Wall clock time and date at job start Fri Apr 10 2020 19:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38305 * 119.96393 * 2 1 4 4 C 1.38260 * 120.14164 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.06877 * 0.02562 * 4 3 2 6 6 C 1.38852 * 119.92943 * 359.97316 * 5 4 3 7 7 N 1.39927 * 120.06885 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00100 * 336.42519 * 7 6 5 9 9 O 1.21287 * 119.99981 * 355.01781 * 8 7 6 10 10 C 1.50700 * 119.99938 * 175.28378 * 8 7 6 11 11 H 1.08998 * 109.46716 * 59.73049 * 10 8 7 12 12 C 1.52998 * 109.47144 * 299.72683 * 10 8 7 13 13 N 1.46902 * 109.46795 * 179.72802 * 10 8 7 14 14 C 1.46900 * 110.99684 * 215.10138 * 13 10 8 15 15 H 1.09000 * 109.47589 * 36.32283 * 14 13 10 16 16 C 1.53003 * 109.47310 * 276.32471 * 14 13 10 17 17 C 1.50699 * 109.47285 * 156.32519 * 14 13 10 18 18 H 1.08003 * 119.99888 * 5.06493 * 17 14 13 19 19 C 1.37876 * 120.00281 * 185.06013 * 17 14 13 20 20 N 1.31515 * 120.00134 * 5.54417 * 19 17 14 21 21 Si 1.86798 * 120.00067 * 185.53791 * 19 17 14 22 22 H 1.48508 * 109.46978 * 95.00099 * 21 19 17 23 23 H 1.48505 * 109.47429 * 215.00001 * 21 19 17 24 24 H 1.48505 * 109.47462 * 335.00412 * 21 19 17 25 25 C 1.38094 * 119.96322 * 180.23859 * 2 1 3 26 26 C 1.50695 * 120.03913 * 0.03781 * 25 2 1 27 27 H 1.08993 * 109.47442 * 89.99500 * 1 2 3 28 28 H 1.09002 * 109.46981 * 209.99991 * 1 2 3 29 29 H 1.09001 * 109.47491 * 329.99363 * 1 2 3 30 30 H 1.07993 * 119.92800 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.96808 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.03671 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99711 * 156.42736 * 7 6 5 34 34 H 1.09005 * 109.46587 * 173.83608 * 12 10 8 35 35 H 1.09000 * 109.47325 * 293.83602 * 12 10 8 36 36 H 1.09004 * 109.47054 * 53.84106 * 12 10 8 37 37 H 1.00896 * 111.00024 * 339.05266 * 13 10 8 38 38 H 1.09001 * 109.46973 * 67.39913 * 16 14 13 39 39 H 1.09000 * 109.47507 * 187.39874 * 16 14 13 40 40 H 1.08996 * 109.47204 * 307.40455 * 16 14 13 41 41 H 0.96999 * 120.00236 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.47128 * 270.21788 * 26 25 2 43 43 H 1.08998 * 109.46995 * 30.21186 * 26 25 2 44 44 H 1.08990 * 109.47362 * 150.21565 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.2762 0.0092 0.0005 6 6 3.5856 -1.1955 0.0006 7 7 4.2875 -2.4059 0.0011 8 6 5.5512 -2.4524 -0.4652 9 8 6.0486 -1.4672 -0.9682 10 6 6.3440 -3.7303 -0.3672 11 1 5.8287 -4.5203 -0.9133 12 6 6.4828 -4.1328 1.1024 13 7 7.6781 -3.5244 -0.9466 14 6 8.1499 -4.7383 -1.6261 15 1 7.3085 -5.2342 -2.1101 16 6 8.7789 -5.6847 -0.6015 17 6 9.1779 -4.3661 -2.6633 18 1 9.5133 -3.3430 -2.7483 19 6 9.6902 -5.3316 -3.5038 20 7 9.2044 -6.5535 -3.4750 21 14 11.0740 -4.9043 -4.6835 22 1 12.3778 -5.2553 -4.0650 23 1 10.9029 -5.6687 -5.9451 24 1 11.0418 -3.4491 -4.9781 25 6 2.1967 -1.1964 -0.0050 26 6 1.4433 -2.5014 -0.0113 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1324 -0.0004 31 1 4.1169 2.1397 0.0001 32 1 5.3561 0.0131 0.0014 33 1 3.8645 -3.2117 0.3371 34 1 6.9598 -5.1108 1.1676 35 1 7.0923 -3.3956 1.6251 36 1 5.4952 -4.1790 1.5613 37 1 7.6819 -2.7342 -1.5740 38 1 8.0063 -6.0574 0.0711 39 1 9.2451 -6.5229 -1.1192 40 1 9.5332 -5.1479 -0.0262 41 1 9.5646 -7.2326 -4.0665 42 1 1.2576 -2.8188 1.0149 43 1 0.4928 -2.3697 -0.5283 44 1 2.0343 -3.2597 -0.5248 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:06 Heat of formation + Delta-G solvation = -35.140159 kcal Electronic energy + Delta-G solvation = -23072.039684 eV Core-core repulsion = 19795.078594 eV Total energy + Delta-G solvation = -3276.961090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91996 -40.03357 -37.73458 -36.14185 -34.91514 -34.24131 -32.54810 -31.27335 -29.30808 -28.32960 -27.22637 -27.10024 -25.26778 -22.90572 -22.18576 -21.71426 -20.80591 -19.30408 -18.19571 -17.78035 -16.98058 -16.77280 -16.60211 -16.29977 -15.65619 -15.39156 -15.19304 -14.84851 -14.67603 -14.40785 -13.91456 -13.68905 -13.61700 -13.43839 -13.25995 -13.18061 -12.99477 -12.93417 -12.81394 -12.75832 -12.44357 -12.35344 -12.22412 -12.04497 -11.97714 -11.89654 -11.44466 -10.99709 -10.60565 -10.57790 -9.46557 -9.21880 -8.98385 -8.19112 -6.29512 0.28060 0.42641 1.39116 1.40339 1.49094 1.51156 1.90512 2.40076 2.82805 3.12101 3.49279 3.55703 3.89878 3.92937 4.13567 4.16607 4.26999 4.29757 4.47105 4.51331 4.72276 4.73822 4.79073 4.79385 4.87700 4.91398 4.91764 4.94644 5.09395 5.14985 5.18397 5.25036 5.31700 5.33747 5.49447 5.49596 5.60374 5.64150 5.69171 5.83625 6.13065 6.15477 6.29673 6.39366 6.71146 6.91575 7.00049 7.40115 8.88854 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.003275 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.747907 B = 8546.927803 C = 8883.686765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.165 4.165 6 C 0.134 3.866 7 N -0.653 5.653 8 C 0.513 3.487 9 O -0.546 6.546 10 C 0.066 3.934 11 H 0.073 0.927 12 C -0.128 4.128 13 N -0.675 5.675 14 C 0.217 3.783 15 H -0.020 1.020 16 C -0.110 4.110 17 C -0.543 4.543 18 H 0.050 0.950 19 C 0.019 3.981 20 N -0.914 5.914 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.273 1.273 25 C -0.125 4.125 26 C -0.116 4.116 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.425 0.575 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.337 0.663 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.927 8.911 10.620 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.074 4.074 3 C -0.160 4.160 4 C -0.130 4.130 5 C -0.185 4.185 6 C 0.039 3.961 7 N -0.298 5.298 8 C 0.301 3.699 9 O -0.423 6.423 10 C -0.047 4.047 11 H 0.090 0.910 12 C -0.186 4.186 13 N -0.309 5.309 14 C 0.109 3.891 15 H -0.003 1.003 16 C -0.168 4.168 17 C -0.581 4.581 18 H 0.068 0.932 19 C -0.181 4.181 20 N -0.553 5.553 21 Si 0.783 3.217 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.127 4.127 26 C -0.173 4.173 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.158 0.842 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.169 9.221 10.768 23.842 hybrid contribution 0.633 -0.262 -1.562 1.706 sum -18.536 8.959 9.205 22.552 Atomic orbital electron populations 1.20868 0.88589 1.04135 1.03175 1.19975 0.97614 0.91549 0.98293 1.21303 0.93654 0.98720 1.02312 1.21232 0.95043 0.97473 0.99239 1.21448 1.01037 0.92263 1.03741 1.17880 0.91347 0.85563 1.01269 1.43403 1.13468 1.10982 1.61941 1.21325 0.81779 0.90848 0.75927 1.90618 1.70271 1.37681 1.43734 1.21732 0.90185 0.92697 1.00107 0.90981 1.21845 1.02877 1.02542 0.91301 1.60843 1.21232 1.07914 1.40939 1.19060 0.93118 0.86591 0.90368 1.00290 1.21588 0.99104 0.98843 0.97277 1.21559 1.24480 0.94942 1.17140 0.93187 1.25640 0.98995 0.94960 0.98503 1.70040 1.42474 1.03178 1.39648 0.85562 0.79715 0.78163 0.78310 1.19845 1.20553 1.19816 1.19778 0.90539 0.97580 1.04848 1.20843 1.00448 0.92317 1.03668 0.90404 0.90046 0.90145 0.83643 0.84772 0.86232 0.73595 0.91062 0.92485 0.89525 0.84239 0.94091 0.93891 0.94778 0.92682 0.89188 0.89352 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.18 71.24 0.65 -0.58 16 2 C -0.07 -1.37 5.88 -19.88 -0.12 -1.49 16 3 C -0.14 -2.78 9.70 22.29 0.22 -2.56 16 4 C -0.11 -2.71 10.04 22.25 0.22 -2.49 16 5 C -0.16 -4.97 8.74 22.39 0.20 -4.78 16 6 C 0.13 3.63 6.43 38.15 0.25 3.87 16 7 N -0.65 -16.96 4.80 -303.50 -1.46 -18.41 16 8 C 0.51 17.53 7.02 87.66 0.61 18.14 16 9 O -0.55 -22.87 12.54 -3.05 -0.04 -22.91 16 10 C 0.07 2.33 3.03 44.17 0.13 2.46 16 11 H 0.07 2.53 7.28 -2.39 -0.02 2.51 16 12 C -0.13 -3.56 9.22 71.98 0.66 -2.90 16 13 N -0.67 -30.38 6.12 -477.16 -2.92 -33.30 16 14 C 0.22 11.17 2.45 44.17 0.11 11.28 16 15 H -0.02 -1.15 7.38 -2.39 -0.02 -1.16 16 16 C -0.11 -5.27 8.91 71.98 0.64 -4.62 16 17 C -0.54 -31.07 8.50 25.60 0.22 -30.86 16 18 H 0.05 2.91 7.69 -2.91 -0.02 2.89 16 19 C 0.02 1.06 5.20 84.65 0.44 1.50 16 20 N -0.91 -52.96 11.95 21.45 0.26 -52.70 16 21 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 25 C -0.12 -2.62 5.90 -19.74 -0.12 -2.74 16 26 C -0.12 -1.63 8.62 71.23 0.61 -1.02 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.70 6.72 -2.39 -0.02 0.69 16 29 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.12 4.29 5.68 -2.91 -0.02 4.27 16 33 H 0.42 7.99 6.89 -92.71 -0.64 7.35 16 34 H 0.07 2.06 5.80 -2.38 -0.01 2.05 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.70 7.52 -2.39 -0.02 1.68 16 37 H 0.34 16.54 6.68 -89.70 -0.60 15.94 16 38 H 0.04 1.67 6.00 -2.39 -0.01 1.66 16 39 H 0.04 2.26 6.57 -2.39 -0.02 2.24 16 40 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.09 0.98 6.72 -2.39 -0.02 0.97 16 44 H 0.06 0.91 6.97 -2.39 -0.02 0.89 16 Total: -1.00 -69.36 348.05 2.39 -66.98 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.22 Total: 30.31 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.74 Total: -16.77 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.12 Total: -104.42 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.91 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -69.36 2.39 -66.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.836 kcal (2) G-P(sol) polarization free energy of solvation -69.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds