Wall clock time and date at job start Fri Apr 10 2020 19:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 119.99999 * 2 1 4 4 C 1.38212 * 120.00301 * 180.22976 * 3 2 1 5 5 C 1.38258 * 119.99529 * 359.81229 * 4 3 2 6 6 C 1.38215 * 120.00286 * 359.97163 * 5 4 3 7 7 C 1.38213 * 120.00050 * 179.78227 * 2 1 3 8 8 C 1.50706 * 119.99781 * 0.02562 * 7 2 1 9 9 C 1.52997 * 109.47238 * 84.72525 * 8 7 2 10 10 N 1.46496 * 109.47294 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00447 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99877 * 180.02562 * 11 10 9 14 14 N 1.46909 * 109.46861 * 180.02562 * 13 11 10 15 15 C 1.46893 * 111.00138 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.47044 * 34.99378 * 15 14 13 17 17 C 1.52999 * 109.47140 * 274.99880 * 15 14 13 18 18 C 1.50695 * 109.47319 * 154.99716 * 15 14 13 19 19 H 1.07999 * 119.99845 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00172 * 179.97438 * 18 15 14 21 21 N 1.31519 * 120.00060 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00174 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47045 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47076 * 120.00121 * 22 20 18 25 25 H 1.48489 * 109.47424 * 240.00059 * 22 20 18 26 26 H 1.09004 * 109.47780 * 270.21458 * 1 2 3 27 27 H 1.08999 * 109.47285 * 30.21654 * 1 2 3 28 28 H 1.09003 * 109.47101 * 150.21278 * 1 2 3 29 29 H 1.08001 * 120.00233 * 0.05876 * 3 2 1 30 30 H 1.07992 * 120.00129 * 179.82816 * 4 3 2 31 31 H 1.08003 * 120.00068 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.99988 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46953 * 204.72137 * 8 7 2 34 34 H 1.09000 * 109.47318 * 324.71735 * 8 7 2 35 35 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 36 36 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 37 37 H 0.97006 * 119.99755 * 359.97438 * 10 9 8 38 38 H 1.09001 * 109.47332 * 299.99611 * 13 11 10 39 39 H 1.08996 * 109.47524 * 60.00287 * 13 11 10 40 40 H 1.00904 * 110.99729 * 303.95200 * 14 13 11 41 41 H 1.08999 * 109.47146 * 300.00157 * 17 15 14 42 42 H 1.09004 * 109.47182 * 59.99867 * 17 15 14 43 43 H 1.09004 * 109.47532 * 179.97438 * 17 15 14 44 44 H 0.96999 * 119.99699 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1969 0.0045 8 6 1.4445 -2.5021 0.0089 9 6 1.0752 -2.8826 -1.4262 10 7 0.3432 -4.1516 -1.4220 11 6 -0.0866 -4.6855 -2.5825 12 8 0.1322 -4.1152 -3.6302 13 6 -0.8401 -5.9906 -2.5780 14 7 -1.1946 -6.3560 -3.9560 15 6 -1.9324 -7.6258 -3.9907 16 1 -2.5678 -7.7010 -3.1082 17 6 -0.9414 -8.7913 -4.0064 18 6 -2.7871 -7.6764 -5.2308 19 1 -2.7823 -6.8484 -5.9242 20 6 -3.5743 -8.7803 -5.4809 21 7 -3.5798 -9.7889 -4.6369 22 14 -4.6332 -8.8435 -7.0186 23 1 -4.4484 -7.5933 -7.7985 24 1 -4.2321 -10.0079 -7.8483 25 1 -6.0603 -8.9796 -6.6316 26 1 -0.3635 0.0038 1.0277 27 1 -0.3634 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 1.6583 2.1326 0.0010 30 1 4.1203 2.1326 -0.0076 31 1 5.3516 0.0000 -0.0090 32 1 4.1206 -2.1322 -0.0014 33 1 2.0711 -3.2819 0.4417 34 1 0.5361 -2.3952 0.6018 35 1 0.4486 -2.1027 -1.8590 36 1 1.9837 -2.9895 -2.0190 37 1 0.1679 -4.6075 -0.5840 38 1 -0.2134 -6.7705 -2.1455 39 1 -1.7484 -5.8838 -1.9850 40 1 -1.7216 -5.6197 -4.4012 41 1 -0.3059 -8.7160 -4.8888 42 1 -0.3232 -8.7546 -3.1093 43 1 -1.4888 -9.7335 -4.0316 44 1 -4.1334 -10.5657 -4.8131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:31 Heat of formation + Delta-G solvation = -46.558827 kcal Electronic energy + Delta-G solvation = -21956.407509 eV Core-core repulsion = 18678.951269 eV Total energy + Delta-G solvation = -3277.456241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88675 -40.30449 -37.53615 -36.45091 -34.47535 -34.04906 -33.08334 -31.13731 -29.62826 -27.85402 -27.43804 -26.52704 -24.20164 -22.81993 -21.91610 -21.65983 -21.14154 -18.90127 -17.76498 -17.27194 -17.14175 -16.95060 -16.72132 -16.40201 -15.78639 -15.52970 -15.24491 -14.89974 -14.64002 -14.37932 -14.25774 -14.02705 -13.78057 -13.47772 -13.28843 -13.11050 -13.05766 -12.83684 -12.66956 -12.60103 -12.44288 -12.28605 -12.19526 -12.00824 -11.81969 -11.74717 -10.96954 -10.78089 -10.56610 -10.09727 -9.69828 -9.46628 -9.07232 -8.14361 -6.27329 0.42249 0.49768 1.40920 1.43284 1.55293 1.66586 2.14180 2.42852 2.85317 3.14212 3.68405 3.82172 3.88600 3.98817 4.07668 4.10497 4.16362 4.27337 4.43690 4.45643 4.49706 4.57408 4.61457 4.80060 4.80299 4.84650 4.96553 4.97506 5.02063 5.08543 5.19612 5.21861 5.35312 5.43880 5.46401 5.60814 5.63972 5.66062 5.75330 5.84619 6.14888 6.22316 6.41748 6.53332 6.77149 6.94463 7.30991 7.42613 8.91383 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036865 B = 0.002305 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.339541 B =12146.541352 C =12420.202890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.127 4.127 5 C -0.136 4.136 6 C -0.122 4.122 7 C -0.097 4.097 8 C -0.080 4.080 9 C 0.130 3.870 10 N -0.717 5.717 11 C 0.516 3.484 12 O -0.572 6.572 13 C 0.043 3.957 14 N -0.683 5.683 15 C 0.216 3.784 16 H -0.016 1.016 17 C -0.115 4.115 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.016 3.984 21 N -0.914 5.914 22 Si 0.961 3.039 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.277 1.277 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.417 0.583 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.334 0.666 41 H 0.022 0.978 42 H 0.030 0.970 43 H 0.061 0.939 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.914 19.122 16.247 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.097 4.097 8 C -0.118 4.118 9 C 0.006 3.994 10 N -0.371 5.371 11 C 0.303 3.697 12 O -0.451 6.451 13 C -0.089 4.089 14 N -0.315 5.315 15 C 0.108 3.892 16 H 0.001 0.999 17 C -0.174 4.174 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.184 4.184 21 N -0.553 5.553 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.202 1.202 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.254 0.746 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.151 0.849 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.597 19.060 15.404 27.554 hybrid contribution -1.381 -0.151 -0.220 1.406 sum 11.216 18.909 15.184 26.719 Atomic orbital electron populations 1.20920 0.90474 1.03228 1.03108 1.20068 0.96852 0.92934 0.99403 1.21310 0.94790 0.97980 1.01017 1.21449 0.94461 0.98954 0.99577 1.21422 1.00942 0.92483 1.00539 1.21328 0.93686 0.99134 0.99857 1.19696 0.93958 0.94364 1.01715 1.20708 1.01445 0.94788 0.94822 1.21248 0.95612 0.84843 0.97677 1.45824 1.57828 1.24410 1.09086 1.20876 0.78732 0.86531 0.83554 1.90671 1.57868 1.63406 1.33121 1.21879 0.99650 0.94571 0.92828 1.60397 1.50207 1.06064 1.14813 1.18981 0.89667 0.85878 0.94633 0.99879 1.21572 0.97547 1.00706 0.97529 1.21579 1.24778 1.03465 1.07981 0.92963 1.25673 0.97935 0.95099 0.99664 1.70002 1.40517 1.07324 1.37440 0.85457 0.78385 0.78011 0.79457 1.19658 1.20463 1.20233 0.89905 0.91035 0.91574 0.84740 0.84328 0.84454 0.84923 0.88705 0.88706 0.92686 0.93093 0.74552 0.87479 0.91589 0.84863 0.95891 0.95140 0.92057 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.22 71.24 0.66 -1.01 16 2 C -0.09 -1.53 5.88 -19.87 -0.12 -1.65 16 3 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 4 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.14 -2.01 10.05 22.27 0.22 -1.78 16 6 C -0.12 -1.95 9.68 22.27 0.22 -1.74 16 7 C -0.10 -1.61 5.13 -19.86 -0.10 -1.71 16 8 C -0.08 -1.13 4.76 29.85 0.14 -0.98 16 9 C 0.13 2.71 5.46 86.38 0.47 3.18 16 10 N -0.72 -15.78 5.56 -463.06 -2.57 -18.35 16 11 C 0.52 16.83 7.87 87.66 0.69 17.52 16 12 O -0.57 -24.13 16.20 -3.04 -0.05 -24.18 16 13 C 0.04 1.48 5.97 85.55 0.51 1.99 16 14 N -0.68 -30.91 5.93 -499.47 -2.96 -33.87 16 15 C 0.22 11.12 2.60 44.17 0.11 11.24 16 16 H -0.02 -0.88 7.80 -2.38 -0.02 -0.90 16 17 C -0.12 -5.74 9.19 71.98 0.66 -5.08 16 18 C -0.54 -30.46 8.59 25.60 0.22 -30.24 16 19 H 0.05 2.98 7.62 -2.91 -0.02 2.96 16 20 C 0.02 0.88 5.30 84.65 0.45 1.33 16 21 N -0.91 -52.16 11.32 21.45 0.24 -51.91 16 22 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 28 H 0.07 1.00 5.40 -2.39 -0.01 0.98 16 29 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 34 H 0.09 1.09 7.01 -2.39 -0.02 1.07 16 35 H 0.05 1.32 6.88 -2.39 -0.02 1.30 16 36 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.42 6.15 8.47 -92.70 -0.79 5.36 16 38 H 0.11 3.35 7.44 -2.39 -0.02 3.33 16 39 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 40 H 0.33 15.76 7.92 -89.69 -0.71 15.05 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 43 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 44 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -69.91 360.54 0.77 -69.14 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.49 Total: 25.34 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.58 Total: -12.36 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.29 Total: -104.14 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.91 0.77 -69.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.584 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds