Wall clock time and date at job start Fri Apr 10 2020 19:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38145 * 120.02067 * 2 1 4 4 C 1.38445 * 120.04546 * 180.30160 * 3 2 1 5 5 F 1.35100 * 119.95687 * 179.69792 * 4 3 2 6 6 C 1.38498 * 120.08688 * 359.68396 * 4 3 2 7 7 C 1.38097 * 120.04096 * 0.03689 * 6 4 3 8 8 C 1.38816 * 120.02806 * 179.72835 * 2 1 3 9 9 N 1.40063 * 120.04095 * 359.97438 * 8 2 1 10 10 C 1.34774 * 120.00181 * 148.52932 * 9 8 2 11 11 O 1.21590 * 119.99498 * 4.60083 * 10 9 8 12 12 N 1.34779 * 120.00120 * 184.59254 * 10 9 8 13 13 C 1.46501 * 119.99736 * 179.73044 * 12 10 9 14 14 C 1.52997 * 109.46810 * 175.60962 * 13 12 10 15 15 C 1.50700 * 115.55026 * 56.47626 * 14 13 12 16 16 H 1.07994 * 120.00111 * 267.83718 * 15 14 13 17 17 C 1.37879 * 119.99842 * 87.83879 * 15 14 13 18 18 N 1.31511 * 120.00141 * 2.92531 * 17 15 14 19 19 Si 1.86808 * 119.99824 * 182.92389 * 17 15 14 20 20 H 1.48497 * 109.46979 * 90.00024 * 19 17 15 21 21 H 1.48497 * 109.47175 * 210.00460 * 19 17 15 22 22 H 1.48502 * 109.46924 * 330.00070 * 19 17 15 23 23 C 1.52997 * 117.50143 * 270.80185 * 14 13 12 24 24 C 1.53005 * 117.49757 * 202.14169 * 14 13 12 25 25 H 1.08996 * 109.46930 * 270.27296 * 1 2 3 26 26 H 1.09000 * 109.47684 * 30.27356 * 1 2 3 27 27 H 1.09003 * 109.46889 * 150.27319 * 1 2 3 28 28 H 1.08001 * 119.97548 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.97261 * 180.02562 * 6 4 3 30 30 H 1.08000 * 120.01410 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00234 * 328.53306 * 9 8 2 32 32 H 0.96991 * 120.00137 * 0.02562 * 12 10 9 33 33 H 1.09002 * 109.46781 * 295.60996 * 13 12 10 34 34 H 1.08998 * 109.47105 * 55.60971 * 13 12 10 35 35 H 0.97005 * 119.99769 * 185.01401 * 18 17 15 36 36 H 1.09006 * 117.49623 * 0.02562 * 23 14 13 37 37 H 1.09001 * 117.49676 * 145.02117 * 23 14 13 38 38 H 1.09004 * 117.49802 * 214.97823 * 24 14 13 39 39 H 1.08996 * 117.49490 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5826 1.1967 -0.0063 5 9 4.2567 2.3675 -0.0125 6 6 4.2774 -0.0013 -0.0060 7 6 3.5902 -1.1991 -0.0002 8 6 2.2017 -1.2018 0.0057 9 7 1.5028 -2.4156 0.0120 10 6 2.0290 -3.4994 -0.5922 11 8 3.1460 -3.4468 -1.0696 12 7 1.3172 -4.6414 -0.6669 13 6 1.8870 -5.8176 -1.3288 14 6 0.9285 -7.0008 -1.1801 15 6 -0.4687 -6.7744 -1.6975 16 1 -1.2381 -6.4099 -1.0331 17 6 -0.7647 -7.0328 -3.0191 18 7 0.1569 -7.5310 -3.8142 19 14 -2.4748 -6.6751 -3.6805 20 1 -2.5239 -5.2846 -4.1994 21 1 -2.7897 -7.6245 -4.7780 22 1 -3.4701 -6.8318 -2.5896 23 6 1.0890 -7.8892 0.0551 24 6 1.5148 -8.4070 -1.3210 25 1 -0.3633 0.0049 1.0276 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6581 2.1314 0.0004 29 1 5.3574 0.0013 -0.0105 30 1 4.1324 -2.1331 -0.0004 31 1 0.6400 -2.4763 0.4511 32 1 0.4261 -4.6833 -0.2862 33 1 2.0369 -5.6021 -2.3868 34 1 2.8439 -6.0652 -0.8694 35 1 -0.0281 -7.6448 -4.7596 36 1 1.8774 -7.6304 0.7621 37 1 0.1841 -8.3101 0.4934 38 1 0.8897 -9.1685 -1.7875 39 1 2.5833 -8.4891 -1.5201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431202726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:54:06 Heat of formation + Delta-G solvation = -28.132706 kcal Electronic energy + Delta-G solvation = -22702.935039 eV Core-core repulsion = 19139.672937 eV Total energy + Delta-G solvation = -3563.262102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.84189 -40.52530 -38.59869 -36.80254 -34.48418 -33.48961 -32.69190 -32.02273 -29.36151 -27.19908 -26.15201 -25.19010 -22.99614 -21.60097 -21.18533 -20.45191 -19.50524 -18.18773 -17.51747 -17.11093 -16.20694 -16.05959 -15.58602 -15.12174 -14.78994 -14.58912 -14.24204 -13.94243 -13.80678 -13.64711 -13.31079 -13.26242 -12.79189 -12.71441 -12.16936 -12.02871 -11.81491 -11.65608 -11.20300 -11.07742 -10.98635 -10.58828 -10.27809 -10.19498 -9.75351 -9.53086 -9.12970 -8.92008 -8.57759 -8.43194 -8.18507 -7.81664 -6.14901 -4.25145 1.11377 1.22401 2.89587 3.20570 3.29201 3.29247 3.33960 3.74926 4.25448 4.28814 4.55372 4.68998 4.73044 5.05944 5.13485 5.19339 5.29867 5.43115 5.44864 5.48136 5.81274 5.94472 5.98415 6.08538 6.24983 6.27670 6.33572 6.41574 6.47832 6.52375 6.65792 6.75075 7.01994 7.07241 7.13456 7.24343 7.33962 7.52226 7.72878 8.26026 8.38825 8.76571 8.90925 9.42940 10.92746 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.003657 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.225806 B = 7654.227756 C = 8394.913478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.136 4.136 4 C 0.071 3.929 5 F -0.146 7.146 6 C -0.139 4.139 7 C -0.096 4.096 8 C 0.170 3.830 9 N -0.688 5.688 10 C 0.696 3.304 11 O -0.586 6.586 12 N -0.709 5.709 13 C 0.180 3.820 14 C 0.022 3.978 15 C -0.502 4.502 16 H 0.059 0.941 17 C 0.075 3.925 18 N -0.873 5.873 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.212 4.212 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.406 0.594 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 13.013 8.871 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.155 4.155 4 C 0.051 3.949 5 F -0.125 7.125 6 C -0.158 4.158 7 C -0.116 4.116 8 C 0.073 3.927 9 N -0.335 5.335 10 C 0.396 3.604 11 O -0.464 6.464 12 N -0.361 5.361 13 C 0.057 3.943 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.077 0.923 17 C -0.129 4.129 18 N -0.508 5.508 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.249 4.249 24 C -0.177 4.177 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.176 0.824 31 H 0.242 0.758 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.499 12.810 8.200 15.413 hybrid contribution -1.606 0.343 -0.233 1.658 sum 0.893 13.152 7.967 15.403 Atomic orbital electron populations 1.20752 0.90313 1.03599 1.02548 1.19453 0.96371 0.90882 1.03155 1.20704 0.92091 0.98420 1.04300 1.17627 0.90111 0.81204 1.05970 1.91465 1.80459 1.46237 1.94314 1.21057 1.00800 0.90738 1.03203 1.21414 0.92709 0.99206 0.98286 1.17418 0.91196 0.84203 0.99869 1.42718 1.23936 1.08279 1.58598 1.16049 0.84808 0.80315 0.79214 1.90846 1.18905 1.83275 1.53404 1.45190 1.19716 1.10620 1.60593 1.20905 0.94037 0.83080 0.96306 1.19036 0.95381 0.87664 0.95838 1.20318 0.92804 1.45788 0.95014 0.92255 1.24981 0.96883 0.93843 0.97230 1.69993 1.33839 1.42302 1.04691 0.86651 0.84694 0.78191 0.78838 1.20629 1.21174 1.19826 1.23067 1.01343 1.09031 0.91457 1.22452 0.98315 0.99780 0.97147 0.90836 0.90938 0.91051 0.84763 0.84720 0.82392 0.75775 0.76481 0.91617 0.94046 0.92810 0.91713 0.90409 0.89364 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.46 36.01 0.34 -0.67 16 2 C -0.10 -1.10 5.90 -104.44 -0.62 -1.72 16 3 C -0.14 -1.53 9.68 -39.54 -0.38 -1.91 16 4 C 0.07 0.89 7.30 -39.41 -0.29 0.60 16 5 F -0.15 -1.85 17.27 2.25 0.04 -1.81 16 6 C -0.14 -1.77 10.02 -39.54 -0.40 -2.17 16 7 C -0.10 -1.38 8.73 -39.41 -0.34 -1.73 16 8 C 0.17 2.34 6.35 -83.65 -0.53 1.81 16 9 N -0.69 -9.45 4.84 -14.21 -0.07 -9.52 16 10 C 0.70 12.38 8.43 -86.92 -0.73 11.64 16 11 O -0.59 -12.27 13.54 5.29 0.07 -12.20 16 12 N -0.71 -12.92 5.43 -65.22 -0.35 -13.27 16 13 C 0.18 3.86 5.55 -4.04 -0.02 3.84 16 14 C 0.02 0.48 1.63 -155.66 -0.25 0.23 16 15 C -0.50 -12.29 8.19 -34.44 -0.28 -12.57 16 16 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 17 C 0.08 1.92 5.42 -17.82 -0.10 1.82 16 18 N -0.87 -23.48 12.50 55.43 0.69 -22.79 16 19 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C -0.21 -4.25 9.93 -26.69 -0.27 -4.52 16 24 C -0.14 -3.08 9.06 -26.69 -0.24 -3.32 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.07 0.66 7.11 -51.93 -0.37 0.29 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.16 2.55 5.92 -52.49 -0.31 2.24 16 31 H 0.41 4.32 7.71 -40.82 -0.31 4.01 16 32 H 0.40 6.62 8.04 -40.82 -0.33 6.29 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.09 2.12 8.08 -51.93 -0.42 1.70 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -28.59 336.07 -8.78 -37.37 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.09 Total: 11.02 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -4.11 Total: -8.67 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.27 Total: -45.59 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.59 -8.78 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431202726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.235 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds