Wall clock time and date at job start Fri Apr 10 2020 19:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38263 * 119.99608 * 2 1 4 4 C 1.38212 * 119.99914 * 180.23024 * 3 2 1 5 5 C 1.38261 * 119.99686 * 359.81080 * 4 3 2 6 6 C 1.38215 * 120.00345 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.00393 * 179.78968 * 2 1 3 8 8 C 1.50701 * 119.99706 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.46896 * 84.73305 * 8 7 2 10 10 N 1.46501 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00154 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99382 * 359.97438 * 11 10 9 13 13 C 1.50692 * 119.99985 * 179.97438 * 11 10 9 14 14 N 1.46910 * 109.46931 * 179.97438 * 13 11 10 15 15 C 1.46897 * 110.99968 * 179.97438 * 14 13 11 16 16 H 1.09007 * 109.47061 * 324.99931 * 15 14 13 17 17 C 1.53000 * 109.47069 * 84.99944 * 15 14 13 18 18 C 1.50693 * 109.47041 * 204.99783 * 15 14 13 19 19 H 1.08002 * 120.00331 * 354.37159 * 18 15 14 20 20 C 1.37885 * 120.00119 * 174.35968 * 18 15 14 21 21 N 1.31516 * 120.00168 * 156.60535 * 20 18 15 22 22 Si 1.86799 * 119.99974 * 336.88923 * 20 18 15 23 23 H 1.48495 * 109.47179 * 179.71887 * 22 20 18 24 24 H 1.48504 * 109.47000 * 299.71811 * 22 20 18 25 25 H 1.48500 * 109.47297 * 59.71926 * 22 20 18 26 26 H 1.09000 * 109.47575 * 270.20912 * 1 2 3 27 27 H 1.09003 * 109.47367 * 30.21276 * 1 2 3 28 28 H 1.09003 * 109.47013 * 150.21218 * 1 2 3 29 29 H 1.08001 * 120.00392 * 0.06296 * 3 2 1 30 30 H 1.08000 * 120.00058 * 179.83113 * 4 3 2 31 31 H 1.07996 * 119.99931 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.00106 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47386 * 324.73179 * 8 7 2 34 34 H 1.09007 * 109.46965 * 204.72738 * 8 7 2 35 35 H 1.08994 * 109.47206 * 59.99764 * 9 8 7 36 36 H 1.08997 * 109.46792 * 299.99598 * 9 8 7 37 37 H 0.96998 * 119.99951 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47688 * 59.99942 * 13 11 10 39 39 H 1.08997 * 109.47122 * 299.99548 * 13 11 10 40 40 H 1.00899 * 110.99576 * 303.94863 * 14 13 11 41 41 H 1.08996 * 109.47246 * 53.10600 * 17 15 14 42 42 H 1.09003 * 109.46967 * 173.10646 * 17 15 14 43 43 H 1.09006 * 109.47378 * 293.10198 * 17 15 14 44 44 H 0.97002 * 119.99516 * 355.21605 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0048 5 6 4.2717 0.0001 -0.0057 6 6 3.5807 -1.1969 -0.0012 7 6 2.1981 -1.1968 0.0044 8 6 1.4446 -2.5020 0.0098 9 6 1.0744 -2.8830 -1.4251 10 7 0.3425 -4.1520 -1.4200 11 6 -0.0880 -4.6864 -2.5800 12 8 0.1302 -4.1163 -3.6280 13 6 -0.8404 -5.9920 -2.5747 14 7 -1.1971 -6.3572 -3.9523 15 6 -1.9329 -7.6281 -3.9863 16 1 -1.5492 -8.2909 -3.2106 17 6 -3.4197 -7.3633 -3.7413 18 6 -1.7537 -8.2763 -5.3348 19 1 -1.2302 -7.7522 -6.1207 20 6 -2.2579 -9.5388 -5.5654 21 7 -2.5244 -9.9263 -6.7936 22 14 -2.5698 -10.6960 -4.1326 23 1 -3.1150 -11.9796 -4.6426 24 1 -1.2948 -10.9501 -3.4149 25 1 -3.5476 -10.0782 -3.2011 26 1 -0.3634 0.0038 1.0276 27 1 -0.3634 0.8881 -0.5171 28 1 -0.3633 -0.8919 -0.5105 29 1 1.6582 2.1328 0.0010 30 1 4.1203 2.1329 -0.0076 31 1 5.3516 0.0002 -0.0098 32 1 4.1207 -2.1321 -0.0023 33 1 0.5366 -2.3949 0.6030 34 1 2.0716 -3.2817 0.4425 35 1 1.9825 -2.9901 -2.0183 36 1 0.4476 -2.1033 -1.8577 37 1 0.1677 -4.6077 -0.5817 38 1 -1.7482 -5.8860 -1.9808 39 1 -0.2126 -6.7714 -2.1429 40 1 -1.7255 -5.6211 -4.3962 41 1 -3.7743 -6.6070 -4.4415 42 1 -3.9819 -8.2857 -3.8873 43 1 -3.5623 -7.0086 -2.7205 44 1 -2.4324 -9.3016 -7.5300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:36 Heat of formation + Delta-G solvation = -23.451860 kcal Electronic energy + Delta-G solvation = -22017.158468 eV Core-core repulsion = 18740.704220 eV Total energy + Delta-G solvation = -3276.454247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07464 -39.31830 -36.13547 -35.38763 -33.34804 -32.55195 -32.35976 -29.99258 -28.77317 -27.20080 -25.58538 -24.58628 -23.27399 -22.22001 -21.00164 -20.20612 -19.94927 -17.63309 -16.80635 -16.44919 -16.35105 -16.06577 -15.37432 -15.16192 -14.50012 -14.20656 -14.02380 -13.88213 -13.48188 -13.45059 -13.21051 -12.98596 -12.67434 -12.52732 -12.50777 -11.99521 -11.90090 -11.88072 -11.66569 -11.29306 -11.24831 -11.15947 -11.12337 -10.47080 -10.06064 -9.79133 -9.54815 -9.11736 -9.04884 -8.99907 -8.88123 -8.13318 -7.43129 -6.39451 -3.94879 1.01030 1.07659 2.90315 3.16301 3.39179 3.45000 3.45812 3.62307 4.44438 4.46025 4.54415 4.63728 4.68872 4.75157 4.84060 4.98681 5.10594 5.17789 5.21592 5.23520 5.25725 5.29935 5.36682 5.51015 5.60621 5.69433 5.73138 5.74929 5.80803 5.93533 6.16935 6.20358 6.25254 6.33575 6.39437 6.44250 6.59897 6.70140 6.79965 7.19941 7.51743 7.80459 8.29417 8.33861 8.47168 8.51955 9.09997 9.69533 10.97975 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.037655 B = 0.002375 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.422797 B =11786.127802 C =11866.112919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.110 4.110 7 C -0.082 4.082 8 C -0.093 4.093 9 C 0.126 3.874 10 N -0.742 5.742 11 C 0.512 3.488 12 O -0.522 6.522 13 C 0.039 3.961 14 N -0.658 5.658 15 C 0.191 3.809 16 H 0.026 0.974 17 C -0.178 4.178 18 C -0.588 4.588 19 H 0.065 0.935 20 C 0.032 3.968 21 N -0.902 5.902 22 Si 1.037 2.963 23 H -0.285 1.285 24 H -0.284 1.284 25 H -0.280 1.280 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.339 0.661 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.538 20.238 20.431 29.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.143 4.143 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.130 4.130 9 C 0.002 3.998 10 N -0.396 5.396 11 C 0.298 3.702 12 O -0.396 6.396 13 C -0.094 4.094 14 N -0.290 5.290 15 C 0.082 3.918 16 H 0.044 0.956 17 C -0.238 4.238 18 C -0.626 4.626 19 H 0.083 0.917 20 C -0.173 4.173 21 N -0.535 5.535 22 Si 0.866 3.134 23 H -0.211 1.211 24 H -0.210 1.210 25 H -0.207 1.207 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.157 0.843 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.815 18.809 19.851 28.732 hybrid contribution -0.329 1.707 0.464 1.799 sum 8.486 20.516 20.315 30.094 Atomic orbital electron populations 1.20915 0.91174 1.03366 1.02416 1.19811 0.96102 0.92616 0.99335 1.21039 0.94310 0.97454 1.01044 1.21146 0.94328 0.98099 1.00162 1.21133 0.99918 0.92509 1.00752 1.21084 0.93512 0.98356 0.99807 1.19536 0.93609 0.93996 1.01079 1.20794 1.00604 0.94716 0.96904 1.21245 0.96868 0.85871 0.95815 1.46057 1.59493 1.24487 1.09587 1.21009 0.79093 0.86925 0.83136 1.90700 1.55644 1.62152 1.31089 1.21873 0.98511 0.93947 0.95036 1.60491 1.50633 1.06257 1.11591 1.19542 0.86990 0.86721 0.98549 0.95628 1.22857 1.01854 1.01698 0.97341 1.21902 1.40064 1.03515 0.97117 0.91697 1.25660 0.93252 0.97335 1.01097 1.70833 1.42410 1.39953 1.00332 0.84147 0.76863 0.76699 0.75738 1.21098 1.21036 1.20657 0.91066 0.91406 0.90909 0.86091 0.86153 0.86075 0.85906 0.90093 0.90208 0.91461 0.91466 0.76799 0.93460 0.88682 0.84279 0.93593 0.92309 0.96260 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.22 36.01 0.33 -0.54 16 2 C -0.08 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 4 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 6 C -0.11 -0.92 9.68 -39.58 -0.38 -1.31 16 7 C -0.08 -0.71 5.13 -104.63 -0.54 -1.24 16 8 C -0.09 -0.70 4.76 -27.88 -0.13 -0.83 16 9 C 0.13 1.33 5.46 -4.04 -0.02 1.31 16 10 N -0.74 -8.33 5.56 -60.30 -0.33 -8.67 16 11 C 0.51 8.24 7.87 -10.99 -0.09 8.16 16 12 O -0.52 -10.75 16.20 5.55 0.09 -10.66 16 13 C 0.04 0.65 5.97 -4.97 -0.03 0.62 16 14 N -0.66 -14.39 5.86 -109.22 -0.64 -15.03 16 15 C 0.19 4.56 2.17 -68.87 -0.15 4.41 16 16 H 0.03 0.61 6.37 -51.93 -0.33 0.28 16 17 C -0.18 -3.86 8.90 37.16 0.33 -3.53 16 18 C -0.59 -16.94 9.05 -34.44 -0.31 -17.25 16 19 H 0.06 2.08 8.06 -52.49 -0.42 1.66 16 20 C 0.03 0.93 5.19 -17.82 -0.09 0.84 16 21 N -0.90 -27.94 13.70 55.43 0.76 -27.18 16 22 Si 1.04 24.95 26.44 -169.99 -4.50 20.46 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.18 6.15 56.52 0.35 -5.84 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.55 5.40 -51.93 -0.28 0.27 16 29 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.08 0.52 7.01 -51.93 -0.36 0.16 16 34 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.78 6.88 -51.93 -0.36 0.43 16 37 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 38 H 0.05 0.69 7.58 -51.93 -0.39 0.29 16 39 H 0.10 1.47 8.05 -51.93 -0.42 1.05 16 40 H 0.34 7.46 8.09 -39.29 -0.32 7.14 16 41 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 42 H 0.06 1.34 5.48 -51.93 -0.28 1.05 16 43 H 0.02 0.35 7.64 -51.93 -0.40 -0.05 16 44 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -34.30 357.60 -9.02 -43.32 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.91 Total: 7.08 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.88 Total: -14.70 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.22 Total: -50.88 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.50 Total: 20.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.30 -9.02 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.864 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds