Wall clock time and date at job start Fri Apr 10 2020 19:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 S 1.65594 * 120.00414 * 119.99671 * 12 2 1 15 15 O 1.42095 * 106.40343 * 203.53804 * 14 12 2 16 16 O 1.42099 * 106.40342 * 336.46210 * 14 12 2 17 17 N 1.65600 * 107.21781 * 89.99807 * 14 12 2 18 18 C 1.46497 * 119.99953 * 64.99924 * 17 14 12 19 19 C 1.53001 * 109.47179 * 165.00139 * 18 17 14 20 20 C 1.53788 * 113.61559 * 274.13868 * 19 18 17 21 21 C 1.53954 * 87.01816 * 220.04742 * 20 19 18 22 22 C 1.53000 * 113.73978 * 139.94353 * 21 20 19 23 23 C 1.53782 * 87.11558 * 25.36303 * 21 20 19 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 29 29 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 30 30 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 31 31 H 0.97006 * 120.00444 * 245.00595 * 17 14 12 32 32 H 1.08999 * 109.47403 * 285.00204 * 18 17 14 33 33 H 1.09003 * 109.47012 * 45.00325 * 18 17 14 34 34 H 1.08997 * 112.85014 * 45.33275 * 19 18 17 35 35 H 1.08998 * 113.61168 * 334.56792 * 20 19 18 36 36 H 1.09003 * 113.61263 * 105.46923 * 20 19 18 37 37 H 1.08999 * 113.53766 * 270.81100 * 21 20 19 38 38 H 1.08999 * 109.47417 * 322.40429 * 22 21 20 39 39 H 1.09005 * 109.47183 * 82.40494 * 22 21 20 40 40 H 1.08998 * 109.47252 * 202.39885 * 22 21 20 41 41 H 1.08991 * 113.61281 * 220.09104 * 23 21 20 42 42 H 1.08997 * 113.61321 * 89.18407 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5259 16 8 2.6904 1.4974 -2.1192 17 7 4.5438 -0.1040 -1.8180 18 6 5.1358 -1.4438 -1.8416 19 6 6.6578 -1.3308 -1.7335 20 6 7.3573 -1.1177 -3.0864 21 6 8.4453 -2.0848 -2.5852 22 6 8.9503 -3.0527 -3.6571 23 6 7.3731 -2.6905 -1.6641 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 0.7377 -2.1443 -1.9995 29 1 2.4630 -2.5817 -1.9865 30 1 1.5296 -2.5968 -0.4710 31 1 5.0734 0.6552 -1.5281 32 1 4.7541 -2.0245 -1.0019 33 1 4.8737 -1.9405 -2.7758 34 1 6.9765 -0.6299 -0.9621 35 1 6.7910 -1.4999 -3.9357 36 1 7.7136 -0.0988 -3.2380 37 1 9.2537 -1.5895 -2.0474 38 1 8.1174 -3.3631 -4.2879 39 1 9.7041 -2.5566 -4.2686 40 1 9.3895 -3.9280 -3.1784 41 1 7.7422 -2.9393 -0.6693 42 1 6.8112 -3.5034 -2.1239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598622647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:02 Heat of formation + Delta-G solvation = -70.662717 kcal Electronic energy + Delta-G solvation = -22499.855933 eV Core-core repulsion = 19220.965326 eV Total energy + Delta-G solvation = -3278.890607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39052 -36.63455 -36.12357 -35.20915 -34.55723 -32.59415 -30.06813 -29.07157 -26.02960 -25.67782 -25.43481 -25.17465 -21.27823 -20.74081 -19.67658 -18.59794 -17.10547 -16.75450 -16.36832 -15.97091 -15.62865 -15.00088 -14.36718 -14.25100 -13.81631 -13.52969 -13.31442 -13.15946 -12.83063 -12.61055 -12.48094 -11.98708 -11.83895 -11.77556 -11.53798 -11.46059 -11.34545 -11.20475 -11.09087 -10.96195 -10.87357 -10.66825 -10.43432 -10.25645 -10.21732 -10.15789 -10.05690 -9.33670 -9.01541 -8.48108 -7.94949 -6.09380 -4.17889 1.31018 3.24784 3.30908 3.31421 3.55217 4.16881 4.35023 4.45033 4.54699 4.59390 4.72573 5.05477 5.19684 5.21178 5.31984 5.40962 5.51650 5.59204 5.59443 5.69804 5.70141 5.81559 5.84573 5.96873 6.00559 6.16532 6.18413 6.29739 6.36476 6.49640 6.67351 6.89044 6.89184 7.12721 7.29444 7.55602 7.63526 7.79132 8.05681 8.26420 8.84675 9.48184 10.95628 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.005480 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.316536 B = 5108.542646 C = 6271.404450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.783 3.217 15 O -1.001 7.001 16 O -0.984 6.984 17 N -1.126 6.126 18 C 0.132 3.868 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.129 4.129 24 H 0.032 0.968 25 H 0.092 0.908 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.412 0.588 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 -6.683 -8.024 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.984 6.984 16 O -0.968 6.968 17 N -0.885 5.885 18 C 0.006 3.994 19 C -0.136 4.136 20 C -0.170 4.170 21 C -0.136 4.136 22 C -0.199 4.199 23 C -0.168 4.168 24 H 0.051 0.949 25 H 0.111 0.889 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.245 0.755 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.088 -6.230 -8.720 15.420 hybrid contribution 0.655 -0.354 1.494 1.669 sum 11.743 -6.583 -7.226 15.279 Atomic orbital electron populations 1.22054 0.98019 0.99629 1.00732 1.18711 0.91837 0.92743 0.80173 0.92383 1.21335 1.31863 1.13099 0.90187 0.91996 1.24926 0.94975 0.94988 0.98976 1.69879 1.36182 1.22565 1.23884 0.86586 0.79093 0.79659 0.82153 1.20333 1.21271 1.20286 1.57700 1.64556 1.21308 1.39764 1.21197 0.98948 0.82141 1.01764 1.01746 0.72647 0.73069 0.73333 1.93530 1.86126 1.76407 1.42334 1.93588 1.83724 1.32570 1.86888 1.55969 1.32155 1.14968 1.85430 1.21197 0.93035 0.83616 1.01586 1.22711 0.93684 0.98585 0.98587 1.23166 0.97107 0.99594 0.97151 1.22494 0.96498 0.97315 0.97269 1.21721 1.01048 0.98850 0.98298 1.23000 0.97153 0.96595 1.00002 0.94898 0.88940 0.96902 0.92601 0.93914 0.93327 0.90231 0.75532 0.91490 0.90992 0.88536 0.89767 0.91582 0.89511 0.92512 0.92883 0.92698 0.91285 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.97 37.16 0.33 -3.13 16 2 C 0.27 6.55 2.62 -69.08 -0.18 6.37 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.53 -13.36 7.99 -34.44 -0.28 -13.64 16 5 H 0.06 1.52 7.33 -52.48 -0.38 1.13 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.99 -20.49 3.12 -115.84 -0.36 -20.85 16 13 C 0.11 1.88 9.28 59.85 0.56 2.43 16 14 S 2.78 54.68 6.09 -107.50 -0.66 54.03 16 15 O -1.00 -20.54 16.68 -57.17 -0.95 -21.50 16 16 O -0.98 -22.61 16.70 -57.17 -0.95 -23.57 16 17 N -1.13 -17.75 6.05 -10.61 -0.06 -17.81 16 18 C 0.13 1.78 6.07 -4.04 -0.02 1.76 16 19 C -0.12 -1.28 3.78 -89.80 -0.34 -1.62 16 20 C -0.13 -1.35 7.20 -25.82 -0.19 -1.53 16 21 C -0.12 -1.04 4.36 -89.72 -0.39 -1.43 16 22 C -0.14 -1.12 9.71 37.16 0.36 -0.76 16 23 C -0.13 -1.24 7.21 -25.91 -0.19 -1.42 16 24 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.74 7.79 -51.92 -0.40 0.33 16 30 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 31 H 0.41 5.88 8.65 -34.48 -0.30 5.58 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.95 7.48 -51.93 -0.39 0.56 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.89 7.75 -51.93 -0.40 0.48 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.46 7.96 -51.93 -0.41 0.04 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -30.60 347.60 -9.66 -40.26 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.09 Total: 4.07 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.43 Total: -11.40 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.20 Total: -62.37 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.91 Total: -45.07 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.66 Total: 54.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.60 -9.66 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598622647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.405 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds