.86195 1.23015 1.24643 1.87545 1.19997 0.89452 0.84653 0.91184 1.20981 0.91800 0.99448 1.09022 1.21468 1.01051 0.89747 0.89894 1.21036 0.95233 0.95754 1.08718 1.17932 0.82688 0.83461 0.81857 1.90821 1.31867 1.79675 1.38303 1.48474 1.34872 1.16732 1.32790 1.21907 0.89734 1.00414 0.90296 1.21937 1.00313 0.99805 0.95066 1.21636 0.99335 0.93337 1.00543 1.19040 0.91973 0.97270 0.89532 0.95260 1.21040 1.14157 0.97287 1.23587 0.92382 1.25053 0.96492 0.97302 0.95151 1.69875 1.23127 1.34389 1.24428 0.86642 0.78600 0.84767 0.77900 1.20233 1.21251 1.20301 1.22441 0.97427 0.77977 1.02855 1.22635 0.91576 0.93792 0.90857 1.67306 1.40450 0.98574 1.20219 0.92212 0.92135 0.88689 0.83592 0.83238 0.90856 0.91644 0.92162 0.92183 0.92964 0.93105 0.92558 0.93687 0.85913 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.37 101.05 1.05 1.37 16 2 O -0.31 -3.49 10.46 -18.18 -0.19 -3.68 16 3 C 0.33 4.15 7.49 -16.96 -0.13 4.02 16 4 C -0.19 -2.32 10.02 -39.34 -0.39 -2.71 16 5 C 0.00 0.06 9.88 -38.92 -0.38 -0.33 16 6 C -0.20 -3.15 5.02 -104.82 -0.53 -3.68 16 7 C 0.55 11.02 7.25 -12.43 -0.09 10.93 16 8 O -0.53 -12.81 16.48 5.29 0.09 -12.72 16 9 N -0.60 -11.67 2.97 -173.70 -0.52 -12.19 16 10 C 0.10 1.53 5.38 -3.71 -0.02 1.51 16 11 C -0.13 -2.11 6.08 -26.61 -0.16 -2.28 16 12 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 13 C 0.04 0.99 2.26 -91.43 -0.21 0.78 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.52 -13.92 8.56 -34.44 -0.29 -14.21 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.88 -25.34 11.41 55.43 0.63 -24.71 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.11 2.67 5.42 -3.49 -0.02 2.65 16 24 C 0.17 2.27 8.54 -17.14 -0.15 2.13 16 25 N -0.54 -7.14 9.18 -12.96 -0.12 -7.26 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.07 0.98 4.55 -51.93 -0.24 0.75 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.12 3.41 5.17 -51.93 -0.27 3.14 16 40 H 0.17 1.95 7.05 -52.48 -0.37 1.58 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -31.38 328.30 -7.22 -38.60 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.48 Total: 1.45 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.55 Total: -0.46 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.00 Total: -44.15 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.10 Total: -16.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.38 -7.22 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.400 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds