Wall clock time and date at job start Fri Apr 10 2020 19:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38305 * 119.96393 * 2 1 4 4 C 1.38260 * 120.14164 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.06877 * 0.02562 * 4 3 2 6 6 C 1.38852 * 119.92943 * 359.97316 * 5 4 3 7 7 N 1.39927 * 120.06885 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00100 * 336.42519 * 7 6 5 9 9 O 1.21287 * 119.99981 * 355.01781 * 8 7 6 10 10 C 1.50700 * 119.99938 * 175.28378 * 8 7 6 11 11 H 1.08998 * 109.46716 * 59.73049 * 10 8 7 12 12 C 1.52998 * 109.47144 * 299.72683 * 10 8 7 13 13 N 1.46902 * 109.46795 * 179.72802 * 10 8 7 14 14 C 1.46900 * 110.99684 * 215.10138 * 13 10 8 15 15 H 1.09000 * 109.47589 * 36.32283 * 14 13 10 16 16 C 1.53003 * 109.47310 * 276.32471 * 14 13 10 17 17 C 1.50699 * 109.47285 * 156.32519 * 14 13 10 18 18 H 1.08003 * 119.99888 * 5.06493 * 17 14 13 19 19 C 1.37876 * 120.00281 * 185.06013 * 17 14 13 20 20 N 1.31515 * 120.00134 * 5.54417 * 19 17 14 21 21 Si 1.86798 * 120.00067 * 185.53791 * 19 17 14 22 22 H 1.48508 * 109.46978 * 95.00099 * 21 19 17 23 23 H 1.48505 * 109.47429 * 215.00001 * 21 19 17 24 24 H 1.48505 * 109.47462 * 335.00412 * 21 19 17 25 25 C 1.38094 * 119.96322 * 180.23859 * 2 1 3 26 26 C 1.50695 * 120.03913 * 0.03781 * 25 2 1 27 27 H 1.08993 * 109.47442 * 89.99500 * 1 2 3 28 28 H 1.09002 * 109.46981 * 209.99991 * 1 2 3 29 29 H 1.09001 * 109.47491 * 329.99363 * 1 2 3 30 30 H 1.07993 * 119.92800 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.96808 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.03671 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99711 * 156.42736 * 7 6 5 34 34 H 1.09005 * 109.46587 * 173.83608 * 12 10 8 35 35 H 1.09000 * 109.47325 * 293.83602 * 12 10 8 36 36 H 1.09004 * 109.47054 * 53.84106 * 12 10 8 37 37 H 1.00896 * 111.00024 * 339.05266 * 13 10 8 38 38 H 1.09001 * 109.46973 * 67.39913 * 16 14 13 39 39 H 1.09000 * 109.47507 * 187.39874 * 16 14 13 40 40 H 1.08996 * 109.47204 * 307.40455 * 16 14 13 41 41 H 0.96999 * 120.00236 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.47128 * 270.21788 * 26 25 2 43 43 H 1.08998 * 109.46995 * 30.21186 * 26 25 2 44 44 H 1.08990 * 109.47362 * 150.21565 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.2762 0.0092 0.0005 6 6 3.5856 -1.1955 0.0006 7 7 4.2875 -2.4059 0.0011 8 6 5.5512 -2.4524 -0.4652 9 8 6.0486 -1.4672 -0.9682 10 6 6.3440 -3.7303 -0.3672 11 1 5.8287 -4.5203 -0.9133 12 6 6.4828 -4.1328 1.1024 13 7 7.6781 -3.5244 -0.9466 14 6 8.1499 -4.7383 -1.6261 15 1 7.3085 -5.2342 -2.1101 16 6 8.7789 -5.6847 -0.6015 17 6 9.1779 -4.3661 -2.6633 18 1 9.5133 -3.3430 -2.7483 19 6 9.6902 -5.3316 -3.5038 20 7 9.2044 -6.5535 -3.4750 21 14 11.0740 -4.9043 -4.6835 22 1 12.3778 -5.2553 -4.0650 23 1 10.9029 -5.6687 -5.9451 24 1 11.0418 -3.4491 -4.9781 25 6 2.1967 -1.1964 -0.0050 26 6 1.4433 -2.5014 -0.0113 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1324 -0.0004 31 1 4.1169 2.1397 0.0001 32 1 5.3561 0.0131 0.0014 33 1 3.8645 -3.2117 0.3371 34 1 6.9598 -5.1108 1.1676 35 1 7.0923 -3.3956 1.6251 36 1 5.4952 -4.1790 1.5613 37 1 7.6819 -2.7342 -1.5740 38 1 8.0063 -6.0574 0.0711 39 1 9.2451 -6.5229 -1.1192 40 1 9.5332 -5.1479 -0.0262 41 1 9.5646 -7.2326 -4.0665 42 1 1.2576 -2.8188 1.0149 43 1 0.4928 -2.3697 -0.5283 44 1 2.0343 -3.2597 -0.5248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602862957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:07 Heat of formation + Delta-G solvation = -15.631908 kcal Electronic energy + Delta-G solvation = -23071.193743 eV Core-core repulsion = 19795.078594 eV Total energy + Delta-G solvation = -3276.115149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76642 -38.93939 -36.05415 -34.97087 -33.45081 -32.98866 -31.14899 -29.97921 -27.64525 -27.49015 -26.43726 -25.01501 -24.01598 -21.65396 -21.26318 -19.96054 -19.54678 -17.88396 -16.84436 -16.18705 -15.87724 -15.62851 -14.94659 -14.71650 -14.46594 -14.38090 -13.72103 -13.64094 -13.33981 -13.09231 -12.97691 -12.77917 -12.60012 -12.30600 -12.15790 -12.04036 -11.66788 -11.54149 -11.45249 -11.24233 -11.07817 -10.89113 -10.63284 -10.41806 -10.25545 -10.22311 -10.02492 -9.43863 -8.81477 -8.58597 -8.46870 -7.98954 -7.41543 -6.05893 -4.09225 1.25693 1.35178 2.74143 3.06242 3.31151 3.37725 3.42698 3.76511 4.41468 4.64175 4.73164 4.81759 4.93351 5.01618 5.08737 5.25019 5.28254 5.35308 5.40814 5.44201 5.51472 5.55610 5.60862 5.65823 5.72389 5.83306 5.98089 6.05993 6.17064 6.27695 6.43191 6.49453 6.54237 6.57922 6.79906 7.06060 7.07939 7.13295 7.33518 7.42761 7.79012 7.82777 8.16783 8.20434 8.32480 8.63738 9.01620 9.56485 11.02756 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.003275 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.747907 B = 8546.927803 C = 8883.686765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.160 3.840 7 N -0.672 5.672 8 C 0.511 3.489 9 O -0.508 6.508 10 C 0.069 3.931 11 H 0.071 0.929 12 C -0.136 4.136 13 N -0.671 5.671 14 C 0.210 3.790 15 H 0.008 0.992 16 C -0.123 4.123 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 C -0.125 4.125 26 C -0.116 4.116 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.350 0.650 38 H 0.011 0.989 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 8.702 9.800 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.162 4.162 4 C -0.119 4.119 5 C -0.157 4.157 6 C 0.065 3.935 7 N -0.317 5.317 8 C 0.299 3.701 9 O -0.381 6.381 10 C -0.045 4.045 11 H 0.089 0.911 12 C -0.194 4.194 13 N -0.308 5.308 14 C 0.103 3.897 15 H 0.025 0.975 16 C -0.181 4.181 17 C -0.557 4.557 18 H 0.080 0.920 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.128 4.128 26 C -0.172 4.172 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.246 0.754 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.172 0.828 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.780 9.027 9.910 21.477 hybrid contribution 0.042 -0.270 -1.340 1.367 sum -16.738 8.757 8.571 20.744 Atomic orbital electron populations 1.20794 0.91275 1.02645 1.02242 1.19491 0.95663 0.92083 0.99835 1.20935 0.94279 0.97195 1.03836 1.21033 0.93981 0.97784 0.99102 1.21526 1.02111 0.90546 1.01474 1.17690 0.90246 0.86111 0.99452 1.43712 1.14777 1.10165 1.63018 1.21531 0.80793 0.91788 0.75942 1.90619 1.69157 1.36636 1.41708 1.21635 0.92057 0.92132 0.98678 0.91149 1.21896 1.00591 1.03404 0.93513 1.60891 1.18056 1.09748 1.42089 1.19251 0.94563 0.85482 0.90388 0.97479 1.21773 0.98598 1.00187 0.97539 1.21253 1.23393 0.95293 1.15761 0.92006 1.24910 0.96963 0.95046 0.96996 1.69949 1.41552 1.02502 1.38977 0.86519 0.82436 0.78536 0.80169 1.20623 1.21325 1.19775 1.19413 0.91467 0.95675 1.06231 1.20745 1.00251 0.94057 1.02170 0.91243 0.91408 0.91623 0.86346 0.85912 0.83314 0.75376 0.90583 0.91716 0.93577 0.82814 0.96975 0.91351 0.94642 0.92939 0.91216 0.90938 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.18 36.01 0.33 -0.51 16 2 C -0.07 -0.75 5.88 -104.65 -0.62 -1.36 16 3 C -0.14 -1.56 9.70 -39.55 -0.38 -1.94 16 4 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 5 C -0.14 -2.00 8.74 -39.39 -0.34 -2.34 16 6 C 0.16 2.20 6.43 -83.69 -0.54 1.66 16 7 N -0.67 -8.89 4.80 -9.86 -0.05 -8.94 16 8 C 0.51 8.55 7.02 -10.98 -0.08 8.47 16 9 O -0.51 -10.08 12.54 5.55 0.07 -10.01 16 10 C 0.07 1.20 3.03 -68.86 -0.21 0.99 16 11 H 0.07 1.23 7.28 -51.93 -0.38 0.85 16 12 C -0.14 -1.98 9.22 37.16 0.34 -1.64 16 13 N -0.67 -14.67 6.12 -102.17 -0.63 -15.29 16 14 C 0.21 5.28 2.45 -68.86 -0.17 5.11 16 15 H 0.01 0.21 7.38 -51.93 -0.38 -0.18 16 16 C -0.12 -2.92 8.91 37.16 0.33 -2.58 16 17 C -0.52 -14.44 8.50 -34.44 -0.29 -14.73 16 18 H 0.06 1.74 7.69 -52.48 -0.40 1.33 16 19 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 20 N -0.89 -25.47 11.95 55.43 0.66 -24.81 16 21 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 C -0.13 -1.44 5.90 -104.44 -0.62 -2.05 16 26 C -0.12 -0.99 8.62 36.00 0.31 -0.68 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.44 6.72 -51.93 -0.35 0.09 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.15 2.47 5.68 -52.49 -0.30 2.17 16 33 H 0.41 4.20 6.89 -40.82 -0.28 3.92 16 34 H 0.08 1.16 5.80 -51.93 -0.30 0.86 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 37 H 0.35 8.16 6.68 -39.29 -0.26 7.90 16 38 H 0.01 0.24 6.00 -51.93 -0.31 -0.07 16 39 H 0.07 1.78 6.57 -51.93 -0.34 1.44 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.54 6.72 -51.93 -0.35 0.19 16 44 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 LS Contribution 348.05 15.07 5.25 5.25 Total: -1.00 -30.97 348.05 -8.64 -39.61 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.50 Total: 9.20 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -2.42 Total: -11.58 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.01 Total: -49.04 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.97 -8.64 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.975 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds