Wall clock time and date at job start Fri Apr 10 2020 19:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.46502 * 119.99711 * 299.99999 * 12 2 1 14 14 S 1.65594 * 120.00414 * 119.99671 * 12 2 1 15 15 O 1.42095 * 106.40343 * 203.53804 * 14 12 2 16 16 O 1.42099 * 106.40342 * 336.46210 * 14 12 2 17 17 N 1.65600 * 107.21781 * 89.99807 * 14 12 2 18 18 C 1.46497 * 119.99953 * 64.99924 * 17 14 12 19 19 C 1.53001 * 109.47179 * 165.00139 * 18 17 14 20 20 C 1.53788 * 113.61559 * 274.13868 * 19 18 17 21 21 C 1.53954 * 87.01816 * 220.04742 * 20 19 18 22 22 C 1.53000 * 113.73978 * 139.94353 * 21 20 19 23 23 C 1.53782 * 87.11558 * 25.36303 * 21 20 19 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 29 29 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 30 30 H 1.09006 * 109.47241 * 329.99804 * 13 12 2 31 31 H 0.97006 * 120.00444 * 245.00595 * 17 14 12 32 32 H 1.08999 * 109.47403 * 285.00204 * 18 17 14 33 33 H 1.09003 * 109.47012 * 45.00325 * 18 17 14 34 34 H 1.08997 * 112.85014 * 45.33275 * 19 18 17 35 35 H 1.08998 * 113.61168 * 334.56792 * 20 19 18 36 36 H 1.09003 * 113.61263 * 105.46923 * 20 19 18 37 37 H 1.08999 * 113.53766 * 270.81100 * 21 20 19 38 38 H 1.08999 * 109.47417 * 322.40429 * 22 21 20 39 39 H 1.09005 * 109.47183 * 82.40494 * 22 21 20 40 40 H 1.08998 * 109.47252 * 202.39885 * 22 21 20 41 41 H 1.08991 * 113.61281 * 220.09104 * 23 21 20 42 42 H 1.08997 * 113.61321 * 89.18407 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5259 16 8 2.6904 1.4974 -2.1192 17 7 4.5438 -0.1040 -1.8180 18 6 5.1358 -1.4438 -1.8416 19 6 6.6578 -1.3308 -1.7335 20 6 7.3573 -1.1177 -3.0864 21 6 8.4453 -2.0848 -2.5852 22 6 8.9503 -3.0527 -3.6571 23 6 7.3731 -2.6905 -1.6641 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 0.7377 -2.1443 -1.9995 29 1 2.4630 -2.5817 -1.9865 30 1 1.5296 -2.5968 -0.4710 31 1 5.0734 0.6552 -1.5281 32 1 4.7541 -2.0245 -1.0019 33 1 4.8737 -1.9405 -2.7758 34 1 6.9765 -0.6299 -0.9621 35 1 6.7910 -1.4999 -3.9357 36 1 7.7136 -0.0988 -3.2380 37 1 9.2537 -1.5895 -2.0474 38 1 8.1174 -3.3631 -4.2879 39 1 9.7041 -2.5566 -4.2686 40 1 9.3895 -3.9280 -3.1784 41 1 7.7422 -2.9393 -0.6693 42 1 6.8112 -3.5034 -2.1239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598622647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:01 Heat of formation + Delta-G solvation = -91.065250 kcal Electronic energy + Delta-G solvation = -22500.740653 eV Core-core repulsion = 19220.965326 eV Total energy + Delta-G solvation = -3279.775327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20662 -38.30943 -37.87327 -36.88830 -35.74525 -34.49215 -30.91913 -30.87251 -27.26371 -27.07518 -26.85515 -26.44226 -22.63505 -22.11738 -20.65624 -19.94842 -18.70394 -18.32595 -18.21411 -17.34179 -16.81822 -16.46813 -15.88685 -15.28593 -15.11706 -14.87648 -14.63482 -14.48083 -14.11385 -13.72535 -13.55792 -13.40982 -13.29133 -13.23556 -13.18329 -13.08682 -12.96972 -12.72984 -12.67255 -12.31341 -12.20899 -12.11582 -11.97858 -11.82136 -11.45554 -11.19088 -11.06884 -10.97625 -10.47692 -10.28857 -9.64955 -8.07363 -6.22350 -0.25830 1.48133 1.48357 1.55973 2.04414 2.47296 2.64691 3.21056 3.44506 3.67202 3.73911 3.81733 3.94241 4.09733 4.32051 4.42323 4.64420 4.70750 4.71621 4.78844 4.80250 4.87741 4.93568 4.97564 4.99508 4.99736 5.02740 5.16057 5.17701 5.25438 5.27747 5.32517 5.52930 5.62167 5.68709 5.70947 5.86016 6.07901 6.20937 6.30628 6.86745 7.47280 8.97106 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.005480 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.316536 B = 5108.542646 C = 6271.404450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.529 4.529 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.269 1.269 12 N -0.997 5.997 13 C 0.099 3.901 14 S 2.798 3.202 15 O -1.008 7.008 16 O -1.021 7.021 17 N -1.117 6.117 18 C 0.126 3.874 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.141 4.141 23 C -0.126 4.126 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.017 0.983 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.419 0.581 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.165 -8.506 -8.042 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.568 4.568 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.194 1.194 12 N -0.839 5.839 13 C -0.047 4.047 14 S 2.807 3.193 15 O -0.991 6.991 16 O -1.006 7.006 17 N -0.879 5.879 18 C 0.000 4.000 19 C -0.139 4.139 20 C -0.173 4.173 21 C -0.129 4.129 22 C -0.198 4.198 23 C -0.164 4.164 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.254 0.746 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.657 -8.074 -8.758 17.381 hybrid contribution 0.195 0.206 1.431 1.459 sum 12.852 -7.868 -7.327 16.756 Atomic orbital electron populations 1.21948 0.98006 1.00050 0.99876 1.18384 0.91874 0.91399 0.81468 0.95839 1.21598 1.31521 1.13117 0.90556 0.91113 1.25703 0.95214 0.95619 1.01893 1.70024 1.37468 1.24027 1.24330 0.85586 0.78686 0.78718 0.78428 1.19669 1.21660 1.19367 1.57590 1.65325 1.22433 1.38518 1.21406 1.00445 0.80573 1.02231 1.01138 0.73203 0.71921 0.73037 1.93514 1.86647 1.76319 1.42661 1.93533 1.84732 1.34999 1.87309 1.55675 1.30646 1.16469 1.85123 1.21438 0.94677 0.82096 1.01760 1.22746 0.91866 0.99936 0.99311 1.23191 0.97550 1.00133 0.96468 1.22466 0.96202 0.96962 0.97243 1.21716 1.01136 0.98929 0.98067 1.23018 0.97039 0.95752 1.00586 0.93716 0.91200 0.96358 0.92799 0.93143 0.90668 0.90396 0.74618 0.91603 0.90576 0.88459 0.90188 0.91473 0.88857 0.92751 0.92342 0.91930 0.90752 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 8.97 71.98 0.65 -6.07 16 2 C 0.27 13.42 2.62 44.25 0.12 13.54 16 3 H 0.02 1.33 6.91 -2.39 -0.02 1.31 16 4 C -0.53 -26.60 7.99 25.60 0.20 -26.40 16 5 H 0.07 3.36 7.33 -2.91 -0.02 3.34 16 6 C 0.02 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.05 11.32 21.45 0.24 -50.81 16 8 Si 0.96 40.96 29.54 68.60 2.03 42.99 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 N -1.00 -40.62 3.12 -520.42 -1.62 -42.24 16 13 C 0.10 3.34 9.28 127.77 1.19 4.52 16 14 S 2.80 108.84 6.09 -56.49 -0.34 108.50 16 15 O -1.01 -40.26 16.68 -128.00 -2.14 -42.40 16 16 O -1.02 -47.72 16.70 -128.00 -2.14 -49.86 16 17 N -1.12 -34.19 6.05 -187.49 -1.14 -35.32 16 18 C 0.13 3.18 6.07 86.38 0.52 3.71 16 19 C -0.12 -2.40 3.78 -10.26 -0.04 -2.44 16 20 C -0.14 -2.51 7.20 31.18 0.22 -2.29 16 21 C -0.11 -1.70 4.36 -10.21 -0.04 -1.74 16 22 C -0.14 -1.90 9.71 71.98 0.70 -1.20 16 23 C -0.13 -2.10 7.21 31.12 0.22 -1.87 16 24 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.11 7.79 -2.38 -0.02 2.09 16 30 H 0.08 2.65 7.02 -2.38 -0.02 2.63 16 31 H 0.42 11.70 8.65 -96.73 -0.84 10.87 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.87 7.48 -2.39 -0.02 1.85 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.55 7.75 -2.39 -0.02 1.53 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 0.76 7.96 -2.39 -0.02 0.74 16 39 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 Total: -1.00 -64.29 347.60 -0.76 -65.05 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.16 Total: 23.08 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.19 Total: -19.00 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -2.52 Total: -128.37 kcal Atomic # 8 Polarization: -87.98 SS G_CDS: -4.27 Total: -92.25 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 108.84 SS G_CDS: -0.34 Total: 108.50 kcal Total: -64.29 -0.76 -65.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598622647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.013 kcal (2) G-P(sol) polarization free energy of solvation -64.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds