Wall clock time and date at job start Fri Apr 10 2020 19:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38255 * 120.00118 * 2 1 4 4 C 1.38211 * 119.99943 * 180.23113 * 3 2 1 5 5 C 1.38257 * 120.00051 * 359.81550 * 4 3 2 6 6 C 1.38204 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00297 * 179.79650 * 2 1 3 8 8 C 1.50704 * 119.99588 * 359.97438 * 7 2 1 9 9 N 1.46495 * 109.47182 * 185.86728 * 8 7 2 10 10 C 1.46503 * 120.00186 * 265.95138 * 9 8 7 11 11 C 1.34779 * 120.00100 * 85.95021 * 9 8 7 12 12 O 1.21275 * 119.99711 * 359.97438 * 11 9 8 13 13 C 1.50697 * 120.00063 * 180.02562 * 11 9 8 14 14 N 1.46907 * 109.47111 * 179.97438 * 13 11 9 15 15 C 1.46896 * 111.00152 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46959 * 324.99981 * 15 14 13 17 17 C 1.53005 * 109.47006 * 85.00100 * 15 14 13 18 18 C 1.50699 * 109.47117 * 205.00075 * 15 14 13 19 19 H 1.08002 * 119.99881 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00236 * 180.02562 * 18 15 14 21 21 N 1.31523 * 119.99653 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00124 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46984 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46881 * 299.99484 * 22 20 18 25 25 H 1.48497 * 109.47305 * 59.99800 * 22 20 18 26 26 H 1.08993 * 109.47174 * 264.58376 * 1 2 3 27 27 H 1.08996 * 109.47237 * 24.58855 * 1 2 3 28 28 H 1.09005 * 109.47182 * 144.58811 * 1 2 3 29 29 H 1.08000 * 120.00026 * 0.06853 * 3 2 1 30 30 H 1.08001 * 119.99784 * 179.83945 * 4 3 2 31 31 H 1.08003 * 119.99817 * 179.97438 * 5 4 3 32 32 H 1.08010 * 120.00328 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46806 * 65.87147 * 8 7 2 34 34 H 1.08996 * 109.47221 * 305.86853 * 8 7 2 35 35 H 1.09001 * 109.47083 * 273.78696 * 10 9 8 36 36 H 1.09001 * 109.47032 * 33.79030 * 10 9 8 37 37 H 1.09008 * 109.47138 * 153.78704 * 10 9 8 38 38 H 1.08994 * 109.47566 * 60.00004 * 13 11 9 39 39 H 1.09000 * 109.47317 * 299.99299 * 13 11 9 40 40 H 1.00906 * 110.99481 * 56.04071 * 14 13 11 41 41 H 1.08998 * 109.46616 * 300.00116 * 17 15 14 42 42 H 1.08996 * 109.46701 * 60.00370 * 17 15 14 43 43 H 1.09003 * 109.46948 * 180.02562 * 17 15 14 44 44 H 0.96993 * 119.99472 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2716 -0.0001 -0.0058 6 6 3.5806 -1.1969 -0.0014 7 6 2.1981 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0095 9 7 2.3903 -3.6114 0.1545 10 6 2.9068 -4.2939 -1.0345 11 6 2.7853 -4.0042 1.3818 12 8 2.3581 -3.4390 2.3660 13 6 3.7586 -5.1450 1.5309 14 7 4.0275 -5.3761 2.9566 15 6 4.9741 -6.4841 3.1409 16 1 4.8017 -7.2405 2.3752 17 6 6.4056 -5.9568 3.0237 18 6 4.7736 -7.0945 4.5041 19 1 4.0182 -6.6991 5.1670 20 6 5.5545 -8.1578 4.9050 21 7 6.4741 -8.6396 4.0975 22 14 5.3055 -8.9148 6.5944 23 1 6.2634 -10.0341 6.7813 24 1 5.5394 -7.8844 7.6379 25 1 3.9164 -9.4273 6.7074 26 1 -0.3633 -0.0970 1.0230 27 1 -0.3633 0.9344 -0.4276 28 1 -0.3634 -0.8376 -0.5955 29 1 1.6583 2.1326 0.0011 30 1 4.1204 2.1326 -0.0074 31 1 5.3517 -0.0001 -0.0100 32 1 4.1206 -2.1324 -0.0026 33 1 0.8987 -2.6102 -0.9278 34 1 0.7418 -2.5125 0.8425 35 1 2.2158 -5.0838 -1.3290 36 1 3.0081 -3.5772 -1.8495 37 1 3.8809 -4.7285 -0.8097 38 1 4.6897 -4.8972 1.0215 39 1 3.3322 -6.0464 1.0906 40 1 3.1713 -5.5441 3.4634 41 1 6.5505 -5.5153 2.0378 42 1 6.5780 -5.2005 3.7895 43 1 7.1080 -6.7791 3.1601 44 1 7.0232 -9.3878 4.3794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:29 Heat of formation + Delta-G solvation = -6.082232 kcal Electronic energy + Delta-G solvation = -23026.126823 eV Core-core repulsion = 19750.425779 eV Total energy + Delta-G solvation = -3275.701044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23613 -38.92238 -35.85925 -35.30030 -33.17075 -32.51631 -31.47807 -29.20838 -27.80101 -26.75969 -26.35951 -25.27336 -24.22776 -21.98702 -20.97124 -19.80997 -18.98351 -17.09467 -16.80136 -16.43419 -15.93347 -15.37003 -15.13677 -14.71420 -14.64543 -14.19258 -14.02091 -13.40055 -13.27240 -13.12820 -12.91584 -12.77219 -12.68044 -12.46760 -12.42949 -12.29485 -11.85235 -11.72339 -11.24712 -11.07910 -11.06036 -10.89969 -10.75921 -10.36453 -10.14046 -10.04853 -9.38904 -8.84847 -8.81579 -8.68714 -8.59694 -8.46604 -7.28546 -6.02912 -4.08758 1.29872 1.37170 2.93754 3.03967 3.33293 3.36884 3.41174 3.70995 4.41416 4.67679 4.75073 4.78629 4.86785 5.01394 5.07027 5.14948 5.24425 5.27625 5.34262 5.39445 5.46916 5.48555 5.56059 5.61381 5.64134 5.70631 5.87053 5.90094 6.00290 6.05013 6.34315 6.44962 6.49969 6.70693 6.83115 6.97727 7.10427 7.18318 7.38037 7.50819 7.79198 7.87579 8.25996 8.37255 8.46218 8.66282 9.01288 9.57144 11.03630 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.003159 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.945637 B = 8862.587467 C = 8963.094502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.099 4.099 7 C -0.096 4.096 8 C 0.159 3.841 9 N -0.627 5.627 10 C 0.077 3.923 11 C 0.513 3.487 12 O -0.516 6.516 13 C 0.046 3.954 14 N -0.673 5.673 15 C 0.213 3.787 16 H 0.002 0.998 17 C -0.125 4.125 18 C -0.518 4.518 19 H 0.061 0.939 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.340 0.660 41 H 0.002 0.998 42 H 0.033 0.967 43 H 0.082 0.918 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 14.723 -14.800 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.097 4.097 8 C 0.036 3.964 9 N -0.363 5.363 10 C -0.067 4.067 11 C 0.302 3.698 12 O -0.389 6.389 13 C -0.087 4.087 14 N -0.306 5.306 15 C 0.106 3.894 16 H 0.019 0.981 17 C -0.183 4.183 18 C -0.557 4.557 19 H 0.079 0.921 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.203 1.203 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.159 0.841 41 H 0.021 0.979 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.454 15.330 -14.211 22.548 hybrid contribution -0.416 -1.151 0.545 1.340 sum -8.870 14.179 -13.666 21.598 Atomic orbital electron populations 1.20803 0.91318 1.02520 1.02568 1.19645 0.95889 0.92473 1.00504 1.20954 0.94266 0.97166 1.01580 1.21098 0.94324 0.97944 1.00724 1.21144 0.99904 0.92535 1.00537 1.21011 0.93673 0.98264 0.98753 1.20151 0.94353 0.94692 1.00505 1.20244 0.90978 0.82587 1.02607 1.47920 1.47008 1.34594 1.06758 1.21844 1.00037 0.97296 0.87486 1.21130 0.81791 0.84902 0.82024 1.90679 1.55267 1.55626 1.37313 1.21840 0.97318 0.94338 0.95186 1.60522 1.17609 1.47967 1.04472 1.19144 0.88789 0.85327 0.96164 0.98077 1.21733 0.99977 1.00521 0.96094 1.21229 1.19226 1.14670 1.00559 0.92089 1.24908 0.94982 0.96589 0.97471 1.69886 1.21665 1.25490 1.36009 0.86552 0.77869 0.78652 0.84300 1.21309 1.20122 1.20291 0.90912 0.91671 0.91541 0.86294 0.86339 0.86210 0.86073 0.89486 0.88916 0.92468 0.91344 0.90369 0.89058 0.93404 0.84104 0.97865 0.94792 0.89955 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.41 36.00 0.34 -0.62 16 2 C -0.08 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.29 9.68 -39.58 -0.38 -1.67 16 4 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 5 C -0.12 -1.49 10.05 -39.59 -0.40 -1.88 16 6 C -0.10 -1.31 9.14 -39.59 -0.36 -1.67 16 7 C -0.10 -1.19 5.85 -104.62 -0.61 -1.81 16 8 C 0.16 1.83 4.49 -5.19 -0.02 1.81 16 9 N -0.63 -7.98 1.72 -182.95 -0.31 -8.30 16 10 C 0.08 0.71 9.77 59.85 0.58 1.29 16 11 C 0.51 8.75 7.06 -10.99 -0.08 8.67 16 12 O -0.52 -10.80 15.85 5.56 0.09 -10.71 16 13 C 0.05 0.83 4.46 -4.97 -0.02 0.81 16 14 N -0.67 -15.24 5.93 -109.22 -0.65 -15.89 16 15 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 16 H 0.00 0.04 7.80 -51.93 -0.40 -0.36 16 17 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 18 C -0.52 -14.51 8.59 -34.44 -0.30 -14.80 16 19 H 0.06 1.71 7.62 -52.49 -0.40 1.31 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -25.43 11.32 55.43 0.63 -24.81 16 22 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 28 H 0.07 0.48 7.03 -51.93 -0.37 0.11 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.12 1.65 6.23 -52.48 -0.33 1.32 16 33 H 0.09 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.08 0.73 6.30 -51.92 -0.33 0.40 16 38 H 0.09 1.55 6.70 -51.93 -0.35 1.20 16 39 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 40 H 0.34 7.93 7.92 -39.29 -0.31 7.62 16 41 H 0.00 0.05 7.45 -51.93 -0.39 -0.33 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -32.38 356.49 -8.99 -41.36 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.90 Total: 5.50 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.20 Total: -9.06 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.33 Total: -48.99 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.38 -8.99 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.281 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds