Wall clock time and date at job start Fri Apr 10 2020 19:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 119.99999 * 2 1 4 4 C 1.38212 * 120.00301 * 180.22976 * 3 2 1 5 5 C 1.38258 * 119.99529 * 359.81229 * 4 3 2 6 6 C 1.38215 * 120.00286 * 359.97163 * 5 4 3 7 7 C 1.38213 * 120.00050 * 179.78227 * 2 1 3 8 8 C 1.50706 * 119.99781 * 0.02562 * 7 2 1 9 9 C 1.52997 * 109.47238 * 84.72525 * 8 7 2 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00447 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99877 * 180.02562 * 11 10 9 14 14 N 1.46909 * 109.46861 * 180.02562 * 13 11 10 15 15 C 1.46893 * 111.00138 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.47044 * 34.99378 * 15 14 13 17 17 C 1.52999 * 109.47140 * 274.99880 * 15 14 13 18 18 C 1.50695 * 109.47319 * 154.99716 * 15 14 13 19 19 H 1.07999 * 119.99845 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00172 * 179.97438 * 18 15 14 21 21 N 1.31519 * 120.00060 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00174 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47045 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47076 * 120.00121 * 22 20 18 25 25 H 1.48489 * 109.47424 * 240.00059 * 22 20 18 26 26 H 1.09004 * 109.47780 * 270.21458 * 1 2 3 27 27 H 1.08999 * 109.47285 * 30.21654 * 1 2 3 28 28 H 1.09003 * 109.47101 * 150.21278 * 1 2 3 29 29 H 1.08001 * 120.00233 * 0.05876 * 3 2 1 30 30 H 1.07992 * 120.00129 * 179.82816 * 4 3 2 31 31 H 1.08003 * 120.00068 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.99988 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46953 * 204.72137 * 8 7 2 34 34 H 1.09000 * 109.47318 * 324.71735 * 8 7 2 35 35 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 36 36 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 37 37 H 0.97006 * 119.99755 * 359.97438 * 10 9 8 38 38 H 1.09001 * 109.47332 * 299.99611 * 13 11 10 39 39 H 1.08996 * 109.47524 * 60.00287 * 13 11 10 40 40 H 1.00904 * 110.99729 * 303.95200 * 14 13 11 41 41 H 1.08999 * 109.47146 * 300.00157 * 17 15 14 42 42 H 1.09004 * 109.47182 * 59.99867 * 17 15 14 43 43 H 1.09004 * 109.47532 * 179.97438 * 17 15 14 44 44 H 0.96999 * 119.99699 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1969 0.0045 8 6 1.4445 -2.5021 0.0089 9 6 1.0752 -2.8826 -1.4262 10 7 0.3432 -4.1516 -1.4220 11 6 -0.0866 -4.6855 -2.5825 12 8 0.1322 -4.1152 -3.6302 13 6 -0.8401 -5.9906 -2.5780 14 7 -1.1946 -6.3560 -3.9560 15 6 -1.9324 -7.6258 -3.9907 16 1 -2.5678 -7.7010 -3.1082 17 6 -0.9414 -8.7913 -4.0064 18 6 -2.7871 -7.6764 -5.2308 19 1 -2.7823 -6.8484 -5.9242 20 6 -3.5743 -8.7803 -5.4809 21 7 -3.5798 -9.7889 -4.6369 22 14 -4.6332 -8.8435 -7.0186 23 1 -4.4484 -7.5933 -7.7985 24 1 -4.2321 -10.0079 -7.8483 25 1 -6.0603 -8.9796 -6.6316 26 1 -0.3635 0.0038 1.0277 27 1 -0.3634 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 1.6583 2.1326 0.0010 30 1 4.1203 2.1326 -0.0076 31 1 5.3516 0.0000 -0.0090 32 1 4.1206 -2.1322 -0.0014 33 1 2.0711 -3.2819 0.4417 34 1 0.5361 -2.3952 0.6018 35 1 0.4486 -2.1027 -1.8590 36 1 1.9837 -2.9895 -2.0190 37 1 0.1679 -4.6075 -0.5840 38 1 -0.2134 -6.7705 -2.1455 39 1 -1.7484 -5.8838 -1.9850 40 1 -1.7216 -5.6197 -4.4012 41 1 -0.3059 -8.7160 -4.8888 42 1 -0.3232 -8.7546 -3.1093 43 1 -1.4888 -9.7335 -4.0316 44 1 -4.1334 -10.5657 -4.8131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:32 Heat of formation + Delta-G solvation = -25.462935 kcal Electronic energy + Delta-G solvation = -21955.492723 eV Core-core repulsion = 18678.951269 eV Total energy + Delta-G solvation = -3276.541454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02762 -39.22024 -35.89311 -35.23878 -33.29364 -32.53166 -32.31677 -29.55806 -28.52699 -27.14713 -25.66592 -24.86155 -23.23399 -22.18118 -20.95273 -20.19436 -19.69734 -17.22330 -16.65109 -16.28750 -16.01759 -15.86266 -15.33384 -15.08772 -14.71269 -14.26752 -13.98069 -13.67870 -13.45084 -13.36294 -13.10498 -12.97027 -12.61138 -12.47289 -12.44647 -11.93177 -11.88049 -11.56275 -11.26111 -11.20347 -11.13230 -10.92609 -10.71771 -10.34638 -10.13270 -10.05305 -9.42919 -9.08101 -8.96739 -8.85211 -8.81019 -8.47309 -7.27955 -6.02822 -4.08448 1.04487 1.10937 3.00388 3.24428 3.30357 3.38189 3.44019 3.50266 4.41885 4.48389 4.50872 4.67493 4.72915 4.81208 4.87935 5.02780 5.21862 5.25117 5.27931 5.29223 5.34582 5.40493 5.42929 5.55548 5.66074 5.77760 5.84335 5.90366 5.91751 5.98683 6.20356 6.23346 6.37471 6.52168 6.73530 6.84164 7.11471 7.19532 7.43975 7.64461 7.80336 7.88693 8.26679 8.37836 8.52593 8.67303 9.02157 9.57511 11.03746 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036865 B = 0.002305 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.339541 B =12146.541352 C =12420.202890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.110 4.110 7 C -0.081 4.081 8 C -0.093 4.093 9 C 0.126 3.874 10 N -0.742 5.742 11 C 0.512 3.488 12 O -0.524 6.524 13 C 0.044 3.956 14 N -0.673 5.673 15 C 0.211 3.789 16 H 0.002 0.998 17 C -0.125 4.125 18 C -0.516 4.516 19 H 0.062 0.938 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.285 1.285 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.341 0.659 41 H 0.033 0.967 42 H 0.003 0.997 43 H 0.082 0.918 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.623 18.503 15.142 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.131 4.131 9 C 0.002 3.998 10 N -0.397 5.397 11 C 0.299 3.701 12 O -0.398 6.398 13 C -0.089 4.089 14 N -0.306 5.306 15 C 0.104 3.896 16 H 0.020 0.980 17 C -0.184 4.184 18 C -0.554 4.554 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.159 0.841 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.100 0.900 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.292 18.437 14.229 26.334 hybrid contribution -1.348 -0.023 0.047 1.349 sum 10.943 18.414 14.275 25.742 Atomic orbital electron populations 1.20918 0.91141 1.03408 1.02437 1.19815 0.96127 0.92609 0.99277 1.21035 0.94303 0.97461 1.01056 1.21138 0.94330 0.98079 1.00229 1.21127 0.99886 0.92519 1.00817 1.21079 0.93519 0.98332 0.99846 1.19548 0.93602 0.94028 1.00982 1.20799 1.00616 0.94664 0.96978 1.21230 0.96828 0.85994 0.95720 1.46074 1.59518 1.24434 1.09663 1.21098 0.78946 0.87019 0.83050 1.90683 1.55751 1.62229 1.31163 1.21811 0.98517 0.93420 0.95174 1.60512 1.51174 1.07258 1.11647 1.19166 0.89830 0.84278 0.96317 0.98040 1.21736 0.97850 1.01983 0.96811 1.21297 1.23671 1.03417 1.07063 0.91984 1.24920 0.96852 0.95478 0.96834 1.69906 1.40035 1.06974 1.36105 0.86438 0.79834 0.78132 0.83005 1.19672 1.20959 1.21116 0.91055 0.91412 0.90847 0.86104 0.86184 0.86108 0.85925 0.90228 0.90065 0.91495 0.91545 0.76789 0.88945 0.93381 0.84082 0.94784 0.97782 0.89962 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.22 36.00 0.33 -0.59 16 2 C -0.08 -0.69 5.88 -104.63 -0.62 -1.31 16 3 C -0.12 -1.00 9.70 -39.59 -0.38 -1.38 16 4 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 5 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 6 C -0.11 -0.94 9.68 -39.58 -0.38 -1.33 16 7 C -0.08 -0.72 5.13 -104.62 -0.54 -1.26 16 8 C -0.09 -0.74 4.76 -27.88 -0.13 -0.87 16 9 C 0.13 1.38 5.46 -4.05 -0.02 1.36 16 10 N -0.74 -8.80 5.56 -60.30 -0.33 -9.13 16 11 C 0.51 8.57 7.87 -10.99 -0.09 8.48 16 12 O -0.52 -10.98 16.20 5.55 0.09 -10.89 16 13 C 0.04 0.78 5.97 -4.97 -0.03 0.75 16 14 N -0.67 -15.22 5.93 -109.22 -0.65 -15.87 16 15 C 0.21 5.41 2.60 -68.87 -0.18 5.23 16 16 H 0.00 0.05 7.80 -51.92 -0.40 -0.35 16 17 C -0.13 -3.14 9.19 37.16 0.34 -2.80 16 18 C -0.52 -14.42 8.59 -34.44 -0.30 -14.72 16 19 H 0.06 1.74 7.62 -52.49 -0.40 1.34 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.07 0.59 5.40 -51.93 -0.28 0.31 16 29 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.08 0.57 7.01 -51.93 -0.36 0.20 16 35 H 0.07 0.81 6.88 -51.93 -0.36 0.45 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 3.48 8.47 -40.82 -0.35 3.14 16 38 H 0.09 1.54 7.44 -51.93 -0.39 1.16 16 39 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 40 H 0.34 7.91 7.92 -39.29 -0.31 7.60 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 43 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -32.50 360.54 -9.64 -42.14 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.90 Total: 6.18 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.88 Total: -9.58 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.35 Total: -49.80 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.50 -9.64 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.678 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds