Wall clock time and date at job start Fri Apr 10 2020 19:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38290 * 119.96203 * 2 1 4 4 C 1.38281 * 120.13651 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.95840 * 179.97438 * 4 3 2 6 6 C 1.38106 * 120.07275 * 0.02562 * 4 3 2 7 7 C 1.38867 * 119.93123 * 359.97292 * 6 4 3 8 8 N 1.39931 * 120.06953 * 180.02562 * 7 6 4 9 9 C 1.34773 * 119.99786 * 327.09035 * 8 7 6 10 10 O 1.21278 * 120.00355 * 355.02165 * 9 8 7 11 11 C 1.50705 * 119.99592 * 175.02721 * 9 8 7 12 12 H 1.08997 * 109.47386 * 60.00143 * 11 9 8 13 13 C 1.52998 * 109.47242 * 300.00079 * 11 9 8 14 14 N 1.46898 * 109.46921 * 179.97438 * 11 9 8 15 15 C 1.46906 * 110.99934 * 203.89423 * 14 11 9 16 16 H 1.08997 * 109.46920 * 325.15100 * 15 14 11 17 17 C 1.53002 * 109.46846 * 205.15479 * 15 14 11 18 18 C 1.50695 * 109.46961 * 85.15804 * 15 14 11 19 19 H 1.08000 * 120.00033 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99647 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00029 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99720 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47076 * 60.00099 * 22 20 18 24 24 H 1.48503 * 109.46903 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47475 * 299.99767 * 22 20 18 26 26 C 1.38108 * 119.96528 * 180.23652 * 2 1 3 27 27 H 1.08996 * 109.47098 * 89.99692 * 1 2 3 28 28 H 1.09004 * 109.46554 * 210.00088 * 1 2 3 29 29 H 1.08997 * 109.46861 * 329.99813 * 1 2 3 30 30 H 1.08000 * 119.92752 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47524 * 270.01769 * 5 4 3 32 32 H 1.08993 * 109.47365 * 30.02358 * 5 4 3 33 33 H 1.08999 * 109.47250 * 150.02718 * 5 4 3 34 34 H 1.08002 * 120.03375 * 179.97438 * 6 4 3 35 35 H 0.97000 * 119.99819 * 147.37151 * 8 7 6 36 36 H 1.08996 * 109.47299 * 55.31087 * 13 11 9 37 37 H 1.08994 * 109.47462 * 175.32140 * 13 11 9 38 38 H 1.09006 * 109.46666 * 295.31817 * 13 11 9 39 39 H 1.00901 * 111.00240 * 327.84691 * 14 11 9 40 40 H 1.09001 * 109.46784 * 183.12089 * 17 15 14 41 41 H 1.09000 * 109.47604 * 303.12266 * 17 15 14 42 42 H 1.09003 * 109.47190 * 63.12038 * 17 15 14 43 43 H 0.97005 * 119.99731 * 180.02562 * 21 20 18 44 44 H 1.07994 * 120.03892 * 0.03781 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1981 0.0000 4 6 3.5805 1.2023 -0.0005 5 6 4.3290 2.5102 -0.0011 6 6 4.2762 0.0093 -0.0016 7 6 3.5856 -1.1955 -0.0016 8 7 4.2875 -2.4060 -0.0021 9 6 5.4730 -2.4972 -0.6368 10 8 5.8888 -1.5589 -1.2828 11 6 6.2818 -3.7654 -0.5437 12 1 5.7027 -4.5962 -0.9468 13 6 6.6241 -4.0457 0.9209 14 7 7.5218 -3.6131 -1.3164 15 6 8.0488 -4.9208 -1.7293 16 1 7.8455 -5.6565 -0.9513 17 6 9.5592 -4.8154 -1.9496 18 6 7.3828 -5.3485 -3.0117 19 1 6.6419 -4.7127 -3.4735 20 6 7.7187 -6.5519 -3.5948 21 7 8.6205 -7.3263 -3.0321 22 14 6.8926 -7.0825 -5.1840 23 1 7.1696 -6.0804 -6.2443 24 1 7.4254 -8.4043 -5.6015 25 1 5.4267 -7.1843 -4.9700 26 6 2.1968 -1.1965 -0.0049 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6559 2.1323 -0.0004 31 1 4.5089 2.8256 -1.0289 32 1 3.7376 3.2676 0.5131 33 1 5.2823 2.3835 0.5119 34 1 5.3562 0.0133 -0.0024 35 1 3.9190 -3.1806 0.4508 36 1 5.7069 -4.0762 1.5090 37 1 7.1368 -5.0045 0.9972 38 1 7.2726 -3.2558 1.3000 39 1 7.3791 -3.0124 -2.1145 40 1 9.9414 -5.7708 -2.3092 41 1 9.7657 -4.0404 -2.6877 42 1 10.0466 -4.5600 -1.0086 43 1 8.8571 -8.1728 -3.4426 44 1 1.6569 -2.1317 -0.0094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:57 Heat of formation + Delta-G solvation = -24.165381 kcal Electronic energy + Delta-G solvation = -22944.434894 eV Core-core repulsion = 19667.949706 eV Total energy + Delta-G solvation = -3276.485188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53867 -38.84561 -36.00465 -34.89980 -33.58032 -33.01834 -31.00444 -29.82720 -27.34540 -27.15021 -26.79229 -25.07005 -24.10863 -21.58345 -21.10784 -19.96885 -19.49135 -17.40831 -16.68222 -16.32852 -16.19698 -15.62689 -14.83863 -14.73668 -14.48797 -14.13024 -13.68721 -13.53165 -13.32040 -13.08016 -12.89808 -12.62921 -12.52839 -12.17272 -11.98683 -11.92088 -11.78881 -11.58967 -11.30392 -11.23413 -11.11199 -10.96711 -10.82544 -10.28423 -10.14595 -10.11128 -10.00529 -9.35349 -9.13802 -8.57990 -8.42712 -8.04017 -7.38110 -6.03500 -4.16551 1.27633 1.35939 2.83735 3.14367 3.26604 3.31729 3.35227 3.75978 4.37293 4.68765 4.70020 4.92134 5.10169 5.14934 5.18981 5.24741 5.26526 5.31629 5.42080 5.53697 5.56423 5.61612 5.67359 5.74089 5.80466 5.89194 6.04366 6.06681 6.30871 6.36845 6.39486 6.55372 6.57692 6.63348 6.86780 7.08006 7.15519 7.26614 7.39869 7.52430 7.71840 8.05410 8.11385 8.24515 8.33205 8.61511 8.95713 9.51760 10.97228 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.003544 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.968124 B = 7899.130345 C = 8454.092514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.065 4.065 5 C -0.112 4.112 6 C -0.128 4.128 7 C 0.165 3.835 8 N -0.679 5.679 9 C 0.517 3.483 10 O -0.511 6.511 11 C 0.074 3.926 12 H 0.076 0.924 13 C -0.132 4.132 14 N -0.674 5.674 15 C 0.209 3.791 16 H 0.035 0.965 17 C -0.125 4.125 18 C -0.549 4.549 19 H 0.052 0.948 20 C 0.069 3.931 21 N -0.885 5.885 22 Si 0.889 3.111 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.278 1.278 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.410 0.590 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.344 0.656 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.014 0.986 43 H 0.262 0.738 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.484 12.707 9.677 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.163 4.163 4 C -0.065 4.065 5 C -0.169 4.169 6 C -0.149 4.149 7 C 0.070 3.930 8 N -0.325 5.325 9 C 0.305 3.695 10 O -0.384 6.384 11 C -0.040 4.040 12 H 0.094 0.906 13 C -0.190 4.190 14 N -0.308 5.308 15 C 0.101 3.899 16 H 0.053 0.947 17 C -0.184 4.184 18 C -0.588 4.588 19 H 0.071 0.929 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.717 3.283 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.204 1.204 26 C -0.179 4.179 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.246 0.754 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.164 0.836 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.586 13.185 9.733 20.664 hybrid contribution -1.292 -1.146 -1.535 2.310 sum -13.878 12.040 8.198 20.119 Atomic orbital electron populations 1.20765 0.91140 1.02602 1.02318 1.19617 0.95768 0.92525 0.98830 1.20813 0.93435 0.97344 1.04714 1.19767 0.93580 0.95036 0.98153 1.20775 0.99928 0.93717 1.02499 1.21071 1.01035 0.90344 1.02410 1.17761 0.90722 0.86063 0.98439 1.43715 1.21619 1.12000 1.55151 1.21407 0.80162 0.90824 0.77103 1.90663 1.69042 1.39662 1.39025 1.21369 0.92670 0.92618 0.97361 0.90607 1.21745 1.00842 1.03261 0.93187 1.60998 1.23970 1.17148 1.28707 1.19218 0.92321 0.84154 0.94208 0.94729 1.21674 0.97318 1.01966 0.97396 1.21838 1.23251 1.04377 1.09379 0.92944 1.24914 0.94856 0.96385 0.97213 1.69867 1.31272 1.11713 1.39481 0.86704 0.79701 0.77844 0.84040 1.20198 1.21145 1.20403 1.20725 0.92080 0.98289 1.06819 0.91195 0.91601 0.91592 0.86320 0.91024 0.91677 0.91430 0.84594 0.75389 0.93284 0.91077 0.91934 0.83632 0.89794 0.95614 0.96722 0.92762 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.07 -0.73 5.88 -104.65 -0.62 -1.34 16 3 C -0.14 -1.60 9.35 -39.55 -0.37 -1.97 16 4 C -0.06 -0.80 5.88 -104.66 -0.62 -1.42 16 5 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 6 C -0.13 -1.89 8.31 -39.40 -0.33 -2.21 16 7 C 0.16 2.32 6.29 -83.69 -0.53 1.79 16 8 N -0.68 -9.37 5.15 -9.86 -0.05 -9.42 16 9 C 0.52 8.98 6.93 -10.98 -0.08 8.91 16 10 O -0.51 -10.46 13.31 5.56 0.07 -10.39 16 11 C 0.07 1.34 2.84 -68.86 -0.20 1.15 16 12 H 0.08 1.46 7.65 -51.93 -0.40 1.06 16 13 C -0.13 -2.01 9.31 37.16 0.35 -1.67 16 14 N -0.67 -14.76 5.92 -102.17 -0.60 -15.37 16 15 C 0.21 5.18 2.40 -68.86 -0.17 5.02 16 16 H 0.03 0.91 7.07 -51.93 -0.37 0.54 16 17 C -0.13 -3.10 9.34 37.16 0.35 -2.75 16 18 C -0.55 -14.88 8.27 -34.44 -0.28 -15.17 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 21 N -0.89 -24.80 11.30 55.43 0.63 -24.17 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.16 -1.89 9.62 -39.39 -0.38 -2.27 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.14 2.23 6.38 -52.49 -0.33 1.90 16 35 H 0.41 4.39 8.35 -40.82 -0.34 4.04 16 36 H 0.05 0.58 7.56 -51.93 -0.39 0.18 16 37 H 0.07 1.15 7.41 -51.93 -0.39 0.77 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.34 8.04 7.17 -39.29 -0.28 7.76 16 40 H 0.08 2.24 5.99 -51.93 -0.31 1.93 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -30.40 359.06 -8.79 -39.19 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.99 Total: 10.01 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.23 Total: -11.42 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.03 Total: -48.96 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.40 -8.79 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.020 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds