Wall clock time and date at job start Fri Apr 10 2020 19:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47197 * 2 1 4 4 C 1.50708 * 109.46793 * 119.99912 * 2 1 3 5 5 C 1.38281 * 119.53364 * 274.99695 * 4 2 1 6 6 C 1.38482 * 119.24114 * 180.02562 * 5 4 2 7 7 C 1.39339 * 118.35812 * 0.02562 * 6 5 4 8 8 N 1.39754 * 120.49536 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99880 * 32.71997 * 8 7 6 10 10 O 1.21371 * 120.00089 * 5.26522 * 9 8 7 11 11 C 1.49351 * 120.00055 * 185.26874 * 9 8 7 12 12 O 1.21362 * 120.00110 * 359.97438 * 11 9 8 13 13 N 1.34769 * 120.00250 * 179.97438 * 11 9 8 14 14 C 1.46498 * 120.00173 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.47338 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99713 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00498 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47336 * 59.99664 * 19 17 15 21 21 H 1.48497 * 109.47297 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46792 * 299.99950 * 19 17 15 23 23 C 1.38899 * 119.01168 * 0.02562 * 7 6 5 24 24 N 1.31811 * 120.65902 * 359.97438 * 23 7 6 25 25 H 1.09002 * 109.47316 * 300.00581 * 1 2 3 26 26 H 1.09002 * 109.46794 * 59.99960 * 1 2 3 27 27 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47745 * 239.99715 * 2 1 3 29 29 H 1.09005 * 109.47049 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47254 * 299.99701 * 3 2 1 31 31 H 1.08995 * 109.47246 * 60.00157 * 3 2 1 32 32 H 1.08002 * 120.37585 * 0.27907 * 5 4 2 33 33 H 1.08002 * 120.82402 * 180.02562 * 6 5 4 34 34 H 0.96993 * 120.00151 * 212.71365 * 8 7 6 35 35 H 0.96999 * 120.00101 * 359.97438 * 13 11 9 36 36 H 1.08998 * 109.47590 * 300.00195 * 14 13 11 37 37 H 1.09001 * 109.46973 * 60.00220 * 14 13 11 38 38 H 0.96998 * 120.00519 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.67821 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.1606 -0.0112 2.4166 6 6 2.6232 -0.6699 3.5435 7 6 2.9437 -2.0216 3.4352 8 7 3.4149 -2.7298 4.5440 9 6 2.9827 -2.4116 5.7803 10 8 2.1141 -1.5760 5.9232 11 6 3.5726 -3.0871 6.9746 12 8 4.4408 -3.9229 6.8318 13 7 3.1407 -2.7686 8.2108 14 6 3.7190 -3.4316 9.3822 15 6 3.0682 -2.8995 10.6330 16 1 2.3003 -2.1433 10.5623 17 6 3.4531 -3.3780 11.8675 18 7 4.3878 -4.2991 11.9535 19 14 2.6459 -2.7189 13.4178 20 1 1.1862 -2.9870 13.3683 21 1 3.2330 -3.3900 14.6053 22 1 2.8773 -1.2551 13.5123 23 6 2.7888 -2.6544 2.2085 24 7 2.3450 -1.9895 1.1605 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 1.8991 1.0356 2.4646 33 1 2.7329 -0.1488 4.4831 34 1 4.0530 -3.4503 4.4239 35 1 2.4470 -2.1003 8.3251 36 1 3.5488 -4.5060 9.3126 37 1 4.7905 -3.2351 9.4189 38 1 4.6588 -4.6355 12.8220 39 1 3.0343 -3.7017 2.1123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120882861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:46:38 Heat of formation + Delta-G solvation = -68.064211 kcal Electronic energy + Delta-G solvation = -21931.326325 eV Core-core repulsion = 18451.678535 eV Total energy + Delta-G solvation = -3479.647790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32904 -41.14583 -39.66508 -37.29514 -36.38630 -35.47187 -34.38193 -33.19364 -30.59221 -29.67402 -28.02997 -26.66295 -24.98218 -24.74676 -23.54485 -21.67092 -21.29548 -20.35280 -18.77199 -18.36310 -17.69852 -17.38333 -17.09178 -16.96387 -16.69674 -15.97851 -15.70868 -15.40383 -15.20598 -14.94194 -14.77469 -14.26967 -14.08423 -13.99270 -13.83501 -13.58689 -13.06065 -12.90447 -12.82109 -12.71195 -12.34094 -12.24363 -12.10358 -11.87159 -11.78972 -11.56903 -10.98515 -10.84941 -10.75443 -10.36930 -10.08822 -9.38446 -8.32316 -6.48650 -0.28325 0.18319 0.44639 1.16960 1.44241 1.46748 1.55353 2.01830 2.34582 2.60629 2.71389 3.03094 3.25373 3.37499 3.69029 3.77374 3.92660 4.10129 4.20928 4.31439 4.50448 4.56741 4.82889 4.85135 4.94908 4.97124 4.98633 5.04452 5.08358 5.15762 5.22182 5.25349 5.39224 5.43721 5.47884 5.63083 5.75983 5.84454 6.39008 6.54951 6.66334 6.90875 6.95783 7.24308 8.78991 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.002595 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.504553 B =10785.892493 C =11308.967039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.146 4.146 4 C 0.113 3.887 5 C -0.145 4.145 6 C -0.088 4.088 7 C 0.075 3.925 8 N -0.628 5.628 9 C 0.522 3.478 10 O -0.515 6.515 11 C 0.495 3.505 12 O -0.555 6.555 13 N -0.671 5.671 14 C 0.263 3.737 15 C -0.563 4.563 16 H 0.080 0.920 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.087 3.913 24 N -0.480 5.480 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.434 0.566 35 H 0.414 0.586 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.271 0.729 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 10.277 -23.151 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.025 4.025 5 C -0.165 4.165 6 C -0.116 4.116 7 C -0.021 4.021 8 N -0.276 5.276 9 C 0.304 3.696 10 O -0.390 6.390 11 C 0.275 3.725 12 O -0.435 6.435 13 N -0.321 5.321 14 C 0.141 3.859 15 C -0.601 4.601 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.072 4.072 24 N -0.189 5.189 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.274 0.726 35 H 0.250 0.750 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.738 9.709 -23.727 26.271 hybrid contribution 0.171 0.080 1.987 1.996 sum -5.566 9.789 -21.740 24.483 Atomic orbital electron populations 1.21800 0.93008 1.01808 1.03096 1.20098 0.96588 0.96100 0.93447 1.21930 1.01175 0.93724 1.03496 1.21712 0.95054 0.89817 0.95926 1.22130 1.00026 1.02751 0.91621 1.21758 0.97116 0.92471 1.00258 1.18955 1.02321 0.92389 0.88405 1.42935 1.44766 1.36582 1.03289 1.20126 0.82118 0.82785 0.84534 1.90744 1.29486 1.32623 1.86133 1.20109 0.83689 0.83732 0.85019 1.90730 1.32248 1.34148 1.86397 1.46153 1.39586 1.41137 1.05261 1.18844 0.93320 0.92109 0.81591 1.21534 1.23067 1.24579 0.90909 0.90193 1.25955 0.95289 0.94733 1.03004 1.70085 1.30459 1.29153 1.26572 0.85250 0.78716 0.78738 0.76818 1.18900 1.20802 1.18848 1.22913 0.96877 1.00896 0.86551 1.67561 1.11242 1.09472 1.30602 0.92384 0.90021 0.93632 0.89461 0.92672 0.90216 0.91455 0.81937 0.84413 0.72617 0.74994 0.97602 0.97590 0.92021 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.17 71.98 0.66 -1.06 16 2 C -0.04 -0.60 3.23 -11.54 -0.04 -0.63 16 3 C -0.15 -1.42 8.62 71.98 0.62 -0.80 16 4 C 0.11 2.20 5.79 42.57 0.25 2.44 16 5 C -0.15 -2.79 9.16 22.34 0.20 -2.58 16 6 C -0.09 -2.10 8.77 22.59 0.20 -1.90 16 7 C 0.08 1.80 6.31 38.30 0.24 2.04 16 8 N -0.63 -15.95 5.34 -304.53 -1.63 -17.57 16 9 C 0.52 16.68 7.65 87.24 0.67 17.35 16 10 O -0.52 -17.51 14.16 -3.31 -0.05 -17.56 16 11 C 0.49 19.32 7.89 87.24 0.69 20.01 16 12 O -0.56 -24.20 16.48 -3.28 -0.05 -24.25 16 13 N -0.67 -28.62 5.54 -468.25 -2.59 -31.22 16 14 C 0.26 13.82 5.43 85.63 0.46 14.28 16 15 C -0.56 -30.08 9.28 25.60 0.24 -29.85 16 16 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 17 C 0.01 0.58 5.46 84.66 0.46 1.04 16 18 N -0.92 -53.77 13.29 21.45 0.28 -53.49 16 19 Si 0.98 41.69 29.54 68.60 2.03 43.71 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 C 0.09 1.84 11.12 84.85 0.94 2.79 16 24 N -0.48 -10.68 10.26 -183.32 -1.88 -12.56 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.58 6.48 -2.39 -0.02 0.56 16 32 H 0.16 2.25 6.31 -2.91 -0.02 2.23 16 33 H 0.14 3.53 6.48 -2.91 -0.02 3.51 16 34 H 0.43 9.51 8.30 -92.71 -0.77 8.74 16 35 H 0.41 16.04 7.79 -92.71 -0.72 15.32 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 38 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -66.16 338.26 1.31 -64.85 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.40 Total: 24.94 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 5.60 Total: 23.14 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -5.82 Total: -114.84 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.10 Total: -41.81 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -66.16 1.31 -64.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120882861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.211 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds