Wall clock time and date at job start Fri Apr 10 2020 19:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35497 * 117.00201 * 2 1 4 4 C 1.39163 * 119.52915 * 180.02562 * 3 2 1 5 5 C 1.37951 * 119.26382 * 179.97438 * 4 3 2 6 6 C 1.40284 * 118.35899 * 359.97438 * 5 4 3 7 7 C 1.47618 * 120.49915 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99964 * 309.44634 * 7 6 5 9 9 N 1.34777 * 120.00084 * 129.44412 * 7 6 5 10 10 C 1.46932 * 120.62659 * 3.81004 * 9 7 6 11 11 C 1.53192 * 108.77482 * 233.58258 * 10 9 7 12 12 C 1.53047 * 109.31157 * 305.36780 * 11 10 9 13 13 C 1.53042 * 109.53936 * 61.36366 * 12 11 10 14 14 H 1.08999 * 109.49643 * 58.58744 * 13 12 11 15 15 C 1.50700 * 109.49584 * 178.65146 * 13 12 11 16 16 H 1.07994 * 119.99988 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99929 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99707 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00225 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47202 * 59.99562 * 19 17 15 21 21 H 1.48500 * 109.47356 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47053 * 299.99903 * 19 17 15 23 23 C 1.46924 * 120.63513 * 183.52530 * 9 7 6 24 24 C 1.39524 * 119.00180 * 0.02562 * 6 5 4 25 25 N 1.31665 * 120.62983 * 359.73931 * 24 6 5 26 26 H 1.09003 * 109.47693 * 299.99990 * 1 2 3 27 27 H 1.09004 * 109.47488 * 60.00569 * 1 2 3 28 28 H 1.09008 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.36789 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.82518 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.58968 * 353.37128 * 10 9 7 32 32 H 1.08997 * 109.58546 * 113.65436 * 10 9 7 33 33 H 1.08997 * 109.49558 * 65.31277 * 11 10 9 34 34 H 1.08995 * 109.49864 * 185.41746 * 11 10 9 35 35 H 1.08997 * 109.45968 * 181.38725 * 12 11 10 36 36 H 1.09001 * 109.45542 * 301.34372 * 12 11 10 37 37 H 0.97006 * 119.99654 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.58909 * 246.20685 * 23 9 7 39 39 H 1.09004 * 109.58318 * 6.62899 * 23 9 7 40 40 H 1.08005 * 119.68457 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2686 -0.0005 5 6 4.0550 2.5006 -0.0011 6 6 3.2523 3.6511 -0.0016 7 6 3.8668 4.9934 -0.0028 8 8 4.7283 5.2682 0.8098 9 7 3.4727 5.9141 -0.9046 10 6 2.3755 5.6256 -1.8384 11 6 2.8625 5.8868 -3.2672 12 6 3.4105 7.3127 -3.3624 13 6 4.5989 7.4689 -2.4108 14 1 5.3704 6.7439 -2.6702 15 6 5.1584 8.8631 -2.5296 16 1 4.7112 9.5679 -3.2148 17 6 6.2407 9.2393 -1.7626 18 7 6.7844 8.3814 -0.9270 19 14 6.9338 10.9676 -1.9093 20 1 5.8824 11.9544 -1.5545 21 1 8.0870 11.1186 -0.9858 22 1 7.3836 11.2038 -3.3047 23 6 4.1278 7.2277 -0.9686 24 6 1.8645 3.5076 -0.0010 25 7 1.3137 2.3117 -0.0052 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.0210 0.3618 -0.0005 30 1 5.1323 2.5776 -0.0011 31 1 2.0762 4.5822 -1.7394 32 1 1.5266 6.2719 -1.6156 33 1 3.6504 5.1768 -3.5184 34 1 2.0311 5.7695 -3.9621 35 1 3.7351 7.5095 -4.3841 36 1 2.6292 8.0210 -3.0870 37 1 7.5456 8.6462 -0.3871 38 1 3.4197 8.0037 -0.6779 39 1 4.9850 7.2416 -0.2955 40 1 1.2360 4.3860 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597915491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:40:57 Heat of formation + Delta-G solvation = -56.874279 kcal Electronic energy + Delta-G solvation = -23228.650987 eV Core-core repulsion = 19814.914341 eV Total energy + Delta-G solvation = -3413.736647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02934 -40.76662 -38.85085 -38.24746 -35.33665 -33.68475 -33.57349 -32.21733 -31.24654 -28.40668 -27.03339 -26.59442 -24.76861 -24.21360 -23.39731 -21.67563 -20.16390 -19.46181 -18.82886 -18.27699 -17.85365 -17.14869 -16.91043 -16.51248 -15.93152 -15.74201 -15.36375 -15.21856 -15.10666 -14.51124 -14.49068 -14.38551 -14.24192 -13.78090 -13.76238 -13.46130 -12.84953 -12.75317 -12.71966 -12.30567 -12.27844 -12.15979 -11.80656 -11.65332 -11.32909 -11.09009 -10.96874 -10.90322 -10.61566 -10.49987 -9.63261 -9.41306 -8.10459 -6.27143 -0.24127 0.07394 1.42180 1.43225 1.51658 1.66042 2.00382 2.15142 2.43161 2.62404 3.14032 3.18097 3.48653 3.72844 3.98438 4.02051 4.03263 4.15598 4.32571 4.47537 4.48449 4.56541 4.57960 4.67373 4.74192 4.78090 4.81736 4.84419 5.03629 5.09240 5.20612 5.24090 5.26691 5.36308 5.53771 5.61893 5.89784 5.98896 6.10161 6.32997 6.57559 6.60610 6.85178 7.21076 7.43069 8.92967 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.003797 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.769111 B = 7372.729494 C = 7885.603825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.327 3.673 4 C -0.183 4.183 5 C -0.002 4.002 6 C -0.221 4.221 7 C 0.552 3.448 8 O -0.587 6.587 9 N -0.599 5.599 10 C 0.097 3.903 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.039 3.961 14 H -0.013 1.013 15 C -0.536 4.536 16 H 0.063 0.937 17 C 0.010 3.990 18 N -0.915 5.915 19 Si 0.957 3.043 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.126 3.874 24 C 0.179 3.821 25 N -0.541 5.541 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.173 0.827 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.591 -15.300 -1.204 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.216 6.216 3 C 0.148 3.852 4 C -0.203 4.203 5 C -0.027 4.027 6 C -0.227 4.227 7 C 0.341 3.659 8 O -0.469 6.469 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.164 4.164 12 C -0.142 4.142 13 C 0.020 3.980 14 H 0.005 0.995 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.189 4.189 18 N -0.554 5.554 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.194 1.194 23 C 0.004 3.996 24 C 0.022 3.978 25 N -0.265 5.265 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.191 0.809 30 H 0.164 0.836 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.832 -15.536 -0.680 21.490 hybrid contribution 1.709 1.374 0.200 2.202 sum -13.123 -14.162 -0.480 19.313 Atomic orbital electron populations 1.23160 0.75353 1.04988 1.02666 1.86213 1.24779 1.23673 1.86935 1.20256 0.89852 0.85083 0.89985 1.21172 0.91969 0.99483 1.07702 1.21530 1.01060 0.90137 0.90021 1.20687 0.96374 0.93471 1.12162 1.18566 0.81816 0.84815 0.80740 1.90780 1.34589 1.80906 1.40579 1.48461 1.35577 1.15299 1.33597 1.22239 0.88771 1.02651 0.88802 1.21905 1.01331 0.96763 0.96422 1.21521 0.97508 0.96252 0.98968 1.18972 0.92938 0.94959 0.91121 0.99496 1.21491 1.14241 0.98566 1.23181 0.91899 1.25886 0.97072 1.01087 0.94875 1.70078 1.23496 1.36355 1.25443 0.85623 0.77856 0.80268 0.78003 1.19171 1.21567 1.19401 1.21861 0.96120 0.80246 1.01401 1.22791 0.90544 0.94656 0.89769 1.67401 1.40227 0.98440 1.20463 0.92306 0.91948 0.85679 0.80938 0.83588 0.88282 0.89046 0.93382 0.87832 0.92940 0.92086 0.93128 0.93902 0.90508 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.37 113.37 1.18 1.61 16 2 O -0.31 -6.03 10.46 -87.98 -0.92 -6.95 16 3 C 0.33 7.42 7.49 84.83 0.64 8.06 16 4 C -0.18 -4.02 10.02 22.42 0.22 -3.79 16 5 C 0.00 -0.05 9.88 22.70 0.22 0.17 16 6 C -0.22 -6.80 5.02 -19.99 -0.10 -6.90 16 7 C 0.55 22.65 7.25 86.72 0.63 23.28 16 8 O -0.59 -30.27 16.48 -3.97 -0.07 -30.34 16 9 N -0.60 -23.72 2.97 -821.72 -2.44 -26.15 16 10 C 0.10 2.74 5.38 86.36 0.46 3.20 16 11 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16 12 C -0.10 -3.96 5.10 30.62 0.16 -3.80 16 13 C 0.04 1.96 2.26 -11.32 -0.03 1.93 16 14 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 15 C -0.54 -29.25 8.56 25.60 0.22 -29.03 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.01 0.58 5.30 84.65 0.45 1.02 16 18 N -0.92 -55.40 11.41 21.45 0.24 -55.16 16 19 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 C 0.13 6.19 5.42 86.51 0.47 6.66 16 24 C 0.18 4.46 8.54 85.03 0.73 5.18 16 25 N -0.54 -12.72 9.18 -307.81 -2.82 -15.55 16 26 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 27 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 28 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.10 2.34 4.55 -2.39 -0.01 2.33 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 38 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 4.56 5.17 -2.39 -0.01 4.55 16 40 H 0.18 3.79 7.05 -2.91 -0.02 3.77 16 Total: -1.00 -72.64 328.30 2.50 -70.14 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.04 Total: 13.86 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.43 Total: 4.08 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -5.02 Total: -96.86 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.99 Total: -37.29 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.64 2.50 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.270 kcal (2) G-P(sol) polarization free energy of solvation -72.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds