Wall clock time and date at job start Fri Apr 10 2020 20:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46667 * 2 1 4 4 O 1.34257 * 126.52687 * 270.01987 * 3 2 1 5 5 C 1.34049 * 108.22499 * 179.97438 * 4 3 2 6 6 N 1.29932 * 109.24839 * 359.73338 * 5 4 3 7 7 C 1.36069 * 108.47487 * 0.43408 * 6 5 4 8 8 C 1.47421 * 126.45396 * 179.82675 * 7 6 5 9 9 O 1.21602 * 120.00586 * 179.69124 * 8 7 6 10 10 N 1.34780 * 119.99461 * 359.69109 * 8 7 6 11 11 C 1.46495 * 120.00012 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.52535 * 324.92214 * 11 10 8 13 13 C 1.53039 * 109.50101 * 204.84055 * 11 10 8 14 14 C 1.53035 * 109.54117 * 178.68075 * 13 11 10 15 15 C 1.52764 * 109.38272 * 61.23839 * 14 13 11 16 16 N 1.46930 * 109.00948 * 305.58760 * 15 14 13 17 17 C 1.36933 * 120.63231 * 233.58307 * 16 15 14 18 18 H 1.08003 * 119.99756 * 151.85532 * 17 16 15 19 19 C 1.38810 * 119.99898 * 331.85966 * 17 16 15 20 20 N 1.31610 * 120.00090 * 342.99442 * 19 17 16 21 21 Si 1.86805 * 119.99845 * 162.99929 * 19 17 16 22 22 H 1.48502 * 109.46992 * 266.23159 * 21 19 17 23 23 H 1.48503 * 109.46878 * 146.23043 * 21 19 17 24 24 H 1.48501 * 109.47000 * 26.23150 * 21 19 17 25 25 C 1.46931 * 118.73686 * 53.30825 * 16 15 14 26 26 H 1.09005 * 109.47413 * 60.00056 * 1 2 3 27 27 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47033 * 299.99564 * 1 2 3 29 29 H 1.09001 * 109.47530 * 240.00573 * 2 1 3 30 30 H 1.08997 * 109.47684 * 120.00071 * 2 1 3 31 31 H 1.08002 * 125.37453 * 179.97438 * 5 4 3 32 32 H 0.96999 * 119.99999 * 0.02562 * 10 8 7 33 33 H 1.08999 * 109.45440 * 298.70465 * 13 11 10 34 34 H 1.08997 * 109.46039 * 58.67131 * 13 11 10 35 35 H 1.09002 * 109.50084 * 181.31186 * 14 13 11 36 36 H 1.08999 * 109.49745 * 301.41561 * 14 13 11 37 37 H 1.09005 * 109.51353 * 185.70891 * 15 14 13 38 38 H 1.08997 * 109.43146 * 65.42331 * 15 14 13 39 39 H 0.97003 * 120.00299 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58453 * 66.43002 * 25 16 15 41 41 H 1.08997 * 109.58681 * 186.71537 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2982 2.1744 -1.0789 5 6 2.7219 3.3745 -0.6579 6 7 2.7238 3.3966 0.6412 7 6 2.3022 2.1846 1.0937 8 6 2.1587 1.7774 2.5033 9 8 1.7642 0.6600 2.7763 10 7 2.4648 2.6436 3.4894 11 6 2.3228 2.2389 4.8901 12 1 1.4631 1.5765 4.9926 13 6 2.1184 3.4797 5.7623 14 6 1.9371 3.0556 7.2214 15 6 3.1942 2.3306 7.6986 16 7 3.4853 1.2220 6.7793 17 6 3.6505 -0.0522 7.2530 18 1 3.4143 -0.8972 6.6233 19 6 4.1214 -0.2576 8.5425 20 7 4.7193 0.7209 9.1884 21 14 3.9066 -1.9230 9.3611 22 1 2.6604 -1.9205 10.1687 23 1 5.0688 -2.1937 10.2449 24 1 3.8198 -2.9786 8.3202 25 6 3.5898 1.5055 5.3414 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.0119 4.1949 -1.2977 32 1 2.7791 3.5351 3.2716 33 1 2.9892 4.1298 5.6785 34 1 1.2309 4.0167 5.4274 35 1 1.7683 3.9381 7.8386 36 1 1.0811 2.3856 7.3019 37 1 3.0298 1.9391 8.7026 38 1 4.0327 3.0269 7.7084 39 1 5.0487 0.5772 10.0894 40 1 4.4612 2.1332 5.1552 41 1 3.6888 0.5700 4.7908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006964430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:12 Heat of formation + Delta-G solvation = -26.514812 kcal Electronic energy + Delta-G solvation = -23819.851666 eV Core-core repulsion = 20314.694115 eV Total energy + Delta-G solvation = -3505.157551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.45484 -40.88519 -38.99076 -36.12444 -35.80358 -35.06028 -34.09878 -32.36941 -30.86882 -29.82982 -27.27744 -25.85216 -24.59938 -23.91378 -23.58992 -22.29439 -21.50670 -20.96454 -19.14259 -18.72448 -17.85679 -17.28571 -17.14341 -16.69864 -16.12089 -15.96279 -15.72633 -15.55448 -15.21280 -14.93123 -14.77050 -14.45000 -14.20995 -14.05004 -13.57690 -13.44044 -13.04260 -12.76854 -12.69284 -12.61103 -12.41270 -12.22180 -12.13154 -11.97803 -11.82878 -11.72298 -11.60609 -11.34372 -11.07901 -10.62839 -10.23920 -9.92277 -8.71203 -7.91051 -5.37391 0.03914 1.07021 1.44937 1.46052 1.54377 1.56279 2.07558 2.23602 2.50341 3.10343 3.23301 3.55424 3.66064 3.77824 3.89106 4.07697 4.08220 4.22608 4.23441 4.29312 4.44943 4.52916 4.56713 4.76267 4.77155 4.89538 4.93357 4.99110 5.07602 5.10536 5.12520 5.22337 5.23788 5.25070 5.43729 5.53182 5.61964 5.74366 6.30772 6.36155 6.61972 7.10573 7.14163 7.80398 8.31479 9.15071 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.003845 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.006806 B = 7281.289496 C = 8029.492979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.047 3.953 4 O -0.196 6.196 5 C 0.197 3.803 6 N -0.494 5.494 7 C -0.100 4.100 8 C 0.592 3.408 9 O -0.562 6.562 10 N -0.696 5.696 11 C 0.143 3.857 12 H 0.065 0.935 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.171 3.829 16 N -0.606 5.606 17 C -0.269 4.269 18 H 0.055 0.945 19 C -0.043 4.043 20 N -0.930 5.930 21 Si 0.967 3.033 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.147 3.853 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.308 0.692 32 H 0.414 0.586 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.003 0.997 39 H 0.253 0.747 40 H 0.016 0.984 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 7.485 -21.340 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.010 4.010 4 O -0.082 6.082 5 C -0.031 4.031 6 N -0.222 5.222 7 C -0.218 4.218 8 C 0.379 3.621 9 O -0.442 6.442 10 N -0.346 5.346 11 C 0.037 3.963 12 H 0.083 0.917 13 C -0.143 4.143 14 C -0.168 4.168 15 C 0.046 3.954 16 N -0.330 5.330 17 C -0.399 4.399 18 H 0.073 0.927 19 C -0.239 4.239 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.198 1.198 25 C 0.019 3.981 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.322 0.678 32 H 0.251 0.749 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.021 0.979 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.395 7.207 -20.597 23.040 hybrid contribution 0.385 -0.868 0.338 1.008 sum -7.010 6.338 -20.258 22.354 Atomic orbital electron populations 1.21663 0.92296 1.03759 1.01800 1.20438 0.97709 0.84776 1.05662 1.24008 0.97708 0.96014 0.83288 1.84408 1.63744 1.24651 1.35445 1.29226 0.96007 0.87079 0.90786 1.70699 1.18793 1.20737 1.11995 1.21315 1.12796 0.92910 0.94770 1.17116 0.77025 0.84289 0.83671 1.90787 1.48446 1.21098 1.83824 1.45755 1.66361 1.17213 1.05269 1.21342 0.98473 0.97356 0.79172 0.91656 1.21611 1.02824 0.95436 0.94434 1.21943 0.98719 1.00247 0.95847 1.20635 0.92839 0.87768 0.94122 1.44218 1.82292 1.05323 1.01163 1.19434 1.37330 0.84563 0.98603 0.92692 1.25745 0.97729 1.00917 0.99493 1.70174 1.40714 1.33743 1.12914 0.85262 0.77148 0.79853 0.78236 1.20787 1.21559 1.19839 1.21184 0.94673 0.96909 0.85289 0.91170 0.89612 0.94207 0.87079 0.88711 0.67758 0.74905 0.90946 0.89649 0.89564 0.93089 0.92509 0.97886 0.93838 0.96649 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.82 16 2 C -0.05 -1.00 5.93 29.85 0.18 -0.82 16 3 C 0.05 1.10 6.69 25.19 0.17 1.26 16 4 O -0.20 -3.46 10.73 0.39 0.00 -3.46 16 5 C 0.20 2.78 13.19 130.52 1.72 4.50 16 6 N -0.49 -11.28 11.06 -305.14 -3.37 -14.66 16 7 C -0.10 -2.77 6.99 40.41 0.28 -2.49 16 8 C 0.59 20.26 7.78 86.66 0.67 20.93 16 9 O -0.56 -22.53 14.47 -4.04 -0.06 -22.59 16 10 N -0.70 -22.47 5.08 -445.44 -2.26 -24.73 16 11 C 0.14 5.37 2.60 45.07 0.12 5.49 16 12 H 0.07 2.79 7.58 -2.38 -0.02 2.77 16 13 C -0.11 -3.36 5.35 30.62 0.16 -3.20 16 14 C -0.13 -4.75 6.06 30.53 0.19 -4.56 16 15 C 0.17 8.41 5.28 86.22 0.45 8.86 16 16 N -0.61 -32.42 3.00 -699.90 -2.10 -34.52 16 17 C -0.27 -15.84 9.58 84.03 0.81 -15.04 16 18 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 19 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 20 N -0.93 -55.95 11.20 21.65 0.24 -55.71 16 21 Si 0.97 46.53 29.59 68.60 2.03 48.56 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 25 C 0.15 6.81 6.09 86.36 0.53 7.34 16 26 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.47 6.48 -2.39 -0.02 2.45 16 31 H 0.31 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.41 11.46 8.33 -92.71 -0.77 10.69 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 3.13 6.06 -2.38 -0.01 3.12 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.03 1.66 7.93 -2.39 -0.02 1.64 16 Total: -1.00 -74.88 338.87 1.16 -73.72 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.27 Total: 15.00 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.41 Total: 18.39 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -7.49 Total: -129.61 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.88 1.16 -73.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006964430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.201 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds