Wall clock time and date at job start Fri Apr 10 2020 19:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48502 * 109.47092 * 239.99685 * 3 2 1 5 5 H 1.48499 * 109.47119 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47282 * 119.99521 * 3 2 1 7 7 C 1.37875 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00399 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46997 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47151 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00194 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99835 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99952 * 180.02562 * 12 11 10 15 15 C 1.40067 * 120.00098 * 185.32248 * 14 12 11 16 16 C 1.38865 * 120.04282 * 33.25804 * 15 14 12 17 17 C 1.38096 * 119.95392 * 180.02562 * 16 15 14 18 18 C 1.38494 * 120.04333 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.95536 * 179.97438 * 18 17 16 20 20 C 1.38446 * 120.09247 * 359.97398 * 18 17 16 21 21 C 1.50694 * 119.98125 * 179.97438 * 20 18 17 22 22 C 1.53001 * 117.50428 * 240.00549 * 21 20 18 23 23 C 1.53005 * 60.03069 * 252.52257 * 22 21 20 24 24 C 1.38140 * 120.04154 * 0.28238 * 20 18 17 25 25 H 0.97005 * 119.99738 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47019 * 59.99537 * 9 7 2 27 27 H 1.08998 * 109.46850 * 299.99648 * 9 7 2 28 28 H 1.09001 * 109.47375 * 60.00339 * 10 9 7 29 29 H 1.09004 * 109.47509 * 299.99985 * 10 9 7 30 30 H 0.97004 * 119.99539 * 0.02562 * 11 10 9 31 31 H 0.96996 * 120.00041 * 5.31961 * 14 12 11 32 32 H 1.07999 * 120.02230 * 0.02562 * 16 15 14 33 33 H 1.08001 * 119.98208 * 180.02562 * 17 16 15 34 34 H 1.09010 * 115.55971 * 25.69574 * 21 20 18 35 35 H 1.09003 * 117.50120 * 145.02229 * 22 21 20 36 36 H 1.08999 * 117.49635 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.49848 * 107.47558 * 23 22 21 38 38 H 1.09001 * 117.49723 * 252.47588 * 23 22 21 39 39 H 1.07999 * 120.02328 * 179.72198 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1865 -6.0980 0.0007 13 8 3.4024 -6.0980 0.0003 14 7 1.5126 -7.2652 0.0008 15 6 2.2084 -8.4756 0.1129 16 6 3.3697 -8.5423 0.8713 17 6 4.0545 -9.7366 0.9802 18 6 3.5841 -10.8671 0.3331 19 9 4.2558 -12.0344 0.4403 20 6 2.4265 -10.8027 -0.4236 21 6 1.9172 -12.0342 -1.1271 22 6 1.7913 -11.9763 -2.6508 23 6 0.5343 -11.9548 -1.7787 24 6 1.7414 -9.6087 -0.5393 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.5427 -4.9308 0.0011 31 1 0.5458 -7.2670 -0.0768 32 1 3.7370 -7.6609 1.3757 33 1 4.9575 -9.7891 1.5703 34 1 2.2104 -12.9852 -0.6821 35 1 2.0016 -12.8891 -3.2083 36 1 2.0773 -11.0475 -3.1445 37 1 -0.0064 -11.0119 -1.6983 38 1 -0.0825 -12.8534 -1.7626 39 1 0.8409 -9.5577 -1.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439779386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:54:22 Heat of formation + Delta-G solvation = -50.559387 kcal Electronic energy + Delta-G solvation = -21924.408209 eV Core-core repulsion = 18360.173613 eV Total energy + Delta-G solvation = -3564.234596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85401 -41.75886 -40.13319 -37.90967 -36.61578 -35.62625 -34.80443 -31.78870 -31.71627 -29.87367 -26.71846 -25.36641 -23.96026 -23.21980 -22.80917 -22.42816 -21.11425 -19.74065 -18.76053 -18.45577 -18.26894 -17.46340 -16.80890 -16.54441 -16.50887 -16.19494 -15.89072 -15.26623 -15.19902 -15.18041 -15.01287 -14.34798 -14.26859 -13.98240 -13.58947 -13.22345 -12.93182 -12.90418 -12.53778 -12.37936 -12.30795 -12.21903 -11.84957 -11.68491 -11.52776 -11.31407 -11.28968 -11.02121 -10.59432 -10.09650 -9.79717 -8.98938 -8.23661 -6.33609 0.04436 0.15412 1.42420 1.44793 1.50684 1.55631 1.94679 2.41410 2.52644 3.03819 3.11613 3.18678 3.28215 3.48692 3.70075 3.93715 4.08531 4.15230 4.24310 4.28796 4.40287 4.51036 4.52133 4.77014 4.85630 4.86986 4.99643 5.02852 5.16238 5.18550 5.26388 5.27503 5.28959 5.41169 5.49088 5.60128 5.78409 5.90307 5.93969 6.17073 6.79528 6.96166 7.35665 7.42929 8.87957 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.002497 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.869210 B =11208.780847 C =11780.278287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.159 3.841 11 N -0.724 5.724 12 C 0.699 3.301 13 O -0.616 6.616 14 N -0.671 5.671 15 C 0.160 3.840 16 C -0.117 4.117 17 C -0.129 4.129 18 C 0.066 3.934 19 F -0.144 7.144 20 C -0.062 4.062 21 C -0.137 4.137 22 C -0.167 4.167 23 C -0.159 4.159 24 C -0.118 4.118 25 H 0.266 0.734 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.410 0.590 31 H 0.426 0.574 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -25.079 -1.814 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.035 3.965 11 N -0.378 5.378 12 C 0.399 3.601 13 O -0.496 6.496 14 N -0.321 5.321 15 C 0.065 3.935 16 C -0.138 4.138 17 C -0.148 4.148 18 C 0.046 3.954 19 F -0.123 7.123 20 C -0.064 4.064 21 C -0.155 4.155 22 C -0.203 4.203 23 C -0.195 4.195 24 C -0.138 4.138 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.246 0.754 31 H 0.265 0.735 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.074 -24.887 -1.801 24.953 hybrid contribution -0.218 0.989 0.177 1.028 sum -0.144 -23.898 -1.624 23.954 Atomic orbital electron populations 1.70046 1.07487 1.28046 1.51003 1.25840 0.95774 1.03002 0.94457 0.85531 0.78330 0.78279 0.79120 1.19383 1.20674 1.19371 1.21443 0.93643 0.91916 1.51547 0.92243 1.19128 0.94241 0.91512 0.96516 1.21145 0.94662 0.80673 0.99988 1.45222 1.10680 1.04161 1.77740 1.16087 0.85251 0.80990 0.77767 1.90904 1.13249 1.86797 1.58644 1.42425 1.10979 1.02210 1.76452 1.17623 0.94228 0.85212 0.96470 1.21031 0.95921 0.97829 0.98998 1.21108 1.01676 0.90926 1.01138 1.17531 0.93408 0.81925 1.02528 1.91447 1.79581 1.46241 1.94984 1.19081 0.93753 0.95393 0.98134 1.20939 1.02960 0.95840 0.95778 1.23130 1.02066 1.04210 0.90930 1.23218 0.89644 1.04922 1.01734 1.20753 1.02665 0.90027 1.00393 0.92548 0.97144 0.97147 0.93405 0.93499 0.75365 0.73536 0.85550 0.83268 0.86479 0.87049 0.88936 0.87444 0.86631 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.29 21.45 0.28 -53.12 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.16 6.57 5.61 86.38 0.48 7.06 16 11 N -0.72 -23.46 5.56 -478.54 -2.66 -26.12 16 12 C 0.70 22.54 8.30 179.06 1.49 24.03 16 13 O -0.62 -24.88 14.03 -4.00 -0.06 -24.94 16 14 N -0.67 -15.47 5.35 -317.12 -1.70 -17.17 16 15 C 0.16 3.81 6.28 38.11 0.24 4.05 16 16 C -0.12 -3.14 8.65 22.39 0.19 -2.95 16 17 C -0.13 -3.04 10.02 22.30 0.22 -2.82 16 18 C 0.07 1.50 7.24 22.38 0.16 1.66 16 19 F -0.14 -3.31 16.60 44.97 0.75 -2.56 16 20 C -0.06 -1.22 5.62 -19.84 -0.11 -1.33 16 21 C -0.14 -2.08 5.80 -11.52 -0.07 -2.14 16 22 C -0.17 -2.08 10.16 30.60 0.31 -1.77 16 23 C -0.16 -1.65 9.86 30.62 0.30 -1.35 16 24 C -0.12 -2.20 9.21 22.39 0.21 -1.99 16 25 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.41 10.89 8.49 -92.71 -0.79 10.10 16 31 H 0.43 6.45 8.84 -92.71 -0.82 5.63 16 32 H 0.13 3.94 6.41 -2.91 -0.02 3.92 16 33 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.12 1.75 7.86 -2.38 -0.02 1.73 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 0.95 6.18 -2.39 -0.01 0.94 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.16 2.06 6.03 -2.91 -0.02 2.05 16 Total: -1.00 -67.30 337.00 2.41 -64.89 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.51 Total: 19.02 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 4.28 Total: -5.01 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -4.07 Total: -96.41 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.06 Total: -24.94 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.75 Total: -2.56 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -67.30 2.41 -64.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439779386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.329 kcal (2) G-P(sol) polarization free energy of solvation -67.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds