Wall clock time and date at job start Fri Apr 10 2020 19:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38300 * 119.93190 * 2 1 4 4 C 1.38095 * 120.06951 * 180.02562 * 3 2 1 5 5 C 1.38889 * 119.93167 * 359.97438 * 4 3 2 6 6 N 1.39918 * 120.07215 * 180.02562 * 5 4 3 7 7 C 1.34779 * 120.00195 * 34.69800 * 6 5 4 8 8 O 1.21288 * 119.99873 * 5.44876 * 7 6 5 9 9 C 1.50694 * 120.00184 * 185.45469 * 7 6 5 10 10 H 1.09006 * 109.47435 * 59.99674 * 9 7 6 11 11 C 1.53001 * 109.47076 * 299.99708 * 9 7 6 12 12 N 1.46903 * 109.47362 * 179.97438 * 9 7 6 13 13 C 1.46894 * 111.00155 * 209.72764 * 12 9 7 14 14 H 1.08998 * 109.47265 * 329.70965 * 13 12 9 15 15 C 1.53003 * 109.47235 * 209.70644 * 13 12 9 16 16 C 1.50706 * 109.46970 * 89.70789 * 13 12 9 17 17 H 1.07996 * 120.00154 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00033 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99656 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00078 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47309 * 60.00028 * 20 18 16 22 22 H 1.48498 * 109.47034 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46984 * 300.00112 * 20 18 16 24 24 C 1.38858 * 119.85594 * 0.28006 * 5 4 3 25 25 C 1.38136 * 119.92794 * 359.44203 * 24 5 4 26 26 C 1.50702 * 119.96041 * 180.25380 * 25 24 5 27 27 H 1.09002 * 109.47112 * 89.99395 * 1 2 3 28 28 H 1.08994 * 109.47542 * 210.00083 * 1 2 3 29 29 H 1.09002 * 109.46984 * 329.99790 * 1 2 3 30 30 H 1.08001 * 119.96731 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.03582 * 179.97438 * 4 3 2 32 32 H 0.96999 * 119.99956 * 214.69088 * 6 5 4 33 33 H 1.09005 * 109.46773 * 295.01929 * 11 9 7 34 34 H 1.08996 * 109.47170 * 55.02289 * 11 9 7 35 35 H 1.09003 * 109.47047 * 175.02966 * 11 9 7 36 36 H 1.00897 * 110.99850 * 85.76972 * 12 9 7 37 37 H 1.08994 * 109.46771 * 54.92191 * 15 13 12 38 38 H 1.08997 * 109.46853 * 174.92079 * 15 13 12 39 39 H 1.09000 * 109.47302 * 294.92123 * 15 13 12 40 40 H 0.97008 * 119.99555 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03450 * 179.72622 * 24 5 4 42 42 H 1.08999 * 109.46885 * 270.29843 * 26 25 24 43 43 H 1.08999 * 109.46979 * 30.30345 * 26 25 24 44 44 H 1.09000 * 109.46515 * 150.30502 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0002 -0.0005 7 6 6.3471 0.9594 0.6639 8 8 5.7448 1.7643 1.3425 9 6 7.8489 1.0324 0.5636 10 1 8.1368 1.1810 -0.4772 11 6 8.4585 -0.2724 1.0800 12 7 8.3397 2.1564 1.3721 13 6 9.5778 2.7099 0.8077 14 1 10.1320 1.9190 0.3022 15 6 10.4346 3.2942 1.9326 16 6 9.2378 3.7957 -0.1806 17 1 8.2054 4.0495 -0.3700 18 6 10.2450 4.4658 -0.8421 19 7 11.5023 4.1570 -0.6110 20 14 9.8237 5.8121 -2.0665 21 1 9.0685 6.8892 -1.3775 22 1 11.0753 6.3715 -2.6372 23 1 8.9922 5.2454 -3.1587 24 6 3.5781 -1.2018 -0.0059 25 6 2.1967 -1.1983 0.0005 26 6 1.4408 -2.5020 0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6554 2.1329 0.0004 31 1 4.1164 2.1382 -0.0010 32 1 6.1581 -0.6909 -0.4786 33 1 8.2450 -0.3771 2.1438 34 1 8.0275 -1.1143 0.5383 35 1 9.5375 -0.2553 0.9261 36 1 8.4726 1.8796 2.3332 37 1 10.6050 2.5319 2.6929 38 1 11.3913 3.6232 1.5272 39 1 9.9178 4.1436 2.3792 40 1 12.2109 4.6282 -1.0767 41 1 4.1163 -2.1381 -0.0104 42 1 1.2585 -2.8162 -1.0272 43 1 2.0285 -3.2627 0.5143 44 1 0.4886 -2.3698 0.5143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:42 Heat of formation + Delta-G solvation = -36.422702 kcal Electronic energy + Delta-G solvation = -22888.816380 eV Core-core repulsion = 19611.799674 eV Total energy + Delta-G solvation = -3277.016705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60222 -39.96959 -37.85361 -36.16648 -34.97076 -33.46782 -32.78807 -31.87513 -28.69772 -28.28175 -27.27531 -26.96722 -24.96112 -23.22676 -22.40894 -21.94853 -20.72068 -18.72995 -18.28573 -17.69367 -16.80694 -16.56630 -16.42679 -16.13163 -15.81846 -15.25977 -15.06829 -15.00250 -14.68453 -14.42325 -14.04449 -13.84864 -13.53602 -13.50694 -13.33507 -13.28116 -12.89600 -12.86706 -12.74750 -12.66747 -12.38079 -12.30493 -12.12474 -12.09153 -11.94547 -11.90728 -11.25631 -11.09023 -10.64794 -10.51169 -9.66609 -9.00857 -8.89936 -8.10882 -6.21519 0.30630 0.44198 1.38857 1.40702 1.48759 1.67226 2.02586 2.41903 2.82094 3.15528 3.57122 3.75156 3.91866 3.97267 4.10839 4.13913 4.24455 4.32172 4.40133 4.55137 4.69281 4.75905 4.78318 4.83451 4.85972 4.89422 4.95043 4.97651 5.01913 5.05270 5.14912 5.16714 5.25490 5.39421 5.44609 5.49712 5.62577 5.69301 5.76155 5.81446 6.14541 6.26594 6.35452 6.56371 6.89616 6.90424 7.24250 7.47730 8.93011 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021862 B = 0.003472 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.473621 B = 8062.912373 C = 8812.092220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.109 4.109 4 C -0.152 4.152 5 C 0.134 3.866 6 N -0.667 5.667 7 C 0.520 3.480 8 O -0.542 6.542 9 C 0.076 3.924 10 H 0.095 0.905 11 C -0.164 4.164 12 N -0.678 5.678 13 C 0.223 3.777 14 H -0.009 1.009 15 C -0.133 4.133 16 C -0.516 4.516 17 H 0.039 0.961 18 C 0.016 3.984 19 N -0.916 5.916 20 Si 0.951 3.049 21 H -0.279 1.279 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.144 4.144 25 C -0.073 4.073 26 C -0.112 4.112 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.423 0.577 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.332 0.668 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 -16.834 -0.231 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.127 4.127 4 C -0.173 4.173 5 C 0.040 3.960 6 N -0.315 5.315 7 C 0.308 3.692 8 O -0.417 6.417 9 C -0.038 4.038 10 H 0.113 0.887 11 C -0.223 4.223 12 N -0.309 5.309 13 C 0.115 3.885 14 H 0.009 0.991 15 C -0.191 4.191 16 C -0.555 4.555 17 H 0.058 0.942 18 C -0.183 4.183 19 N -0.556 5.556 20 Si 0.777 3.223 21 H -0.205 1.205 22 H -0.203 1.203 23 H -0.200 1.200 24 C -0.165 4.165 25 C -0.074 4.074 26 C -0.168 4.168 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.116 0.884 32 H 0.262 0.738 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.168 0.832 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.137 -15.695 -0.104 23.985 hybrid contribution 1.279 0.509 -0.604 1.503 sum -16.858 -15.186 -0.708 22.701 Atomic orbital electron populations 1.20867 0.89030 1.03683 1.03137 1.20085 0.97684 0.92020 1.01557 1.21067 0.92786 0.98953 0.99930 1.21093 0.95328 0.97237 1.03633 1.17938 0.82912 0.94429 1.00731 1.43509 1.04446 1.30832 1.52676 1.21294 0.90716 0.79518 0.77691 1.90654 1.70566 1.40468 1.40035 1.21401 0.89557 0.92466 1.00361 0.88750 1.22379 1.01920 0.95788 1.02180 1.60090 1.34416 1.31932 1.04494 1.18964 0.84576 0.92781 0.92172 0.99111 1.21799 1.01547 0.98885 0.96881 1.21396 0.92198 1.19195 1.22730 0.94218 1.25587 0.94941 0.99131 0.98606 1.69973 0.99240 1.42948 1.43483 0.85725 0.77466 0.79713 0.79373 1.20504 1.20292 1.19992 1.21013 0.94356 0.96284 1.04811 1.19956 0.92817 0.96306 0.98315 1.20906 1.00282 0.92158 1.03477 0.90213 0.89590 0.91503 0.85210 0.88386 0.73808 0.91613 0.88913 0.91595 0.84912 0.94403 0.91645 0.95531 0.92839 0.83234 0.89798 0.90606 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.60 71.24 0.68 -0.85 16 2 C -0.11 -2.38 5.88 -19.84 -0.12 -2.50 16 3 C -0.11 -2.90 9.69 22.25 0.22 -2.69 16 4 C -0.15 -5.01 8.65 22.39 0.19 -4.81 16 5 C 0.13 3.84 6.25 38.15 0.24 4.08 16 6 N -0.67 -18.54 5.25 -303.51 -1.59 -20.13 16 7 C 0.52 18.96 6.95 87.65 0.61 19.57 16 8 O -0.54 -24.59 14.22 -3.06 -0.04 -24.63 16 9 C 0.08 2.77 2.81 44.17 0.12 2.89 16 10 H 0.09 3.70 7.72 -2.38 -0.02 3.69 16 11 C -0.16 -4.30 9.15 71.98 0.66 -3.64 16 12 N -0.68 -30.02 5.57 -477.15 -2.66 -32.68 16 13 C 0.22 11.26 2.41 44.17 0.11 11.36 16 14 H -0.01 -0.46 7.51 -2.39 -0.02 -0.47 16 15 C -0.13 -6.45 8.89 71.98 0.64 -5.81 16 16 C -0.52 -29.64 8.76 25.60 0.22 -29.41 16 17 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 18 C 0.02 0.91 5.30 84.65 0.45 1.36 16 19 N -0.92 -52.49 11.37 21.45 0.24 -52.25 16 20 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 24 C -0.14 -3.13 9.62 22.39 0.22 -2.91 16 25 C -0.07 -1.42 5.88 -19.88 -0.12 -1.53 16 26 C -0.11 -1.27 9.60 71.24 0.68 -0.59 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 0.88 5.94 -2.39 -0.01 0.86 16 29 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.10 3.90 6.53 -2.91 -0.02 3.88 16 32 H 0.42 8.42 8.02 -92.71 -0.74 7.67 16 33 H 0.06 1.65 8.03 -2.38 -0.02 1.64 16 34 H 0.09 1.73 7.32 -2.39 -0.02 1.71 16 35 H 0.07 1.82 7.91 -2.39 -0.02 1.80 16 36 H 0.33 13.54 7.82 -89.70 -0.70 12.84 16 37 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 38 H 0.06 3.47 6.22 -2.39 -0.01 3.46 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 44 H 0.08 0.75 5.94 -2.39 -0.01 0.73 16 Total: -1.00 -71.80 356.52 2.35 -69.44 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.43 Total: 28.48 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.81 Total: -15.48 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.01 Total: -105.06 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.80 2.35 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.021 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds