Wall clock time and date at job start Fri Apr 10 2020 19:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38290 * 119.96297 * 2 1 4 4 C 1.38284 * 120.15391 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.96606 * 180.02562 * 4 3 2 6 6 C 1.38105 * 120.07205 * 0.02562 * 4 3 2 7 7 C 1.38915 * 119.92799 * 359.97438 * 6 4 3 8 8 N 1.39666 * 120.07686 * 179.72641 * 7 6 4 9 9 N 1.40103 * 120.00070 * 180.02562 * 8 7 6 10 10 C 1.34781 * 120.00078 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99833 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00079 * 179.97438 * 10 9 8 13 13 C 1.53000 * 109.47489 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47181 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.47061 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47370 * 179.97438 * 15 14 13 17 17 H 1.08011 * 119.99915 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00262 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00163 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46819 * 120.00353 * 20 18 16 23 23 H 1.48505 * 109.47303 * 240.00446 * 20 18 16 24 24 C 1.38103 * 119.96762 * 179.97438 * 2 1 3 25 25 H 1.08991 * 109.47137 * 89.99787 * 1 2 3 26 26 H 1.08997 * 109.46993 * 209.99935 * 1 2 3 27 27 H 1.08996 * 109.47132 * 329.99369 * 1 2 3 28 28 H 1.07997 * 119.92189 * 359.96439 * 3 2 1 29 29 H 1.09001 * 109.47021 * 269.98337 * 5 4 3 30 30 H 1.08998 * 109.47166 * 29.98018 * 5 4 3 31 31 H 1.09001 * 109.47303 * 149.98211 * 5 4 3 32 32 H 1.07996 * 120.04076 * 179.97438 * 6 4 3 33 33 H 0.97002 * 120.00635 * 359.97438 * 8 7 6 34 34 H 0.96999 * 120.00105 * 359.97438 * 9 8 7 35 35 H 1.08999 * 109.47298 * 300.00266 * 12 10 9 36 36 H 1.09009 * 109.47108 * 59.99500 * 12 10 9 37 37 H 1.08994 * 109.46925 * 300.00435 * 13 12 10 38 38 H 1.09004 * 109.46614 * 59.99989 * 13 12 10 39 39 H 1.09002 * 109.47313 * 299.99721 * 14 13 12 40 40 H 1.08996 * 109.47596 * 60.00114 * 14 13 12 41 41 H 1.09002 * 109.46506 * 299.99820 * 15 14 13 42 42 H 1.09004 * 109.46997 * 59.99724 * 15 14 13 43 43 H 0.97005 * 120.00248 * 179.97438 * 19 18 16 44 44 H 1.08007 * 120.03246 * 0.03791 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5805 1.2027 0.0005 5 6 4.3288 2.5107 0.0011 6 6 4.2765 0.0098 0.0005 7 6 3.5859 -1.1955 0.0005 8 7 4.2866 -2.4036 -0.0052 9 7 3.5886 -3.6184 -0.0058 10 6 4.2648 -4.7843 -0.0108 11 8 5.4776 -4.7818 -0.0154 12 6 3.5139 -6.0908 -0.0108 13 6 4.5104 -7.2518 -0.0177 14 6 3.7480 -8.5782 -0.0183 15 6 4.7446 -9.7393 -0.0246 16 6 3.9937 -11.0458 -0.0245 17 1 2.9136 -11.0480 -0.0201 18 6 4.6854 -12.2385 -0.0302 19 7 6.0005 -12.2359 -0.0352 20 14 3.7547 -13.8581 -0.0295 21 1 2.2941 -13.5897 -0.0229 22 1 4.1096 -14.6335 -1.2453 23 1 4.1204 -14.6387 1.1798 24 6 2.1968 -1.1964 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6558 2.1323 -0.0006 29 1 4.5099 2.8261 -1.0264 30 1 3.7364 3.2680 0.5146 31 1 5.2814 2.3841 0.5156 32 1 5.3564 0.0140 0.0005 33 1 5.2566 -2.4018 -0.0096 34 1 2.6186 -3.6203 -0.0017 35 1 2.8907 -6.1517 0.8814 36 1 2.8839 -6.1479 -0.8986 37 1 5.1332 -7.1906 -0.9100 38 1 5.1406 -7.1949 0.8699 39 1 3.1249 -8.6396 0.8739 40 1 3.1181 -8.6349 -0.9060 41 1 5.3680 -9.6781 -0.9166 42 1 5.3742 -9.6824 0.8634 43 1 6.4873 -13.0750 -0.0388 44 1 1.6568 -2.1318 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806402159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:43:32 Heat of formation + Delta-G solvation = -30.788037 kcal Electronic energy + Delta-G solvation = -21395.010022 eV Core-core repulsion = 18118.237654 eV Total energy + Delta-G solvation = -3276.772368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23329 -40.27441 -37.33367 -36.54732 -34.64914 -34.38856 -33.59625 -31.57717 -29.75107 -27.96981 -27.74521 -27.13643 -24.33037 -22.79072 -22.23054 -21.60763 -21.09771 -18.82119 -18.49776 -18.35398 -17.01184 -17.00885 -16.61227 -16.49064 -15.93689 -15.72736 -15.20612 -15.00905 -14.55733 -14.31930 -14.04317 -13.95732 -13.81374 -13.61293 -13.50596 -13.31514 -13.26124 -12.85165 -12.72229 -12.32839 -12.28422 -12.16341 -12.15920 -11.99545 -11.86656 -11.39826 -11.37000 -11.21428 -10.95438 -10.55436 -10.23628 -9.50305 -8.24651 -8.18657 -6.30511 0.45171 0.59854 0.92775 1.40798 1.41520 1.51877 1.54987 2.41947 2.86444 3.09611 3.14327 3.70798 3.86897 3.94472 4.01183 4.13963 4.25323 4.43481 4.50756 4.56545 4.63319 4.67743 4.72937 4.81700 4.85320 4.86569 4.89893 4.90463 5.01703 5.16939 5.18435 5.25363 5.33281 5.37889 5.42498 5.56558 5.59648 5.74101 5.79129 5.79412 5.89015 6.07441 6.25679 6.31691 6.67202 6.88552 7.26939 7.39164 8.93734 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038172 B = 0.002014 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.336956 B =13899.360127 C =14591.036163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.038 4.038 3 C -0.187 4.187 4 C -0.038 4.038 5 C -0.115 4.115 6 C -0.212 4.212 7 C 0.210 3.790 8 N -0.554 5.554 9 N -0.513 5.513 10 C 0.510 3.490 11 O -0.586 6.586 12 C -0.116 4.116 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.220 4.220 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.428 0.572 34 H 0.435 0.565 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.063 0.937 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.262 0.738 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 31.019 0.060 33.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.038 4.038 3 C -0.207 4.207 4 C -0.038 4.038 5 C -0.171 4.171 6 C -0.236 4.236 7 C 0.108 3.892 8 N -0.280 5.280 9 N -0.261 5.261 10 C 0.298 3.702 11 O -0.465 6.465 12 C -0.157 4.157 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.243 4.243 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.270 0.730 34 H 0.280 0.720 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.034 30.741 0.059 33.012 hybrid contribution 0.493 -1.181 -0.016 1.280 sum -11.540 29.559 0.044 31.732 Atomic orbital electron populations 1.20868 0.89373 1.03749 1.03201 1.19947 0.97123 0.92120 0.94658 1.20994 0.93466 0.98193 1.08077 1.19906 0.94064 0.94956 0.94921 1.20859 1.00078 0.93019 1.03158 1.20493 1.00077 0.90324 1.12663 1.17927 0.92093 0.83794 0.95393 1.43508 1.06524 0.94097 1.83862 1.44937 1.08883 0.96477 1.75789 1.21556 0.88205 0.85043 0.75374 1.90717 1.16113 1.87694 1.51952 1.21632 0.98943 0.87512 1.07569 1.21256 0.97455 0.93425 1.01286 1.21448 0.97820 0.92470 1.01598 1.19077 0.94752 0.93853 0.94354 1.21798 0.93803 0.92196 1.49975 0.91457 1.26100 0.95780 1.03782 0.94886 1.70137 1.07994 1.27716 1.52018 0.85333 0.79238 0.78445 0.77614 1.18015 1.20565 1.20559 1.20513 0.91398 0.99203 1.13162 0.90184 0.90826 0.90343 0.84605 0.90218 0.90169 0.91146 0.85528 0.73007 0.72026 0.85489 0.85493 0.93684 0.93683 0.91811 0.91802 0.99693 0.99695 0.92903 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.01 71.23 0.71 -0.34 16 2 C -0.04 -0.55 5.88 -19.89 -0.12 -0.67 16 3 C -0.19 -2.70 9.35 22.29 0.21 -2.49 16 4 C -0.04 -0.58 5.88 -19.89 -0.12 -0.69 16 5 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 6 C -0.21 -3.81 9.55 22.40 0.21 -3.60 16 7 C 0.21 4.09 6.72 38.22 0.26 4.35 16 8 N -0.55 -11.95 6.45 -51.37 -0.33 -12.29 16 9 N -0.51 -10.25 6.22 -173.53 -1.08 -11.33 16 10 C 0.51 13.38 7.95 87.65 0.70 14.07 16 11 O -0.59 -21.23 15.82 -3.04 -0.05 -21.28 16 12 C -0.12 -2.61 5.70 29.85 0.17 -2.44 16 13 C -0.10 -3.32 4.50 30.59 0.14 -3.18 16 14 C -0.10 -3.78 5.15 30.60 0.16 -3.63 16 15 C 0.02 0.91 4.97 29.85 0.15 1.06 16 16 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 17 H 0.07 3.62 7.74 -2.90 -0.02 3.60 16 18 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 19 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 20 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 C -0.22 -3.66 9.13 22.40 0.20 -3.46 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 27 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.43 10.01 8.01 -213.32 -1.71 8.30 16 34 H 0.44 5.75 6.61 -213.32 -1.41 4.34 16 35 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 43 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.13 1.65 6.20 -2.91 -0.02 1.63 16 Total: -1.00 -76.25 368.66 2.81 -73.44 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -2.13 Total: 15.74 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 4.08 Total: -32.32 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.13 Total: -82.31 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -76.25 2.81 -73.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806402159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.653 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds