Wall clock time and date at job start Fri Apr 10 2020 19:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38290 * 119.96203 * 2 1 4 4 C 1.38281 * 120.13651 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.95840 * 179.97438 * 4 3 2 6 6 C 1.38106 * 120.07275 * 0.02562 * 4 3 2 7 7 C 1.38867 * 119.93123 * 359.97292 * 6 4 3 8 8 N 1.39931 * 120.06953 * 180.02562 * 7 6 4 9 9 C 1.34773 * 119.99786 * 327.09035 * 8 7 6 10 10 O 1.21278 * 120.00355 * 355.02165 * 9 8 7 11 11 C 1.50705 * 119.99592 * 175.02721 * 9 8 7 12 12 H 1.08997 * 109.47386 * 60.00143 * 11 9 8 13 13 C 1.52998 * 109.47242 * 300.00079 * 11 9 8 14 14 N 1.46898 * 109.46921 * 179.97438 * 11 9 8 15 15 C 1.46906 * 110.99934 * 203.89423 * 14 11 9 16 16 H 1.08997 * 109.46920 * 325.15100 * 15 14 11 17 17 C 1.53002 * 109.46846 * 205.15479 * 15 14 11 18 18 C 1.50695 * 109.46961 * 85.15804 * 15 14 11 19 19 H 1.08000 * 120.00033 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99647 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00029 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99720 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47076 * 60.00099 * 22 20 18 24 24 H 1.48503 * 109.46903 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47475 * 299.99767 * 22 20 18 26 26 C 1.38108 * 119.96528 * 180.23652 * 2 1 3 27 27 H 1.08996 * 109.47098 * 89.99692 * 1 2 3 28 28 H 1.09004 * 109.46554 * 210.00088 * 1 2 3 29 29 H 1.08997 * 109.46861 * 329.99813 * 1 2 3 30 30 H 1.08000 * 119.92752 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47524 * 270.01769 * 5 4 3 32 32 H 1.08993 * 109.47365 * 30.02358 * 5 4 3 33 33 H 1.08999 * 109.47250 * 150.02718 * 5 4 3 34 34 H 1.08002 * 120.03375 * 179.97438 * 6 4 3 35 35 H 0.97000 * 119.99819 * 147.37151 * 8 7 6 36 36 H 1.08996 * 109.47299 * 55.31087 * 13 11 9 37 37 H 1.08994 * 109.47462 * 175.32140 * 13 11 9 38 38 H 1.09006 * 109.46666 * 295.31817 * 13 11 9 39 39 H 1.00901 * 111.00240 * 327.84691 * 14 11 9 40 40 H 1.09001 * 109.46784 * 183.12089 * 17 15 14 41 41 H 1.09000 * 109.47604 * 303.12266 * 17 15 14 42 42 H 1.09003 * 109.47190 * 63.12038 * 17 15 14 43 43 H 0.97005 * 119.99731 * 180.02562 * 21 20 18 44 44 H 1.07994 * 120.03892 * 0.03781 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1981 0.0000 4 6 3.5805 1.2023 -0.0005 5 6 4.3290 2.5102 -0.0011 6 6 4.2762 0.0093 -0.0016 7 6 3.5856 -1.1955 -0.0016 8 7 4.2875 -2.4060 -0.0021 9 6 5.4730 -2.4972 -0.6368 10 8 5.8888 -1.5589 -1.2828 11 6 6.2818 -3.7654 -0.5437 12 1 5.7027 -4.5962 -0.9468 13 6 6.6241 -4.0457 0.9209 14 7 7.5218 -3.6131 -1.3164 15 6 8.0488 -4.9208 -1.7293 16 1 7.8455 -5.6565 -0.9513 17 6 9.5592 -4.8154 -1.9496 18 6 7.3828 -5.3485 -3.0117 19 1 6.6419 -4.7127 -3.4735 20 6 7.7187 -6.5519 -3.5948 21 7 8.6205 -7.3263 -3.0321 22 14 6.8926 -7.0825 -5.1840 23 1 7.1696 -6.0804 -6.2443 24 1 7.4254 -8.4043 -5.6015 25 1 5.4267 -7.1843 -4.9700 26 6 2.1968 -1.1965 -0.0049 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6559 2.1323 -0.0004 31 1 4.5089 2.8256 -1.0289 32 1 3.7376 3.2676 0.5131 33 1 5.2823 2.3835 0.5119 34 1 5.3562 0.0133 -0.0024 35 1 3.9190 -3.1806 0.4508 36 1 5.7069 -4.0762 1.5090 37 1 7.1368 -5.0045 0.9972 38 1 7.2726 -3.2558 1.3000 39 1 7.3791 -3.0124 -2.1145 40 1 9.9414 -5.7708 -2.3092 41 1 9.7657 -4.0404 -2.6877 42 1 10.0466 -4.5600 -1.0086 43 1 8.8571 -8.1728 -3.4426 44 1 1.6569 -2.1317 -0.0094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:41:57 Heat of formation + Delta-G solvation = -42.749379 kcal Electronic energy + Delta-G solvation = -22945.240757 eV Core-core repulsion = 19667.949706 eV Total energy + Delta-G solvation = -3277.291051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74266 -39.96375 -37.72218 -36.13332 -34.87909 -34.39763 -32.59941 -31.07807 -28.86333 -28.09473 -27.65326 -27.18194 -25.43418 -22.86073 -22.08093 -21.73064 -20.75223 -18.96841 -18.19476 -17.80682 -17.20190 -16.82235 -16.63387 -16.30561 -15.72534 -15.31425 -14.91920 -14.79774 -14.37310 -14.20805 -14.00786 -13.87420 -13.69210 -13.37036 -13.32768 -13.12755 -13.01877 -12.91206 -12.80342 -12.69824 -12.57067 -12.42195 -12.24564 -12.04802 -11.99966 -11.94943 -11.19835 -11.16252 -10.74793 -10.52562 -9.50178 -9.23171 -9.05229 -8.10648 -6.32289 0.28545 0.41662 1.36840 1.39023 1.46239 1.52578 1.94692 2.37933 2.80440 3.10752 3.54925 3.61116 3.90341 3.91432 4.19876 4.23040 4.34975 4.39306 4.42175 4.49710 4.69006 4.73955 4.78727 4.85370 4.88489 4.88707 4.93165 4.95563 5.10357 5.14536 5.21084 5.27497 5.32814 5.38491 5.43553 5.44049 5.62325 5.64758 5.69668 6.01225 6.10231 6.12229 6.24338 6.38043 6.69331 6.90371 7.06048 7.39369 8.87311 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.003544 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.968124 B = 7899.130345 C = 8454.092514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.112 4.112 6 C -0.155 4.155 7 C 0.141 3.859 8 N -0.661 5.661 9 C 0.520 3.480 10 O -0.548 6.548 11 C 0.072 3.928 12 H 0.067 0.933 13 C -0.124 4.124 14 N -0.674 5.674 15 C 0.216 3.784 16 H 0.019 0.981 17 C -0.117 4.117 18 C -0.565 4.565 19 H 0.043 0.957 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.949 3.051 23 H -0.278 1.278 24 H -0.278 1.278 25 H -0.272 1.272 26 C -0.160 4.160 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.425 0.575 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.333 0.667 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.028 0.972 43 H 0.265 0.735 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 13.381 10.193 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.162 4.162 4 C -0.075 4.075 5 C -0.168 4.168 6 C -0.176 4.176 7 C 0.047 3.953 8 N -0.307 5.307 9 C 0.309 3.691 10 O -0.424 6.424 11 C -0.042 4.042 12 H 0.085 0.915 13 C -0.182 4.182 14 N -0.307 5.307 15 C 0.107 3.893 16 H 0.037 0.963 17 C -0.176 4.176 18 C -0.604 4.604 19 H 0.061 0.939 20 C -0.175 4.175 21 N -0.546 5.546 22 Si 0.775 3.225 23 H -0.203 1.203 24 H -0.204 1.204 25 H -0.198 1.198 26 C -0.181 4.181 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.152 0.848 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.310 13.851 10.290 23.068 hybrid contribution -0.530 -1.284 -1.644 2.152 sum -15.840 12.567 8.646 21.990 Atomic orbital electron populations 1.20833 0.88553 1.04077 1.03154 1.20075 0.97634 0.91971 0.97112 1.21187 0.92884 0.98782 1.03308 1.20075 0.94594 0.95115 0.97735 1.20816 0.99928 0.93272 1.02805 1.21040 0.99999 0.91918 1.04621 1.17968 0.91706 0.85537 1.00136 1.43425 1.20335 1.12833 1.54143 1.21147 0.81010 0.89851 0.77137 1.90651 1.70207 1.40648 1.40931 1.21450 0.91421 0.92897 0.98403 0.91535 1.21704 1.02636 1.02379 0.91475 1.60941 1.26274 1.15328 1.28118 1.19013 0.92300 0.85002 0.92954 0.96294 1.21551 0.97558 1.00601 0.97873 1.22054 1.23385 1.04619 1.10350 0.93923 1.25600 0.95392 0.96403 1.00070 1.69969 1.32009 1.11954 1.40647 0.85763 0.78980 0.77508 0.80289 1.20333 1.20355 1.19763 1.20996 0.91101 0.99845 1.06122 0.90501 0.90459 0.89921 0.83564 0.90974 0.89179 0.91998 0.87329 0.73610 0.89381 0.92089 0.92283 0.84843 0.91800 0.96044 0.95250 0.92586 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.24 0.71 -0.59 16 2 C -0.07 -1.28 5.88 -19.88 -0.12 -1.40 16 3 C -0.14 -2.82 9.35 22.29 0.21 -2.61 16 4 C -0.07 -1.79 5.88 -19.89 -0.12 -1.91 16 5 C -0.11 -2.11 10.01 71.24 0.71 -1.40 16 6 C -0.16 -4.65 8.31 22.39 0.19 -4.46 16 7 C 0.14 3.88 6.29 38.15 0.24 4.12 16 8 N -0.66 -17.94 5.15 -303.51 -1.56 -19.50 16 9 C 0.52 18.40 6.93 87.66 0.61 19.00 16 10 O -0.55 -23.34 13.31 -3.02 -0.04 -23.38 16 11 C 0.07 2.66 2.84 44.17 0.13 2.78 16 12 H 0.07 2.60 7.65 -2.39 -0.02 2.58 16 13 C -0.12 -3.71 9.31 71.98 0.67 -3.04 16 14 N -0.67 -30.31 5.92 -477.16 -2.82 -33.13 16 15 C 0.22 10.96 2.40 44.17 0.11 11.06 16 16 H 0.02 1.03 7.07 -2.39 -0.02 1.01 16 17 C -0.12 -5.93 9.34 71.98 0.67 -5.25 16 18 C -0.57 -31.13 8.27 25.60 0.21 -30.92 16 19 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 20 C 0.03 1.43 5.30 84.66 0.45 1.88 16 21 N -0.91 -51.22 11.30 21.45 0.24 -50.98 16 22 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 C -0.16 -3.52 9.62 22.39 0.22 -3.30 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 29 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.21 8.08 -2.39 -0.02 1.20 16 33 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.11 3.80 6.38 -2.91 -0.02 3.78 16 35 H 0.43 8.49 8.35 -92.71 -0.77 7.72 16 36 H 0.09 1.91 7.56 -2.39 -0.02 1.89 16 37 H 0.06 1.96 7.41 -2.39 -0.02 1.94 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.33 16.16 7.17 -89.69 -0.64 15.51 16 40 H 0.06 3.48 5.99 -2.39 -0.01 3.46 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 44 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.66 359.06 2.31 -64.35 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.41 Total: 33.18 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.88 Total: -16.03 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.15 Total: -103.62 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.04 Total: -23.38 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.66 2.31 -64.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.603 kcal (2) G-P(sol) polarization free energy of solvation -66.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds