Wall clock time and date at job start Fri Apr 10 2020 19:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38298 * 119.96274 * 2 1 4 4 C 1.38265 * 120.14966 * 180.02562 * 3 2 1 5 5 C 1.38124 * 120.07454 * 0.02562 * 4 3 2 6 6 C 1.38886 * 119.92347 * 359.97438 * 5 4 3 7 7 N 1.39679 * 120.07193 * 179.97438 * 6 5 4 8 8 C 1.46957 * 111.00236 * 359.97438 * 7 6 5 9 9 C 1.53044 * 109.36578 * 183.18932 * 8 7 6 10 10 N 1.46954 * 109.36432 * 301.59940 * 9 8 7 11 11 C 1.46905 * 111.00068 * 183.18970 * 10 9 8 12 12 C 1.53000 * 109.47123 * 170.00229 * 11 10 9 13 13 H 1.09002 * 109.47398 * 59.99875 * 12 11 10 14 14 O 1.42903 * 109.46726 * 299.99631 * 12 11 10 15 15 C 1.50699 * 109.47083 * 179.97438 * 12 11 10 16 16 H 1.08000 * 119.99792 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47256 * 90.00491 * 19 17 15 21 21 H 1.48506 * 109.46930 * 210.00332 * 19 17 15 22 22 H 1.48499 * 109.47104 * 330.00193 * 19 17 15 23 23 C 1.46957 * 110.88264 * 59.32245 * 10 9 8 24 24 C 1.46954 * 110.99993 * 123.80082 * 7 6 5 25 25 C 1.38085 * 119.95902 * 180.27444 * 2 1 3 26 26 H 1.09008 * 109.46910 * 90.00293 * 1 2 3 27 27 H 1.09003 * 109.46904 * 209.99928 * 1 2 3 28 28 H 1.08992 * 109.47200 * 330.00339 * 1 2 3 29 29 H 1.08004 * 119.93090 * 0.04041 * 3 2 1 30 30 H 1.08003 * 119.96374 * 179.97438 * 4 3 2 31 31 H 1.08004 * 120.03720 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.48575 * 63.22071 * 8 7 6 33 33 H 1.09002 * 109.50384 * 303.16656 * 8 7 6 34 34 H 1.09002 * 109.48962 * 181.63181 * 9 8 7 35 35 H 1.09004 * 109.50754 * 61.58009 * 9 8 7 36 36 H 1.08992 * 109.47078 * 49.99916 * 11 10 9 37 37 H 1.09004 * 109.46829 * 289.99562 * 11 10 9 38 38 H 0.96700 * 114.00234 * 300.00043 * 14 12 11 39 39 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.49243 * 60.64652 * 23 10 9 41 41 H 1.08999 * 109.48907 * 180.71293 * 23 10 9 42 42 H 1.09000 * 109.49338 * 296.77778 * 24 7 6 43 43 H 1.09002 * 109.48899 * 56.84217 * 24 7 6 44 44 H 1.08001 * 120.04318 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0096 -0.0016 6 6 3.5859 -1.1954 -0.0016 7 7 4.2867 -2.4037 -0.0032 8 6 5.7377 -2.1710 -0.0054 9 6 6.4670 -3.5140 -0.0874 10 7 6.0727 -4.3530 1.0529 11 6 6.8098 -5.6238 1.0512 12 6 6.5640 -6.3576 2.3710 13 1 5.4981 -6.5559 2.4836 14 8 7.0151 -5.5468 3.4579 15 6 7.3196 -7.6615 2.3690 16 1 7.9151 -7.9392 1.5119 17 6 7.2506 -8.4999 3.4614 18 7 6.5250 -8.1620 4.5050 19 14 8.1878 -10.1159 3.4592 20 1 9.5452 -9.9016 4.0219 21 1 7.4602 -11.1111 4.2871 22 1 8.3028 -10.6194 2.0669 23 6 4.6217 -4.5858 1.0550 24 6 3.8920 -3.2429 1.1367 25 6 2.1966 -1.1963 -0.0057 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6560 2.1325 0.0007 30 1 4.1168 2.1401 -0.0010 31 1 5.3565 0.0139 -0.0024 32 1 6.0249 -1.6567 0.9118 33 1 6.0067 -1.5580 -0.8656 34 1 7.5435 -3.3456 -0.0599 35 1 6.2012 -4.0163 -1.0176 36 1 7.8756 -5.4255 0.9386 37 1 6.4656 -6.2422 0.2221 38 1 7.9569 -5.3304 3.4227 39 1 6.4762 -8.7520 5.2733 40 1 4.3345 -5.1001 0.1379 41 1 4.3530 -5.1986 1.9154 42 1 4.1578 -2.7411 2.0671 43 1 2.8155 -3.4114 1.1088 44 1 1.6567 -2.1317 -0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:43:40 Heat of formation + Delta-G solvation = -10.034587 kcal Electronic energy + Delta-G solvation = -23142.963241 eV Core-core repulsion = 19867.090810 eV Total energy + Delta-G solvation = -3275.872431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36770 -38.37600 -36.23106 -34.45402 -32.59691 -32.07282 -30.95093 -30.29514 -28.34216 -26.97895 -26.02791 -23.86621 -23.64603 -21.72258 -21.23656 -20.17838 -19.39734 -17.39760 -16.89652 -15.85841 -15.66364 -14.97503 -14.82621 -14.67639 -14.54850 -14.29643 -14.01357 -13.78968 -13.76033 -13.45848 -13.31076 -13.00922 -12.54294 -12.34314 -12.02874 -11.81532 -11.53128 -11.33963 -11.14097 -11.09882 -10.94913 -10.92078 -10.84948 -10.58139 -10.38568 -10.02543 -9.65903 -8.97628 -8.78463 -8.57153 -8.11197 -7.81628 -7.67509 -6.00610 -4.18990 1.30758 1.36284 3.27239 3.34353 3.36744 3.56190 3.89216 4.28571 4.46742 4.71298 4.77293 4.93689 5.06249 5.19193 5.22172 5.25829 5.27643 5.30315 5.43085 5.44472 5.53143 5.58830 5.62794 5.69062 5.81039 5.85654 5.96884 6.03986 6.06699 6.18127 6.21297 6.28617 6.36407 6.40360 6.53381 6.55030 6.74440 6.80647 7.02131 7.30640 7.49813 7.58754 7.77277 7.87016 8.20086 8.84882 9.46287 9.62495 11.03466 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.034607 B = 0.003029 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.894746 B = 9240.953143 C = 9609.059873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.155 4.155 4 C -0.091 4.091 5 C -0.179 4.179 6 C 0.125 3.875 7 N -0.493 5.493 8 C 0.056 3.944 9 C 0.054 3.946 10 N -0.528 5.528 11 C 0.031 3.969 12 C 0.237 3.763 13 H 0.054 0.946 14 O -0.554 6.554 15 C -0.575 4.575 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.056 3.944 24 C 0.065 3.935 25 C -0.143 4.143 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.342 0.658 39 H 0.260 0.740 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 16.697 -9.740 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.065 4.065 3 C -0.174 4.174 4 C -0.109 4.109 5 C -0.200 4.200 6 C 0.026 3.974 7 N -0.207 5.207 8 C -0.071 4.071 9 C -0.075 4.075 10 N -0.252 5.252 11 C -0.096 4.096 12 C 0.179 3.821 13 H 0.072 0.928 14 O -0.356 6.356 15 C -0.613 4.613 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.072 4.072 24 C -0.061 4.061 25 C -0.164 4.164 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.185 0.815 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.319 16.490 -9.365 20.708 hybrid contribution 1.174 -1.022 -0.431 1.615 sum -7.145 15.467 -9.796 19.653 Atomic orbital electron populations 1.20791 0.91275 1.02731 1.02247 1.19748 0.95838 0.92803 0.98089 1.20886 0.94191 0.97252 1.05039 1.20953 0.94178 0.97488 0.98319 1.21313 1.00210 0.91944 1.06496 1.19022 0.92928 0.89087 0.96339 1.59243 1.06377 1.13344 1.41787 1.22337 0.85540 0.97812 1.01369 1.22169 0.99299 0.93086 0.92965 1.62201 1.04745 1.17844 1.40451 1.23084 0.97104 0.88024 1.01381 1.19315 0.95930 0.86592 0.80247 0.92838 1.86557 1.26604 1.72478 1.49946 1.21652 1.32103 1.04842 1.02702 0.92757 1.25021 0.94632 0.97605 0.95379 1.70079 1.37868 1.36258 1.05187 0.86679 0.80081 0.83597 0.78032 1.20517 1.21121 1.19903 1.22189 0.88100 0.95242 1.01665 1.22329 0.99734 0.93564 0.90429 1.20662 0.92306 0.97937 1.05465 0.91216 0.91491 0.91615 0.86516 0.86274 0.85620 0.92675 0.90229 0.90330 0.94706 0.91780 0.95437 0.81460 0.92997 0.94686 0.88781 0.92736 0.90112 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.06 -0.69 5.88 -104.65 -0.62 -1.30 16 3 C -0.15 -1.58 9.70 -39.55 -0.38 -1.96 16 4 C -0.09 -0.95 10.04 -39.61 -0.40 -1.35 16 5 C -0.18 -2.13 8.82 -39.38 -0.35 -2.48 16 6 C 0.12 1.64 5.63 -83.79 -0.47 1.17 16 7 N -0.49 -6.93 4.75 -170.96 -0.81 -7.74 16 8 C 0.06 0.75 4.30 -3.77 -0.02 0.74 16 9 C 0.05 0.80 5.61 -3.77 -0.02 0.78 16 10 N -0.53 -9.52 4.58 -234.47 -1.07 -10.59 16 11 C 0.03 0.64 4.56 -3.82 -0.02 0.62 16 12 C 0.24 5.93 2.70 -27.88 -0.08 5.86 16 13 H 0.05 1.47 6.49 -51.93 -0.34 1.13 16 14 O -0.55 -14.35 12.60 -35.23 -0.44 -14.79 16 15 C -0.57 -15.65 8.76 -34.44 -0.30 -15.95 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 18 N -0.86 -25.29 12.84 55.43 0.71 -24.58 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C 0.06 0.97 5.41 -3.77 -0.02 0.95 16 24 C 0.06 0.96 5.38 -3.77 -0.02 0.94 16 25 C -0.14 -1.75 8.85 -39.38 -0.35 -2.10 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 31 H 0.13 1.37 5.81 -52.48 -0.31 1.06 16 32 H 0.06 0.76 7.58 -51.93 -0.39 0.37 16 33 H 0.08 0.92 7.17 -51.93 -0.37 0.55 16 34 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 37 H 0.03 0.57 8.12 -51.93 -0.42 0.14 16 38 H 0.34 8.00 9.04 45.56 0.41 8.41 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.81 6.34 -51.93 -0.33 1.48 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.07 6.83 -51.93 -0.35 0.72 16 44 H 0.12 1.42 7.20 -52.49 -0.38 1.04 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -30.59 348.25 -10.40 -40.99 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.23 Total: 7.91 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.77 Total: -12.50 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -1.17 Total: -42.91 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.44 Total: -14.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.59 -10.40 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.951 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds