Wall clock time and date at job start Fri Apr 10 2020 19:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38290 * 119.96297 * 2 1 4 4 C 1.38284 * 120.15391 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.96606 * 180.02562 * 4 3 2 6 6 C 1.38105 * 120.07205 * 0.02562 * 4 3 2 7 7 C 1.38915 * 119.92799 * 359.97438 * 6 4 3 8 8 N 1.39666 * 120.07686 * 179.72641 * 7 6 4 9 9 N 1.40103 * 120.00070 * 180.02562 * 8 7 6 10 10 C 1.34781 * 120.00078 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99833 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00079 * 179.97438 * 10 9 8 13 13 C 1.53000 * 109.47489 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47181 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.47061 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47370 * 179.97438 * 15 14 13 17 17 H 1.08011 * 119.99915 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00262 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00163 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46819 * 120.00353 * 20 18 16 23 23 H 1.48505 * 109.47303 * 240.00446 * 20 18 16 24 24 C 1.38103 * 119.96762 * 179.97438 * 2 1 3 25 25 H 1.08991 * 109.47137 * 89.99787 * 1 2 3 26 26 H 1.08997 * 109.46993 * 209.99935 * 1 2 3 27 27 H 1.08996 * 109.47132 * 329.99369 * 1 2 3 28 28 H 1.07997 * 119.92189 * 359.96439 * 3 2 1 29 29 H 1.09001 * 109.47021 * 269.98337 * 5 4 3 30 30 H 1.08998 * 109.47166 * 29.98018 * 5 4 3 31 31 H 1.09001 * 109.47303 * 149.98211 * 5 4 3 32 32 H 1.07996 * 120.04076 * 179.97438 * 6 4 3 33 33 H 0.97002 * 120.00635 * 359.97438 * 8 7 6 34 34 H 0.96999 * 120.00105 * 359.97438 * 9 8 7 35 35 H 1.08999 * 109.47298 * 300.00266 * 12 10 9 36 36 H 1.09009 * 109.47108 * 59.99500 * 12 10 9 37 37 H 1.08994 * 109.46925 * 300.00435 * 13 12 10 38 38 H 1.09004 * 109.46614 * 59.99989 * 13 12 10 39 39 H 1.09002 * 109.47313 * 299.99721 * 14 13 12 40 40 H 1.08996 * 109.47596 * 60.00114 * 14 13 12 41 41 H 1.09002 * 109.46506 * 299.99820 * 15 14 13 42 42 H 1.09004 * 109.46997 * 59.99724 * 15 14 13 43 43 H 0.97005 * 120.00248 * 179.97438 * 19 18 16 44 44 H 1.08007 * 120.03246 * 0.03791 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5805 1.2027 0.0005 5 6 4.3288 2.5107 0.0011 6 6 4.2765 0.0098 0.0005 7 6 3.5859 -1.1955 0.0005 8 7 4.2866 -2.4036 -0.0052 9 7 3.5886 -3.6184 -0.0058 10 6 4.2648 -4.7843 -0.0108 11 8 5.4776 -4.7818 -0.0154 12 6 3.5139 -6.0908 -0.0108 13 6 4.5104 -7.2518 -0.0177 14 6 3.7480 -8.5782 -0.0183 15 6 4.7446 -9.7393 -0.0246 16 6 3.9937 -11.0458 -0.0245 17 1 2.9136 -11.0480 -0.0201 18 6 4.6854 -12.2385 -0.0302 19 7 6.0005 -12.2359 -0.0352 20 14 3.7547 -13.8581 -0.0295 21 1 2.2941 -13.5897 -0.0229 22 1 4.1096 -14.6335 -1.2453 23 1 4.1204 -14.6387 1.1798 24 6 2.1968 -1.1964 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6558 2.1323 -0.0006 29 1 4.5099 2.8261 -1.0264 30 1 3.7364 3.2680 0.5146 31 1 5.2814 2.3841 0.5156 32 1 5.3564 0.0140 0.0005 33 1 5.2566 -2.4018 -0.0096 34 1 2.6186 -3.6203 -0.0017 35 1 2.8907 -6.1517 0.8814 36 1 2.8839 -6.1479 -0.8986 37 1 5.1332 -7.1906 -0.9100 38 1 5.1406 -7.1949 0.8699 39 1 3.1249 -8.6396 0.8739 40 1 3.1181 -8.6349 -0.9060 41 1 5.3680 -9.6781 -0.9166 42 1 5.3742 -9.6824 0.8634 43 1 6.4873 -13.0750 -0.0388 44 1 1.6568 -2.1318 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806402159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:43:33 Heat of formation + Delta-G solvation = -10.784914 kcal Electronic energy + Delta-G solvation = -21394.142621 eV Core-core repulsion = 18118.237654 eV Total energy + Delta-G solvation = -3275.904968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35964 -39.44001 -36.41561 -34.91957 -33.83921 -32.92344 -32.49505 -30.11258 -28.76887 -27.39412 -27.05368 -25.52122 -22.71494 -22.05846 -21.18359 -20.29439 -20.02801 -17.99062 -17.50229 -16.35127 -16.18963 -15.87314 -15.76987 -15.26790 -14.58760 -14.48769 -14.15161 -14.07009 -13.75305 -13.53251 -13.21924 -13.02158 -12.83188 -12.66473 -12.26772 -12.25450 -11.76470 -11.74022 -11.62225 -11.29090 -11.26572 -11.01954 -10.59309 -10.50818 -10.45728 -10.09182 -9.64899 -9.45796 -9.27263 -9.00095 -8.88507 -8.32092 -7.46215 -5.96585 -3.99119 1.08631 1.27691 1.77736 2.53985 3.32390 3.39646 3.43438 3.50936 3.97195 4.44701 4.47495 4.48757 4.63070 4.87313 4.97205 5.05392 5.10951 5.19401 5.25387 5.25874 5.30140 5.30891 5.38953 5.44127 5.56561 5.62754 5.73315 5.79673 6.01474 6.07489 6.21670 6.27123 6.40892 6.44932 6.48375 6.76221 6.78954 6.97247 7.14887 7.18003 7.51021 7.72694 7.87765 8.04515 8.19694 8.46222 9.08757 9.64684 11.14751 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038172 B = 0.002014 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.336956 B =13899.360127 C =14591.036163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.182 4.182 4 C -0.030 4.030 5 C -0.116 4.116 6 C -0.198 4.198 7 C 0.229 3.771 8 N -0.544 5.544 9 N -0.532 5.532 10 C 0.511 3.489 11 O -0.535 6.535 12 C -0.128 4.128 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.433 0.567 34 H 0.420 0.580 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 30.032 0.044 31.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.030 4.030 5 C -0.172 4.172 6 C -0.222 4.222 7 C 0.125 3.875 8 N -0.270 5.270 9 N -0.279 5.279 10 C 0.298 3.702 11 O -0.409 6.409 12 C -0.169 4.169 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.232 4.232 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.276 0.724 34 H 0.262 0.738 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.827 29.700 0.043 30.984 hybrid contribution -0.490 -0.996 -0.009 1.110 sum -9.317 28.704 0.033 30.178 Atomic orbital electron populations 1.20823 0.91164 1.02871 1.02480 1.19593 0.95702 0.92370 0.95401 1.20661 0.93325 0.97332 1.08855 1.19569 0.93580 0.94331 0.95565 1.20816 0.99995 0.93964 1.02462 1.20273 0.99580 0.90011 1.12340 1.17706 0.91490 0.84036 0.94318 1.43420 1.06595 0.93928 1.83008 1.45182 1.08270 0.96927 1.77561 1.21448 0.88867 0.84050 0.75814 1.90729 1.13965 1.87010 1.49237 1.21767 1.00221 0.90352 1.04548 1.21480 0.96941 0.92470 1.03209 1.21656 0.99140 0.93785 1.00220 1.19105 0.94045 0.91283 0.97365 1.21315 0.93027 0.91160 1.50339 0.92668 1.25048 0.94848 0.99276 0.95460 1.69981 1.05990 1.26487 1.50964 0.86550 0.80056 0.83911 0.77549 1.19775 1.21055 1.21049 1.20258 0.91685 0.98116 1.13184 0.90942 0.91461 0.91394 0.86377 0.90964 0.91406 0.91443 0.85911 0.72395 0.73830 0.88592 0.88596 0.91607 0.91602 0.93341 0.93336 0.96552 0.96553 0.93086 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.03 -0.25 5.88 -104.65 -0.62 -0.86 16 3 C -0.18 -1.47 9.35 -39.55 -0.37 -1.84 16 4 C -0.03 -0.24 5.88 -104.66 -0.62 -0.86 16 5 C -0.12 -0.67 10.01 36.00 0.36 -0.30 16 6 C -0.20 -1.82 9.55 -39.38 -0.38 -2.19 16 7 C 0.23 2.29 6.72 -83.79 -0.56 1.73 16 8 N -0.54 -5.93 6.45 32.41 0.21 -5.72 16 9 N -0.53 -5.64 6.22 31.22 0.19 -5.45 16 10 C 0.51 6.88 7.95 -10.99 -0.09 6.79 16 11 O -0.54 -9.42 15.82 5.55 0.09 -9.33 16 12 C -0.13 -1.58 5.70 -27.89 -0.16 -1.74 16 13 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 14 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.21 -1.90 9.13 -39.38 -0.36 -2.26 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.43 4.89 8.01 -182.59 -1.46 3.43 16 34 H 0.42 3.27 6.61 -182.60 -1.21 2.06 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.12 0.87 6.20 -52.48 -0.33 0.54 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -34.09 368.66 -10.75 -44.85 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -9.28 Total: -0.56 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.23 Total: -19.46 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 1.14 Total: -37.88 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.09 -10.75 -44.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806402159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.064 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds