Wall clock time and date at job start Fri Apr 10 2020 20:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30129 * 126.70702 * 2 1 4 4 O 1.20889 * 111.98518 * 180.02562 * 3 2 1 5 5 C 1.34641 * 111.46424 * 359.72110 * 4 3 2 6 6 C 1.47512 * 126.94263 * 180.29776 * 5 4 3 7 7 O 1.21581 * 120.00378 * 180.16800 * 6 5 4 8 8 N 1.34779 * 120.00000 * 0.17009 * 6 5 4 9 9 C 1.46501 * 120.00344 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.49350 * 324.99889 * 9 8 6 11 11 C 1.53035 * 109.49982 * 204.93418 * 9 8 6 12 12 C 1.53035 * 109.53965 * 178.67983 * 11 9 8 13 13 C 1.53195 * 109.31402 * 61.36392 * 12 11 9 14 14 N 1.46924 * 108.77527 * 305.37093 * 13 12 11 15 15 C 1.36941 * 120.62691 * 233.60748 * 14 13 12 16 16 H 1.07995 * 120.00527 * 27.68231 * 15 14 13 17 17 C 1.38809 * 119.99638 * 207.68298 * 15 14 13 18 18 N 1.31618 * 120.00317 * 17.34980 * 17 15 14 19 19 Si 1.86805 * 120.00005 * 197.35268 * 17 15 14 20 20 H 1.48499 * 109.47113 * 59.99525 * 19 17 15 21 21 H 1.48498 * 109.47473 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47097 * 299.99946 * 19 17 15 23 23 C 1.46934 * 118.76746 * 53.58095 * 14 13 12 24 24 C 1.36820 * 106.11403 * 0.43657 * 5 4 3 25 25 C 1.50703 * 128.07719 * 179.85349 * 24 5 4 26 26 H 1.08997 * 109.47518 * 269.97880 * 1 2 3 27 27 H 1.09004 * 109.47219 * 29.98315 * 1 2 3 28 28 H 1.08999 * 109.47037 * 149.97825 * 1 2 3 29 29 H 0.97006 * 119.99917 * 359.97438 * 8 6 5 30 30 H 1.08996 * 109.46000 * 298.70113 * 11 9 8 31 31 H 1.09001 * 109.45658 * 58.66331 * 11 9 8 32 32 H 1.09002 * 109.50268 * 181.31690 * 12 11 9 33 33 H 1.09004 * 109.50132 * 301.38609 * 12 11 9 34 34 H 1.09006 * 109.58386 * 65.15269 * 13 12 11 35 35 H 1.08998 * 109.58910 * 185.43226 * 13 12 11 36 36 H 0.97010 * 119.99947 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.61360 * 186.64533 * 23 14 13 38 38 H 1.09000 * 109.55882 * 66.21935 * 23 14 13 39 39 H 1.08994 * 109.47308 * 269.70803 * 25 24 5 40 40 H 1.08994 * 109.47225 * 149.70738 * 25 24 5 41 41 H 1.08997 * 109.46740 * 29.71002 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4540 0.7360 -0.0005 5 6 3.6120 -0.6010 0.0052 6 6 4.8869 -1.3430 0.0126 7 8 4.8828 -2.5588 0.0141 8 7 6.0565 -0.6732 0.0176 9 6 7.3227 -1.4100 0.0244 10 1 7.2109 -2.3200 0.6141 11 6 8.4192 -0.5358 0.6371 12 6 9.7349 -1.3164 0.6748 13 6 10.1491 -1.6806 -0.7544 14 7 9.0406 -2.3970 -1.4000 15 6 9.2443 -3.6210 -1.9793 16 1 10.0295 -4.2669 -1.6152 17 6 8.4414 -4.0315 -3.0346 18 7 7.7283 -3.1487 -3.7012 19 14 8.3731 -5.8371 -3.5087 20 1 7.8841 -6.6337 -2.3548 21 1 7.4500 -6.0124 -4.6587 22 1 9.7315 -6.3006 -3.8900 23 6 7.7090 -1.7759 -1.4121 24 6 2.3513 -1.1325 -0.0005 25 6 1.9557 -2.5867 -0.0007 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 6.0598 0.2969 0.0161 30 1 8.5471 0.3626 0.0333 31 1 8.1349 -0.2542 1.6510 32 1 10.5098 -0.7016 1.1326 33 1 9.6010 -2.2273 1.2584 34 1 10.3714 -0.7715 -1.3133 35 1 11.0327 -2.3182 -0.7276 36 1 7.1669 -3.4358 -4.4385 37 1 6.9813 -2.4783 -1.8186 38 1 7.7322 -0.8749 -2.0251 39 1 1.8604 -2.9371 -1.0284 40 1 1.0016 -2.7037 0.5130 41 1 2.7190 -3.1709 0.5131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007577391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:23 Heat of formation + Delta-G solvation = 16.137695 kcal Electronic energy + Delta-G solvation = -24042.107338 eV Core-core repulsion = 20538.799338 eV Total energy + Delta-G solvation = -3503.308000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.07694 -41.01049 -39.00407 -36.61227 -35.81909 -34.50871 -33.72378 -31.93049 -30.81707 -29.68955 -29.07768 -27.24298 -25.17701 -23.93253 -23.07178 -22.76431 -21.41398 -20.79207 -19.15565 -18.92968 -18.71930 -17.38898 -16.96009 -16.77711 -15.99308 -15.81704 -15.39832 -15.26280 -14.78271 -14.69985 -14.48467 -14.16178 -14.10621 -14.01593 -13.89061 -13.81448 -13.49400 -13.24472 -12.93096 -12.64511 -12.53196 -12.28779 -12.17988 -12.07467 -11.73872 -11.64423 -11.29139 -11.23947 -10.98626 -10.62466 -10.54756 -10.18651 -8.69725 -7.89236 -5.34918 -0.33484 0.94874 1.42304 1.46582 1.48339 1.52833 1.87938 2.15448 2.50236 3.01747 3.26669 3.38034 3.63734 3.79638 3.85814 3.93989 4.13531 4.18719 4.26321 4.47361 4.56177 4.59359 4.66438 4.69591 4.77088 4.82107 4.84281 4.90862 5.07112 5.10441 5.17162 5.20132 5.26856 5.31061 5.35829 5.52641 5.62032 5.74322 6.27821 6.38980 6.92290 7.00760 7.12617 7.84749 8.33959 9.15739 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.004719 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.815437 B = 5932.158290 C = 7140.943502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.019 3.981 3 N -0.363 5.363 4 O 0.107 5.893 5 C -0.100 4.100 6 C 0.600 3.400 7 O -0.542 6.542 8 N -0.693 5.693 9 C 0.131 3.869 10 H 0.063 0.937 11 C -0.109 4.109 12 C -0.120 4.120 13 C 0.134 3.866 14 N -0.609 5.609 15 C -0.267 4.267 16 H 0.070 0.930 17 C -0.048 4.048 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.177 3.823 24 C -0.123 4.123 25 C -0.084 4.084 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.416 0.584 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.056 0.944 36 H 0.247 0.753 37 H 0.047 0.953 38 H 0.000 1.000 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.963 7.987 11.131 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.140 4.140 3 N -0.068 5.068 4 O 0.037 5.963 5 C -0.166 4.166 6 C 0.384 3.616 7 O -0.420 6.420 8 N -0.344 5.344 9 C 0.025 3.975 10 H 0.081 0.919 11 C -0.147 4.147 12 C -0.160 4.160 13 C 0.009 3.991 14 N -0.333 5.333 15 C -0.397 4.397 16 H 0.087 0.913 17 C -0.244 4.244 18 N -0.578 5.578 19 Si 0.789 3.211 20 H -0.208 1.208 21 H -0.221 1.221 22 H -0.194 1.194 23 C 0.050 3.950 24 C -0.128 4.128 25 C -0.141 4.141 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.253 0.747 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.213 8.400 10.991 17.807 hybrid contribution 0.034 -1.209 -0.883 1.498 sum -11.179 7.191 10.108 16.699 Atomic orbital electron populations 1.20427 0.82194 1.05408 1.05193 1.24127 1.00937 0.86932 1.01997 1.73676 0.89461 1.25045 1.18618 1.84916 1.21658 1.21520 1.68168 1.23901 0.96924 0.84252 1.11514 1.16740 0.81860 0.86035 0.77012 1.90860 1.86340 1.13421 1.51335 1.45843 1.04846 1.11040 1.72659 1.21688 0.82021 0.95128 0.98639 0.91860 1.21670 0.93669 0.97942 1.01397 1.21897 0.96947 1.00077 0.97042 1.21194 0.90417 0.94897 0.92560 1.44235 1.04178 1.19467 1.65376 1.19491 1.17129 0.93221 1.09832 0.91261 1.25771 1.01000 1.01491 0.96098 1.70171 1.32349 1.33652 1.21601 0.85429 0.77805 0.80856 0.76974 1.20832 1.22095 1.19382 1.20808 0.87541 0.95104 0.91564 1.21867 0.90061 0.99770 1.01115 1.20383 1.03475 0.86472 1.03780 0.87984 0.89546 0.87813 0.74743 0.90731 0.89367 0.88382 0.92670 0.96144 0.92510 0.94362 0.93413 0.98241 0.90052 0.87329 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.39 71.23 0.74 -0.25 16 2 C 0.02 0.43 7.31 43.55 0.32 0.75 16 3 N -0.36 -9.96 12.04 -48.85 -0.59 -10.54 16 4 O 0.11 3.06 11.04 65.84 0.73 3.79 16 5 C -0.10 -3.11 7.29 24.38 0.18 -2.93 16 6 C 0.60 21.81 7.78 86.69 0.67 22.48 16 7 O -0.54 -23.81 14.77 -3.97 -0.06 -23.86 16 8 N -0.69 -22.89 5.08 -445.37 -2.26 -25.15 16 9 C 0.13 4.98 2.60 45.07 0.12 5.10 16 10 H 0.06 2.73 7.58 -2.38 -0.02 2.71 16 11 C -0.11 -3.14 5.35 30.62 0.16 -2.97 16 12 C -0.12 -3.63 6.08 30.67 0.19 -3.45 16 13 C 0.13 5.35 6.51 86.36 0.56 5.91 16 14 N -0.61 -31.08 3.00 -699.08 -2.09 -33.18 16 15 C -0.27 -15.13 9.59 84.03 0.81 -14.32 16 16 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -2.79 4.91 84.86 0.42 -2.38 16 18 N -0.93 -57.56 11.19 21.65 0.24 -57.32 16 19 Si 0.96 46.92 29.59 68.60 2.03 48.95 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 C 0.18 8.79 4.88 86.36 0.42 9.21 16 24 C -0.12 -3.32 6.36 -19.45 -0.12 -3.44 16 25 C -0.08 -1.95 9.87 71.24 0.70 -1.25 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.42 10.90 8.43 -92.70 -0.78 10.12 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.06 2.21 7.94 -2.39 -0.02 2.20 16 36 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 37 H 0.05 2.83 6.04 -2.39 -0.01 2.82 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.97 6.72 -2.39 -0.02 1.96 16 Total: -1.00 -73.69 339.42 3.43 -70.26 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.26 Total: 14.59 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.16 Total: 12.47 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -4.70 Total: -126.19 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.67 Total: -20.07 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -73.69 3.43 -70.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007577391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.399 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds