Wall clock time and date at job start Fri Apr 10 2020 20:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30011 * 127.34114 * 2 1 4 4 O 1.20661 * 112.30433 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.15542 * 359.75424 * 4 3 2 6 6 C 1.50696 * 126.82916 * 180.29740 * 5 4 3 7 7 C 1.37358 * 106.34183 * 0.39016 * 5 4 3 8 8 C 1.47400 * 128.56833 * 179.91221 * 7 5 4 9 9 O 1.21611 * 120.00039 * 269.67499 * 8 7 5 10 10 N 1.34774 * 119.99933 * 89.66990 * 8 7 5 11 11 C 1.46497 * 119.99821 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.50192 * 35.00364 * 11 10 8 13 13 C 1.53038 * 109.52381 * 155.08372 * 11 10 8 14 14 C 1.53044 * 109.54000 * 181.33107 * 13 11 10 15 15 C 1.53197 * 109.30911 * 298.63474 * 14 13 11 16 16 N 1.46922 * 108.77520 * 54.63476 * 15 14 13 17 17 C 1.36940 * 120.63063 * 126.41380 * 16 15 14 18 18 H 1.08000 * 120.00137 * 207.66155 * 17 16 15 19 19 C 1.38812 * 119.99979 * 27.65536 * 17 16 15 20 20 N 1.31621 * 119.99877 * 17.37697 * 19 17 16 21 21 Si 1.86800 * 119.99995 * 197.36845 * 19 17 16 22 22 H 1.48497 * 109.47280 * 60.00370 * 21 19 17 23 23 H 1.48508 * 109.47136 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47122 * 300.00385 * 21 19 17 25 25 C 1.46922 * 118.74031 * 306.38959 * 16 15 14 26 26 H 1.08997 * 109.46833 * 270.00771 * 1 2 3 27 27 H 1.09003 * 109.46775 * 29.99578 * 1 2 3 28 28 H 1.08992 * 109.47526 * 149.99969 * 1 2 3 29 29 H 1.09001 * 109.47736 * 270.10362 * 6 5 4 30 30 H 1.09004 * 109.47244 * 30.10683 * 6 5 4 31 31 H 1.09007 * 109.46739 * 150.10746 * 6 5 4 32 32 H 0.96998 * 119.99713 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.45991 * 301.35163 * 13 11 10 34 34 H 1.09003 * 109.46223 * 61.31469 * 13 11 10 35 35 H 1.08995 * 109.49460 * 178.68472 * 14 13 11 36 36 H 1.09003 * 109.52126 * 58.60038 * 14 13 11 37 37 H 1.08993 * 109.58853 * 294.84486 * 15 14 13 38 38 H 1.09002 * 109.58434 * 174.41799 * 15 14 13 39 39 H 0.97001 * 119.99724 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.58332 * 293.82306 * 25 16 15 41 41 H 1.09002 * 109.70641 * 173.46859 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7206 0.0005 5 6 3.6494 -0.6010 0.0062 6 6 4.9711 -1.3249 0.0146 7 6 2.3991 -1.1698 0.0007 8 6 2.0398 -2.5993 0.0017 9 8 1.8915 -3.1897 -1.0511 10 7 1.8759 -3.2521 1.1693 11 6 1.5194 -4.6730 1.1703 12 1 2.0025 -5.1700 0.3291 13 6 1.9843 -5.3161 2.4789 14 6 1.6417 -6.8076 2.4663 15 6 0.1231 -6.9776 2.3569 16 7 -0.3517 -6.2394 1.1786 17 6 -1.1075 -6.8633 0.2223 18 1 -1.0845 -6.5117 -0.7986 19 6 -1.9032 -7.9479 0.5649 20 7 -2.2059 -8.1695 1.8266 21 14 -2.5447 -9.0927 -0.7645 22 1 -1.3999 -9.7021 -1.4877 23 1 -3.3644 -10.1635 -0.1424 24 1 -3.3804 -8.3223 -1.7202 25 6 -0.0005 -4.8189 1.0462 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 5.2952 -1.5016 -1.0109 30 1 5.7146 -0.7178 0.5312 31 1 4.8594 -2.2790 0.5299 32 1 1.9939 -2.7810 2.0090 33 1 3.0623 -5.1920 2.5815 34 1 1.4821 -4.8352 3.3184 35 1 1.9939 -7.2695 3.3886 36 1 2.1236 -7.2849 1.6131 37 1 -0.3545 -6.5816 3.2530 38 1 -0.1193 -8.0347 2.2478 39 1 -2.7616 -8.9276 2.0660 40 1 -0.4882 -4.2469 1.8356 41 1 -0.3249 -4.4493 0.0734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006701171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:07 Heat of formation + Delta-G solvation = 15.055008 kcal Electronic energy + Delta-G solvation = -23905.070797 eV Core-core repulsion = 20401.715848 eV Total energy + Delta-G solvation = -3503.354948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.94858 -40.97362 -38.97077 -35.97167 -35.63761 -34.64243 -34.04406 -32.33856 -30.57216 -29.76291 -28.81073 -27.25721 -25.72880 -23.88706 -23.46386 -21.80662 -21.27426 -20.78108 -19.00506 -18.83481 -18.70663 -17.42379 -17.21146 -16.70850 -16.16214 -15.77407 -15.39860 -15.28730 -14.87775 -14.69204 -14.41537 -14.20105 -14.19622 -14.04057 -13.98246 -13.56976 -13.44184 -13.40737 -13.03148 -12.73525 -12.59586 -12.18929 -12.10835 -11.97361 -11.80544 -11.62830 -11.32149 -11.21198 -10.96586 -10.61830 -10.43808 -10.21101 -8.69936 -7.90568 -5.35766 0.26435 0.80434 1.27291 1.45404 1.47070 1.54579 1.76142 2.21669 2.51033 3.05895 3.22731 3.23981 3.64898 3.78217 3.88673 3.92733 4.11382 4.22763 4.25414 4.46471 4.48914 4.53382 4.56660 4.59308 4.62476 4.76523 4.81440 4.91702 5.01572 5.04781 5.08414 5.12212 5.14632 5.27538 5.41936 5.54723 5.63690 5.77488 6.36454 6.44162 7.09337 7.13830 7.15829 7.82687 8.32053 9.14908 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.003832 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.019385 B = 7304.962053 C = 7803.572448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.051 3.949 3 N -0.374 5.374 4 O 0.095 5.905 5 C 0.039 3.961 6 C -0.080 4.080 7 C -0.277 4.277 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.691 5.691 11 C 0.141 3.859 12 H 0.064 0.936 13 C -0.104 4.104 14 C -0.129 4.129 15 C 0.170 3.830 16 N -0.606 5.606 17 C -0.269 4.269 18 H 0.054 0.946 19 C -0.041 4.041 20 N -0.928 5.928 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.279 1.279 25 C 0.144 3.856 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.416 0.584 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.005 0.995 38 H 0.055 0.945 39 H 0.252 0.748 40 H 0.021 0.979 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.970 14.408 2.825 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 N -0.083 5.083 4 O 0.035 5.965 5 C -0.025 4.025 6 C -0.137 4.137 7 C -0.285 4.285 8 C 0.389 3.611 9 O -0.448 6.448 10 N -0.342 5.342 11 C 0.035 3.965 12 H 0.082 0.918 13 C -0.142 4.142 14 C -0.169 4.169 15 C 0.045 3.955 16 N -0.330 5.330 17 C -0.400 4.400 18 H 0.071 0.929 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.205 1.205 25 C 0.017 3.983 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.253 0.747 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 14.573 15.169 2.157 21.145 hybrid contribution -1.094 -1.302 -0.474 1.766 sum 13.478 13.867 1.683 19.411 Atomic orbital electron populations 1.20323 0.84151 1.04372 1.04965 1.25076 0.99454 0.86378 1.00218 1.73596 0.89569 1.23624 1.21483 1.84504 1.21057 1.23014 1.67885 1.25227 0.98071 0.83181 0.96000 1.20730 0.87567 0.99462 1.05944 1.21838 0.94122 0.94309 1.18203 1.17060 0.75982 0.84299 0.83789 1.90847 1.52028 1.68856 1.33049 1.45861 1.69023 1.11032 1.08312 1.21368 0.95662 0.79708 0.99730 0.91758 1.21619 1.01988 0.95435 0.95142 1.22016 0.97097 0.96050 1.01730 1.20741 0.90823 0.96879 0.87063 1.44210 1.59486 1.05290 1.24033 1.19364 1.19099 1.12250 0.89256 0.92868 1.25683 0.97753 1.02254 0.98036 1.70160 1.39675 1.30325 1.17219 0.85413 0.77924 0.78676 0.78874 1.20487 1.21292 1.20533 1.21212 0.93508 0.85706 0.97894 0.87923 0.88750 0.90834 0.87715 0.86068 0.88266 0.74735 0.88977 0.90662 0.89639 0.93202 0.97734 0.92706 0.93860 0.96065 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.49 71.23 0.75 -0.96 16 2 C 0.05 1.26 7.59 45.16 0.34 1.61 16 3 N -0.37 -9.34 12.01 -44.77 -0.54 -9.88 16 4 O 0.10 2.06 11.06 76.96 0.85 2.91 16 5 C 0.04 0.75 7.55 25.48 0.19 0.95 16 6 C -0.08 -0.85 10.33 71.23 0.74 -0.12 16 7 C -0.28 -6.95 6.24 -18.74 -0.12 -7.07 16 8 C 0.60 18.21 7.57 86.66 0.66 18.86 16 9 O -0.57 -22.93 16.77 -4.07 -0.07 -23.00 16 10 N -0.69 -18.07 5.08 -445.47 -2.26 -20.33 16 11 C 0.14 4.70 2.60 45.07 0.12 4.82 16 12 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 13 C -0.10 -2.84 5.36 30.62 0.16 -2.67 16 14 C -0.13 -4.40 6.08 30.67 0.19 -4.21 16 15 C 0.17 7.93 5.31 86.36 0.46 8.38 16 16 N -0.61 -31.00 2.99 -699.10 -2.09 -33.09 16 17 C -0.27 -15.46 9.59 84.03 0.81 -14.66 16 18 H 0.05 3.11 7.89 -2.91 -0.02 3.09 16 19 C -0.04 -2.34 4.91 84.86 0.42 -1.92 16 20 N -0.93 -54.61 11.19 21.65 0.24 -54.37 16 21 Si 0.96 45.79 29.59 68.60 2.03 47.82 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 C 0.14 6.20 6.09 86.36 0.53 6.72 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.10 1.02 8.11 -2.38 -0.02 1.00 16 32 H 0.42 7.95 8.59 -92.71 -0.80 7.15 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.05 2.92 6.04 -2.39 -0.01 2.91 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.03 1.46 7.94 -2.39 -0.02 1.44 16 Total: -1.00 -73.73 343.72 3.64 -70.09 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.25 Total: 10.12 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.23 Total: 9.73 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -4.65 Total: -117.67 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.78 Total: -20.09 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.73 3.64 -70.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006701171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.142 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds