Wall clock time and date at job start Fri Apr 10 2020 19:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38300 * 119.93190 * 2 1 4 4 C 1.38095 * 120.06951 * 180.02562 * 3 2 1 5 5 C 1.38889 * 119.93167 * 359.97438 * 4 3 2 6 6 N 1.39918 * 120.07215 * 180.02562 * 5 4 3 7 7 C 1.34779 * 120.00195 * 34.69800 * 6 5 4 8 8 O 1.21288 * 119.99873 * 5.44876 * 7 6 5 9 9 C 1.50694 * 120.00184 * 185.45469 * 7 6 5 10 10 H 1.09006 * 109.47435 * 59.99674 * 9 7 6 11 11 C 1.53001 * 109.47076 * 299.99708 * 9 7 6 12 12 N 1.46903 * 109.47362 * 179.97438 * 9 7 6 13 13 C 1.46894 * 111.00155 * 209.72764 * 12 9 7 14 14 H 1.08998 * 109.47265 * 329.70965 * 13 12 9 15 15 C 1.53003 * 109.47235 * 209.70644 * 13 12 9 16 16 C 1.50706 * 109.46970 * 89.70789 * 13 12 9 17 17 H 1.07996 * 120.00154 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00033 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99656 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00078 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47309 * 60.00028 * 20 18 16 22 22 H 1.48498 * 109.47034 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46984 * 300.00112 * 20 18 16 24 24 C 1.38858 * 119.85594 * 0.28006 * 5 4 3 25 25 C 1.38136 * 119.92794 * 359.44203 * 24 5 4 26 26 C 1.50702 * 119.96041 * 180.25380 * 25 24 5 27 27 H 1.09002 * 109.47112 * 89.99395 * 1 2 3 28 28 H 1.08994 * 109.47542 * 210.00083 * 1 2 3 29 29 H 1.09002 * 109.46984 * 329.99790 * 1 2 3 30 30 H 1.08001 * 119.96731 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.03582 * 179.97438 * 4 3 2 32 32 H 0.96999 * 119.99956 * 214.69088 * 6 5 4 33 33 H 1.09005 * 109.46773 * 295.01929 * 11 9 7 34 34 H 1.08996 * 109.47170 * 55.02289 * 11 9 7 35 35 H 1.09003 * 109.47047 * 175.02966 * 11 9 7 36 36 H 1.00897 * 110.99850 * 85.76972 * 12 9 7 37 37 H 1.08994 * 109.46771 * 54.92191 * 15 13 12 38 38 H 1.08997 * 109.46853 * 174.92079 * 15 13 12 39 39 H 1.09000 * 109.47302 * 294.92123 * 15 13 12 40 40 H 0.97008 * 119.99555 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03450 * 179.72622 * 24 5 4 42 42 H 1.08999 * 109.46885 * 270.29843 * 26 25 24 43 43 H 1.08999 * 109.46979 * 30.30345 * 26 25 24 44 44 H 1.09000 * 109.46515 * 150.30502 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0002 -0.0005 7 6 6.3471 0.9594 0.6639 8 8 5.7448 1.7643 1.3425 9 6 7.8489 1.0324 0.5636 10 1 8.1368 1.1810 -0.4772 11 6 8.4585 -0.2724 1.0800 12 7 8.3397 2.1564 1.3721 13 6 9.5778 2.7099 0.8077 14 1 10.1320 1.9190 0.3022 15 6 10.4346 3.2942 1.9326 16 6 9.2378 3.7957 -0.1806 17 1 8.2054 4.0495 -0.3700 18 6 10.2450 4.4658 -0.8421 19 7 11.5023 4.1570 -0.6110 20 14 9.8237 5.8121 -2.0665 21 1 9.0685 6.8892 -1.3775 22 1 11.0753 6.3715 -2.6372 23 1 8.9922 5.2454 -3.1587 24 6 3.5781 -1.2018 -0.0059 25 6 2.1967 -1.1983 0.0005 26 6 1.4408 -2.5020 0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6554 2.1329 0.0004 31 1 4.1164 2.1382 -0.0010 32 1 6.1581 -0.6909 -0.4786 33 1 8.2450 -0.3771 2.1438 34 1 8.0275 -1.1143 0.5383 35 1 9.5375 -0.2553 0.9261 36 1 8.4726 1.8796 2.3332 37 1 10.6050 2.5319 2.6929 38 1 11.3913 3.6232 1.5272 39 1 9.9178 4.1436 2.3792 40 1 12.2109 4.6282 -1.0767 41 1 4.1163 -2.1381 -0.0104 42 1 1.2585 -2.8162 -1.0272 43 1 2.0285 -3.2627 0.5143 44 1 0.4886 -2.3698 0.5143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:43 Heat of formation + Delta-G solvation = -16.030142 kcal Electronic energy + Delta-G solvation = -22887.932092 eV Core-core repulsion = 19611.799674 eV Total energy + Delta-G solvation = -3276.132418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39785 -38.82223 -36.19451 -34.92373 -33.14169 -32.45466 -31.59389 -30.34906 -27.57459 -26.95717 -26.06333 -25.13812 -23.67661 -22.27577 -20.98516 -20.27301 -19.49238 -17.50662 -16.56970 -16.01437 -15.48213 -15.45616 -15.02460 -14.61659 -14.34825 -14.30440 -13.69057 -13.65143 -13.39109 -13.07673 -12.94463 -12.71082 -12.64355 -12.41251 -12.13754 -12.03791 -11.89208 -11.37565 -11.34052 -11.05403 -10.98348 -10.87707 -10.68967 -10.37956 -10.15621 -9.96243 -9.92405 -9.33590 -9.08755 -8.69576 -8.39501 -7.84911 -7.26872 -5.98262 -4.01288 1.33028 1.42856 3.01230 3.24192 3.35177 3.38812 3.43800 3.82801 4.45163 4.72245 4.81078 4.97661 5.02566 5.04072 5.13608 5.26797 5.31899 5.34780 5.39641 5.47470 5.52745 5.58862 5.66446 5.71602 5.79030 5.86768 5.90682 6.08272 6.13863 6.28694 6.39591 6.45856 6.66843 6.67582 6.72258 6.92457 6.99663 7.15502 7.34972 7.61143 7.72339 7.92255 8.21114 8.33450 8.55228 8.69692 9.07015 9.64144 11.08233 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021862 B = 0.003472 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.473621 B = 8062.912373 C = 8812.092220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.096 4.096 4 C -0.122 4.122 5 C 0.159 3.841 6 N -0.685 5.685 7 C 0.518 3.482 8 O -0.496 6.496 9 C 0.077 3.923 10 H 0.111 0.889 11 C -0.175 4.175 12 N -0.662 5.662 13 C 0.214 3.786 14 H 0.006 0.994 15 C -0.142 4.142 16 C -0.495 4.495 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.279 1.279 24 C -0.150 4.150 25 C -0.072 4.072 26 C -0.114 4.114 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.406 0.594 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.325 0.675 37 H 0.006 0.994 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 -14.272 0.168 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.115 4.115 4 C -0.142 4.142 5 C 0.064 3.936 6 N -0.332 5.332 7 C 0.305 3.695 8 O -0.367 6.367 9 C -0.037 4.037 10 H 0.128 0.872 11 C -0.235 4.235 12 N -0.293 5.293 13 C 0.108 3.892 14 H 0.024 0.976 15 C -0.201 4.201 16 C -0.534 4.534 17 H 0.080 0.920 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.171 4.171 25 C -0.073 4.073 26 C -0.170 4.170 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.242 0.758 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.025 0.975 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.463 -13.080 0.319 21.029 hybrid contribution 0.879 -0.229 -0.713 1.155 sum -15.584 -13.309 -0.394 20.497 Atomic orbital electron populations 1.20791 0.91546 1.02532 1.01971 1.19670 0.95816 0.92616 1.03296 1.20896 0.93605 0.97432 0.99558 1.21209 0.94109 0.97996 1.00895 1.17755 0.83102 0.93770 0.98926 1.43821 1.04200 1.31539 1.53690 1.21376 0.90850 0.79428 0.77862 1.90671 1.69862 1.38500 1.37632 1.21390 0.89208 0.91462 1.01676 0.87171 1.22496 1.02460 0.97090 1.01438 1.60293 1.35950 1.29349 1.03695 1.19225 0.83527 0.93925 0.92572 0.97639 1.21966 1.03148 0.98492 0.96479 1.21196 0.93154 1.17798 1.21280 0.92011 1.24947 0.94997 0.97334 0.97169 1.69882 0.98752 1.42265 1.42951 0.86592 0.77392 0.82279 0.81324 1.20230 1.21447 1.20430 1.20704 0.93724 0.96428 1.06241 1.19452 0.92863 0.94829 1.00137 1.20825 1.00014 0.94038 1.02170 0.91536 0.91480 0.91837 0.85935 0.84643 0.75790 0.92319 0.92606 0.91103 0.85739 0.97504 0.89420 0.94342 0.93034 0.86014 0.91284 0.91785 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.60 36.01 0.35 -0.59 16 2 C -0.11 -1.30 5.88 -104.59 -0.62 -1.91 16 3 C -0.10 -1.27 9.69 -39.61 -0.38 -1.65 16 4 C -0.12 -1.90 8.65 -39.39 -0.34 -2.24 16 5 C 0.16 2.30 6.25 -83.70 -0.52 1.77 16 6 N -0.69 -9.62 5.25 -9.86 -0.05 -9.67 16 7 C 0.52 9.20 6.95 -10.99 -0.08 9.12 16 8 O -0.50 -10.68 14.22 5.55 0.08 -10.61 16 9 C 0.08 1.38 2.81 -68.87 -0.19 1.19 16 10 H 0.11 2.09 7.72 -51.93 -0.40 1.69 16 11 C -0.18 -2.43 9.15 37.16 0.34 -2.09 16 12 N -0.66 -14.29 5.57 -102.17 -0.57 -14.86 16 13 C 0.21 5.28 2.41 -68.86 -0.17 5.12 16 14 H 0.01 0.15 7.51 -51.93 -0.39 -0.24 16 15 C -0.14 -3.42 8.89 37.16 0.33 -3.09 16 16 C -0.50 -13.78 8.76 -34.44 -0.30 -14.08 16 17 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 18 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 19 N -0.90 -25.45 11.37 55.43 0.63 -24.82 16 20 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.15 -1.80 9.62 -39.39 -0.38 -2.17 16 25 C -0.07 -0.80 5.88 -104.65 -0.62 -1.41 16 26 C -0.11 -0.89 9.60 36.01 0.35 -0.54 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.14 2.43 6.53 -52.48 -0.34 2.09 16 32 H 0.41 4.35 8.02 -40.82 -0.33 4.02 16 33 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.05 0.60 7.32 -51.93 -0.38 0.22 16 35 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 36 H 0.32 6.54 7.82 -39.29 -0.31 6.23 16 37 H 0.01 0.13 8.02 -51.93 -0.42 -0.29 16 38 H 0.09 2.29 6.22 -51.93 -0.32 1.97 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 44 H 0.07 0.47 5.94 -51.93 -0.31 0.17 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -31.82 356.52 -8.72 -40.54 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.83 Total: 8.45 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.33 Total: -11.13 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.01 Total: -49.35 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.82 -8.72 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.505 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds