Wall clock time and date at job start Fri Apr 10 2020 20:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30129 * 126.70702 * 2 1 4 4 O 1.20889 * 111.98518 * 180.02562 * 3 2 1 5 5 C 1.34641 * 111.46424 * 359.72110 * 4 3 2 6 6 C 1.47512 * 126.94263 * 180.29776 * 5 4 3 7 7 O 1.21581 * 120.00378 * 180.16800 * 6 5 4 8 8 N 1.34779 * 120.00000 * 0.17009 * 6 5 4 9 9 C 1.46501 * 120.00344 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.49350 * 324.99889 * 9 8 6 11 11 C 1.53035 * 109.49982 * 204.93418 * 9 8 6 12 12 C 1.53035 * 109.53965 * 178.67983 * 11 9 8 13 13 C 1.53195 * 109.31402 * 61.36392 * 12 11 9 14 14 N 1.46924 * 108.77527 * 305.37093 * 13 12 11 15 15 C 1.36941 * 120.62691 * 233.60748 * 14 13 12 16 16 H 1.07995 * 120.00527 * 27.68231 * 15 14 13 17 17 C 1.38809 * 119.99638 * 207.68298 * 15 14 13 18 18 N 1.31618 * 120.00317 * 17.34980 * 17 15 14 19 19 Si 1.86805 * 120.00005 * 197.35268 * 17 15 14 20 20 H 1.48499 * 109.47113 * 59.99525 * 19 17 15 21 21 H 1.48498 * 109.47473 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47097 * 299.99946 * 19 17 15 23 23 C 1.46934 * 118.76746 * 53.58095 * 14 13 12 24 24 C 1.36820 * 106.11403 * 0.43657 * 5 4 3 25 25 C 1.50703 * 128.07719 * 179.85349 * 24 5 4 26 26 H 1.08997 * 109.47518 * 269.97880 * 1 2 3 27 27 H 1.09004 * 109.47219 * 29.98315 * 1 2 3 28 28 H 1.08999 * 109.47037 * 149.97825 * 1 2 3 29 29 H 0.97006 * 119.99917 * 359.97438 * 8 6 5 30 30 H 1.08996 * 109.46000 * 298.70113 * 11 9 8 31 31 H 1.09001 * 109.45658 * 58.66331 * 11 9 8 32 32 H 1.09002 * 109.50268 * 181.31690 * 12 11 9 33 33 H 1.09004 * 109.50132 * 301.38609 * 12 11 9 34 34 H 1.09006 * 109.58386 * 65.15269 * 13 12 11 35 35 H 1.08998 * 109.58910 * 185.43226 * 13 12 11 36 36 H 0.97010 * 119.99947 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.61360 * 186.64533 * 23 14 13 38 38 H 1.09000 * 109.55882 * 66.21935 * 23 14 13 39 39 H 1.08994 * 109.47308 * 269.70803 * 25 24 5 40 40 H 1.08994 * 109.47225 * 149.70738 * 25 24 5 41 41 H 1.08997 * 109.46740 * 29.71002 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4540 0.7360 -0.0005 5 6 3.6120 -0.6010 0.0052 6 6 4.8869 -1.3430 0.0126 7 8 4.8828 -2.5588 0.0141 8 7 6.0565 -0.6732 0.0176 9 6 7.3227 -1.4100 0.0244 10 1 7.2109 -2.3200 0.6141 11 6 8.4192 -0.5358 0.6371 12 6 9.7349 -1.3164 0.6748 13 6 10.1491 -1.6806 -0.7544 14 7 9.0406 -2.3970 -1.4000 15 6 9.2443 -3.6210 -1.9793 16 1 10.0295 -4.2669 -1.6152 17 6 8.4414 -4.0315 -3.0346 18 7 7.7283 -3.1487 -3.7012 19 14 8.3731 -5.8371 -3.5087 20 1 7.8841 -6.6337 -2.3548 21 1 7.4500 -6.0124 -4.6587 22 1 9.7315 -6.3006 -3.8900 23 6 7.7090 -1.7759 -1.4121 24 6 2.3513 -1.1325 -0.0005 25 6 1.9557 -2.5867 -0.0007 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 6.0598 0.2969 0.0161 30 1 8.5471 0.3626 0.0333 31 1 8.1349 -0.2542 1.6510 32 1 10.5098 -0.7016 1.1326 33 1 9.6010 -2.2273 1.2584 34 1 10.3714 -0.7715 -1.3133 35 1 11.0327 -2.3182 -0.7276 36 1 7.1669 -3.4358 -4.4385 37 1 6.9813 -2.4783 -1.8186 38 1 7.7322 -0.8749 -2.0251 39 1 1.8604 -2.9371 -1.0284 40 1 1.0016 -2.7037 0.5130 41 1 2.7190 -3.1709 0.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007577391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:24 Heat of formation + Delta-G solvation = 37.652079 kcal Electronic energy + Delta-G solvation = -24041.174404 eV Core-core repulsion = 20538.799338 eV Total energy + Delta-G solvation = -3502.375066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.00020 -39.53478 -37.38482 -35.54346 -34.19745 -32.82804 -32.53191 -30.09604 -29.41149 -28.74359 -27.95996 -25.28519 -23.82278 -22.19871 -21.87124 -21.42963 -19.97116 -19.32866 -17.92235 -17.81586 -16.79105 -15.94439 -15.62199 -15.00106 -14.39454 -14.19527 -13.97413 -13.75090 -13.70316 -13.52417 -13.11240 -13.08752 -12.97682 -12.87506 -12.46657 -12.43025 -12.33932 -11.91922 -11.16729 -11.03837 -10.83258 -10.71224 -10.51059 -10.28863 -10.14888 -9.99792 -9.95583 -9.74102 -9.56195 -9.42094 -8.67203 -8.43947 -6.67530 -5.76641 -3.19930 0.87044 1.96903 2.71757 3.23968 3.41093 3.45127 3.48430 3.50559 3.96215 4.40358 4.53538 4.77970 4.90337 5.18244 5.23485 5.32143 5.37864 5.45925 5.46359 5.52671 5.60245 5.61793 5.65922 5.75618 5.84790 6.03639 6.12363 6.22236 6.29689 6.40513 6.43043 6.65691 6.71656 6.81248 6.94828 7.23770 7.65602 7.68779 7.82599 8.06567 8.33052 8.46969 9.21585 9.85675 10.40330 11.31431 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.004719 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.815437 B = 5932.158290 C = 7140.943502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.008 3.992 3 N -0.349 5.349 4 O 0.113 5.887 5 C -0.080 4.080 6 C 0.600 3.400 7 O -0.501 6.501 8 N -0.703 5.703 9 C 0.116 3.884 10 H 0.086 0.914 11 C -0.117 4.117 12 C -0.131 4.131 13 C 0.142 3.858 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.067 0.933 17 C 0.008 3.992 18 N -0.899 5.899 19 Si 0.902 3.098 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.166 3.834 24 C -0.124 4.124 25 C -0.085 4.085 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.399 0.601 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.019 0.981 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 7.123 9.477 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 N -0.052 5.052 4 O 0.042 5.958 5 C -0.146 4.146 6 C 0.382 3.618 7 O -0.376 6.376 8 N -0.353 5.353 9 C 0.011 3.989 10 H 0.104 0.896 11 C -0.155 4.155 12 C -0.170 4.170 13 C 0.015 3.985 14 N -0.310 5.310 15 C -0.388 4.388 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.732 3.268 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.039 3.961 24 C -0.129 4.129 25 C -0.142 4.142 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.233 0.767 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.453 7.490 9.308 15.874 hybrid contribution -0.185 -0.983 -0.373 1.068 sum -10.638 6.507 8.935 15.341 Atomic orbital electron populations 1.20168 0.85500 1.03990 1.03426 1.23484 0.99117 0.88246 1.04133 1.73688 0.89417 1.24314 1.17787 1.84929 1.21228 1.22235 1.67444 1.24260 0.97443 0.83544 1.09339 1.16477 0.80944 0.86330 0.78031 1.90884 1.85551 1.11622 1.49561 1.46016 1.05783 1.10318 1.73198 1.22136 0.79905 0.94504 1.02362 0.89554 1.21683 0.95624 0.98612 0.99575 1.22003 0.95507 0.99441 1.00080 1.20966 0.91680 0.95376 0.90442 1.43950 1.02537 1.19543 1.65012 1.19116 1.17552 0.91844 1.10266 0.91564 1.25027 1.00669 0.97863 0.95601 1.70010 1.31245 1.32069 1.20991 0.86376 0.77463 0.85283 0.77693 1.20832 1.21631 1.20879 1.21114 0.88658 0.97497 0.88879 1.21460 0.90334 0.98528 1.02613 1.20320 1.02345 0.87969 1.03563 0.90088 0.90372 0.89789 0.76672 0.92011 0.92882 0.92497 0.92049 0.96331 0.92555 0.93563 0.88608 0.96244 0.90112 0.91103 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.39 36.00 0.37 -0.24 16 2 C 0.01 0.11 7.31 -82.17 -0.60 -0.50 16 3 N -0.35 -5.01 12.04 33.52 0.40 -4.61 16 4 O 0.11 1.65 11.04 15.55 0.17 1.82 16 5 C -0.08 -1.23 7.29 -36.32 -0.26 -1.50 16 6 C 0.60 10.59 7.78 -12.48 -0.10 10.49 16 7 O -0.50 -10.49 14.77 5.29 0.08 -10.42 16 8 N -0.70 -11.51 5.08 -54.74 -0.28 -11.79 16 9 C 0.12 2.19 2.60 -67.81 -0.18 2.01 16 10 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 11 C -0.12 -1.83 5.35 -26.70 -0.14 -1.97 16 12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.14 2.88 6.51 -3.71 -0.02 2.86 16 14 N -0.59 -14.70 3.00 -172.31 -0.52 -15.22 16 15 C -0.26 -7.16 9.59 -15.06 -0.14 -7.31 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 17 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 18 N -0.90 -26.61 11.19 55.49 0.62 -25.99 16 19 Si 0.90 22.23 29.59 -169.99 -5.03 17.20 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.17 3.96 4.88 -3.71 -0.02 3.94 16 24 C -0.12 -1.73 6.36 -103.99 -0.66 -2.39 16 25 C -0.09 -1.03 9.87 36.01 0.36 -0.67 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.40 5.36 8.43 -40.82 -0.34 5.02 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.10 2.69 6.04 -51.93 -0.31 2.38 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.28 6.72 -51.93 -0.35 0.93 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -32.13 339.42 -7.09 -39.23 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.01 Total: 2.09 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.65 Total: 2.56 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.23 Total: -57.60 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.25 Total: -8.60 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.13 -7.09 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007577391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.880 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds