Wall clock time and date at job start Fri Apr 10 2020 19:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38255 * 120.00118 * 2 1 4 4 C 1.38211 * 119.99943 * 180.23113 * 3 2 1 5 5 C 1.38257 * 120.00051 * 359.81550 * 4 3 2 6 6 C 1.38204 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00297 * 179.79650 * 2 1 3 8 8 C 1.50704 * 119.99588 * 359.97438 * 7 2 1 9 9 N 1.46495 * 109.47182 * 185.86728 * 8 7 2 10 10 C 1.46503 * 120.00186 * 265.95138 * 9 8 7 11 11 C 1.34779 * 120.00100 * 85.95021 * 9 8 7 12 12 O 1.21275 * 119.99711 * 359.97438 * 11 9 8 13 13 C 1.50697 * 120.00063 * 180.02562 * 11 9 8 14 14 N 1.46907 * 109.47111 * 179.97438 * 13 11 9 15 15 C 1.46896 * 111.00152 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46959 * 324.99981 * 15 14 13 17 17 C 1.53005 * 109.47006 * 85.00100 * 15 14 13 18 18 C 1.50699 * 109.47117 * 205.00075 * 15 14 13 19 19 H 1.08002 * 119.99881 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00236 * 180.02562 * 18 15 14 21 21 N 1.31523 * 119.99653 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00124 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46984 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46881 * 299.99484 * 22 20 18 25 25 H 1.48497 * 109.47305 * 59.99800 * 22 20 18 26 26 H 1.08993 * 109.47174 * 264.58376 * 1 2 3 27 27 H 1.08996 * 109.47237 * 24.58855 * 1 2 3 28 28 H 1.09005 * 109.47182 * 144.58811 * 1 2 3 29 29 H 1.08000 * 120.00026 * 0.06853 * 3 2 1 30 30 H 1.08001 * 119.99784 * 179.83945 * 4 3 2 31 31 H 1.08003 * 119.99817 * 179.97438 * 5 4 3 32 32 H 1.08010 * 120.00328 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46806 * 65.87147 * 8 7 2 34 34 H 1.08996 * 109.47221 * 305.86853 * 8 7 2 35 35 H 1.09001 * 109.47083 * 273.78696 * 10 9 8 36 36 H 1.09001 * 109.47032 * 33.79030 * 10 9 8 37 37 H 1.09008 * 109.47138 * 153.78704 * 10 9 8 38 38 H 1.08994 * 109.47566 * 60.00004 * 13 11 9 39 39 H 1.09000 * 109.47317 * 299.99299 * 13 11 9 40 40 H 1.00906 * 110.99481 * 56.04071 * 14 13 11 41 41 H 1.08998 * 109.46616 * 300.00116 * 17 15 14 42 42 H 1.08996 * 109.46701 * 60.00370 * 17 15 14 43 43 H 1.09003 * 109.46948 * 180.02562 * 17 15 14 44 44 H 0.96993 * 119.99472 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2716 -0.0001 -0.0058 6 6 3.5806 -1.1969 -0.0014 7 6 2.1981 -1.1970 0.0043 8 6 1.4446 -2.5021 0.0095 9 7 2.3903 -3.6114 0.1545 10 6 2.9068 -4.2939 -1.0345 11 6 2.7853 -4.0042 1.3818 12 8 2.3581 -3.4390 2.3660 13 6 3.7586 -5.1450 1.5309 14 7 4.0275 -5.3761 2.9566 15 6 4.9741 -6.4841 3.1409 16 1 4.8017 -7.2405 2.3752 17 6 6.4056 -5.9568 3.0237 18 6 4.7736 -7.0945 4.5041 19 1 4.0182 -6.6991 5.1670 20 6 5.5545 -8.1578 4.9050 21 7 6.4741 -8.6396 4.0975 22 14 5.3055 -8.9148 6.5944 23 1 6.2634 -10.0341 6.7813 24 1 5.5394 -7.8844 7.6379 25 1 3.9164 -9.4273 6.7074 26 1 -0.3633 -0.0970 1.0230 27 1 -0.3633 0.9344 -0.4276 28 1 -0.3634 -0.8376 -0.5955 29 1 1.6583 2.1326 0.0011 30 1 4.1204 2.1326 -0.0074 31 1 5.3517 -0.0001 -0.0100 32 1 4.1206 -2.1324 -0.0026 33 1 0.8987 -2.6102 -0.9278 34 1 0.7418 -2.5125 0.8425 35 1 2.2158 -5.0838 -1.3290 36 1 3.0081 -3.5772 -1.8495 37 1 3.8809 -4.7285 -0.8097 38 1 4.6897 -4.8972 1.0215 39 1 3.3322 -6.0464 1.0906 40 1 3.1713 -5.5441 3.4634 41 1 6.5505 -5.5153 2.0378 42 1 6.5780 -5.2005 3.7895 43 1 7.1080 -6.7791 3.1601 44 1 7.0232 -9.3878 4.3794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:28 Heat of formation + Delta-G solvation = -25.221951 kcal Electronic energy + Delta-G solvation = -23026.956784 eV Core-core repulsion = 19750.425779 eV Total energy + Delta-G solvation = -3276.531004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32508 -39.98177 -37.54304 -36.62017 -34.52857 -33.92934 -32.46573 -30.95142 -28.77424 -27.75726 -27.53601 -27.16096 -25.61731 -22.93383 -21.94461 -21.64840 -20.22814 -18.73892 -17.90144 -17.70119 -17.29420 -16.75398 -16.43342 -16.12999 -15.69362 -15.44723 -15.06599 -15.02510 -14.64296 -14.21568 -14.12551 -13.93113 -13.65433 -13.52468 -13.44036 -13.24333 -13.09212 -12.93139 -12.82207 -12.73881 -12.65530 -12.32516 -12.20604 -12.01530 -11.90334 -11.90049 -10.97716 -10.76278 -10.56507 -9.76924 -9.66675 -9.45345 -9.09535 -8.15166 -6.28573 0.43791 0.49359 1.41811 1.44053 1.51655 1.61763 1.95094 2.41663 2.84142 3.13390 3.54744 3.74219 3.83914 3.97072 4.06522 4.18633 4.25960 4.34835 4.39312 4.43264 4.48436 4.51301 4.67828 4.73259 4.81439 4.84530 4.86660 4.92845 4.96180 5.05716 5.16816 5.17208 5.28451 5.40271 5.45016 5.61250 5.63263 5.64203 5.78774 5.82442 6.14000 6.19624 6.28055 6.42171 6.71584 6.91915 7.21077 7.41378 8.90357 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.003159 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.945637 B = 8862.587467 C = 8963.094502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.127 4.127 4 C -0.128 4.128 5 C -0.140 4.140 6 C -0.122 4.122 7 C -0.112 4.112 8 C 0.159 3.841 9 N -0.614 5.614 10 C 0.069 3.931 11 C 0.515 3.485 12 O -0.564 6.564 13 C 0.047 3.953 14 N -0.682 5.682 15 C 0.219 3.781 16 H -0.017 1.017 17 C -0.114 4.114 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.018 3.982 21 N -0.914 5.914 22 Si 0.961 3.039 23 H -0.279 1.279 24 H -0.275 1.275 25 H -0.271 1.271 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.334 0.666 41 H 0.027 0.973 42 H 0.021 0.979 43 H 0.062 0.938 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 15.528 -15.986 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.140 4.140 7 C -0.113 4.113 8 C 0.037 3.963 9 N -0.347 5.347 10 C -0.072 4.072 11 C 0.304 3.696 12 O -0.441 6.441 13 C -0.085 4.085 14 N -0.314 5.314 15 C 0.111 3.889 16 H 0.000 1.000 17 C -0.172 4.172 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.182 4.182 21 N -0.553 5.553 22 Si 0.786 3.214 23 H -0.204 1.204 24 H -0.201 1.201 25 H -0.196 1.196 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.415 16.142 -15.463 24.256 hybrid contribution -0.127 -1.336 0.807 1.566 sum -9.542 14.806 -14.657 22.915 Atomic orbital electron populations 1.20851 0.89393 1.04143 1.02663 1.20013 0.97442 0.92188 0.99700 1.21338 0.94408 0.98113 1.00623 1.21424 0.94842 0.98402 0.99923 1.21360 1.00579 0.92840 1.01024 1.21075 0.94298 0.98324 1.00315 1.20304 0.94243 0.95557 1.01204 1.20395 0.90407 0.81832 1.03682 1.47871 1.46161 1.34395 1.06310 1.22120 1.00351 0.98258 0.86520 1.20875 0.81447 0.84387 0.82888 1.90658 1.57132 1.57154 1.39192 1.21873 0.98512 0.95564 0.92552 1.60403 1.17032 1.46450 1.07481 1.18951 0.89706 0.85626 0.94620 0.99963 1.21563 0.99213 0.99358 0.97087 1.21538 1.19474 1.15504 1.01716 0.92924 1.25662 0.94611 0.96890 1.00997 1.69988 1.22043 1.25734 1.37510 0.85571 0.78121 0.77856 0.79833 1.20441 1.20059 1.19603 0.91407 0.89788 0.90314 0.83813 0.84125 0.85444 0.87188 0.85957 0.90472 0.90492 0.89071 0.90500 0.87988 0.91934 0.84886 0.95361 0.95993 0.91974 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.41 71.24 0.67 -0.98 16 2 C -0.09 -1.92 5.88 -19.87 -0.12 -2.04 16 3 C -0.13 -2.44 9.68 22.27 0.22 -2.23 16 4 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 5 C -0.14 -3.31 10.05 22.27 0.22 -3.09 16 6 C -0.12 -3.19 9.14 22.26 0.20 -2.99 16 7 C -0.11 -2.68 5.85 -19.86 -0.12 -2.80 16 8 C 0.16 3.45 4.49 85.64 0.38 3.84 16 9 N -0.61 -14.93 1.72 -851.12 -1.46 -16.40 16 10 C 0.07 1.12 9.77 127.77 1.25 2.37 16 11 C 0.52 17.57 7.06 87.66 0.62 18.19 16 12 O -0.56 -24.15 15.85 -3.01 -0.05 -24.20 16 13 C 0.05 1.69 4.46 85.55 0.38 2.08 16 14 N -0.68 -31.41 5.93 -499.46 -2.96 -34.37 16 15 C 0.22 11.37 2.60 44.17 0.11 11.49 16 16 H -0.02 -0.94 7.80 -2.39 -0.02 -0.96 16 17 C -0.11 -5.75 9.19 71.98 0.66 -5.08 16 18 C -0.54 -30.94 8.59 25.60 0.22 -30.72 16 19 H 0.05 3.01 7.62 -2.91 -0.02 2.99 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.91 -52.41 11.32 21.45 0.24 -52.17 16 22 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 28 H 0.08 0.93 7.03 -2.38 -0.02 0.91 16 29 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.11 3.00 6.23 -2.91 -0.02 2.98 16 33 H 0.12 1.75 7.70 -2.38 -0.02 1.73 16 34 H 0.08 1.95 7.40 -2.39 -0.02 1.94 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.08 1.29 6.30 -2.38 -0.02 1.28 16 38 H 0.10 3.39 6.70 -2.39 -0.02 3.38 16 39 H 0.06 2.07 8.02 -2.39 -0.02 2.05 16 40 H 0.33 16.00 7.92 -89.69 -0.71 15.29 16 41 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 44 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -70.68 356.49 3.46 -67.22 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.28 Total: 26.49 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.38 Total: -12.87 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -4.18 Total: -102.94 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.68 3.46 -67.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.997 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds