Wall clock time and date at job start Fri Apr 10 2020 20:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30133 * 126.70331 * 2 1 4 4 O 1.20887 * 111.98391 * 179.97438 * 3 2 1 5 5 C 1.34641 * 111.46629 * 359.97438 * 4 3 2 6 6 C 1.47512 * 126.94555 * 180.02562 * 5 4 3 7 7 O 1.21582 * 120.00540 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99728 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99980 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.49659 * 35.06897 * 9 8 6 11 11 C 1.53041 * 109.49789 * 155.16047 * 9 8 6 12 12 C 1.53046 * 109.54020 * 181.31839 * 11 9 8 13 13 C 1.53188 * 109.31236 * 298.63752 * 12 11 9 14 14 N 1.46931 * 108.77552 * 54.63381 * 13 12 11 15 15 C 1.36934 * 120.63022 * 126.41298 * 14 13 12 16 16 H 1.08001 * 120.00086 * 207.66370 * 15 14 13 17 17 C 1.38821 * 120.00005 * 27.66378 * 15 14 13 18 18 N 1.31619 * 119.99627 * 17.36811 * 17 15 14 19 19 Si 1.86792 * 119.99920 * 197.36833 * 17 15 14 20 20 H 1.48497 * 109.47442 * 89.99954 * 19 17 15 21 21 H 1.48502 * 109.47400 * 209.99884 * 19 17 15 22 22 H 1.48502 * 109.47262 * 330.00010 * 19 17 15 23 23 C 1.46929 * 118.73709 * 306.39141 * 14 13 12 24 24 C 1.36824 * 106.11453 * 0.02562 * 5 4 3 25 25 C 1.50704 * 128.07805 * 179.97438 * 24 5 4 26 26 H 1.08997 * 109.47258 * 90.02851 * 1 2 3 27 27 H 1.08999 * 109.47344 * 210.02516 * 1 2 3 28 28 H 1.09003 * 109.47555 * 330.02601 * 1 2 3 29 29 H 0.97003 * 120.00366 * 0.02562 * 8 6 5 30 30 H 1.09004 * 109.46328 * 301.34415 * 11 9 8 31 31 H 1.09007 * 109.46077 * 61.30058 * 11 9 8 32 32 H 1.08992 * 109.49519 * 178.68686 * 12 11 9 33 33 H 1.08992 * 109.49173 * 58.58880 * 12 11 9 34 34 H 1.09005 * 109.58823 * 294.84999 * 13 12 11 35 35 H 1.08992 * 109.58669 * 174.42266 * 13 12 11 36 36 H 0.97004 * 119.99486 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.58256 * 293.81590 * 23 14 13 38 38 H 1.08997 * 109.58142 * 173.39687 * 23 14 13 39 39 H 1.09006 * 109.46530 * 90.00527 * 25 24 5 40 40 H 1.08996 * 109.46835 * 209.99958 * 25 24 5 41 41 H 1.08996 * 109.47179 * 330.00011 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7362 0.0005 5 6 3.6121 -0.6009 0.0015 6 6 4.8870 -1.3429 0.0028 7 8 4.8829 -2.5587 0.0041 8 7 6.0565 -0.6730 0.0027 9 6 7.3227 -1.4098 0.0046 10 1 7.2146 -2.3205 -0.5845 11 6 8.4231 -0.5361 -0.6019 12 6 9.7392 -1.3168 -0.6305 13 6 10.1442 -1.6797 0.8016 14 7 9.0316 -2.3956 1.4407 15 6 9.2317 -3.6189 2.0226 16 1 8.4184 -4.3267 2.0851 17 6 10.4800 -3.9492 2.5323 18 7 11.3638 -3.0039 2.7726 19 14 10.9053 -5.7351 2.8771 20 1 11.5145 -6.3416 1.6662 21 1 11.8694 -5.8057 4.0044 22 1 9.6702 -6.4779 3.2348 23 6 7.7004 -1.7738 1.4438 24 6 2.3513 -1.1325 0.0010 25 6 1.9558 -2.5867 0.0011 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 6.0599 0.2970 0.0021 30 1 8.1453 -0.2552 -1.6178 31 1 8.5472 0.3629 0.0020 32 1 10.5168 -0.7023 -1.0839 33 1 9.6087 -2.2282 -1.2138 34 1 10.3628 -0.7701 1.3611 35 1 11.0264 -2.3193 0.7808 36 1 12.2360 -3.2347 3.1291 37 1 7.7198 -0.8720 2.0558 38 1 6.9703 -2.4757 1.8469 39 1 1.8598 -2.9369 1.0289 40 1 1.0019 -2.7038 -0.5132 41 1 2.7194 -3.1710 -0.5122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007577393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:26 Heat of formation + Delta-G solvation = 37.007638 kcal Electronic energy + Delta-G solvation = -23696.294894 eV Core-core repulsion = 20193.891883 eV Total energy + Delta-G solvation = -3502.403011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.13940 -39.73109 -37.44776 -35.67290 -34.39058 -32.89719 -32.35354 -30.48797 -29.43273 -28.79315 -28.01558 -25.30221 -23.93495 -22.15618 -22.00754 -21.55680 -20.13199 -19.38821 -18.04006 -17.95271 -16.81507 -16.01481 -15.78601 -14.90063 -14.78521 -14.30605 -13.97080 -13.85068 -13.81608 -13.48347 -13.24717 -13.20329 -13.11313 -12.98418 -12.58651 -12.42906 -12.41291 -11.86304 -11.29517 -11.13718 -10.92726 -10.82426 -10.28497 -10.26275 -10.23193 -10.12044 -9.92848 -9.71199 -9.68365 -9.56541 -8.93656 -8.42480 -6.69454 -5.79025 -3.21420 0.71387 1.83965 2.56452 3.03870 3.26007 3.40188 3.46898 3.49124 3.83818 4.27227 4.51154 4.64339 4.76250 5.05020 5.14181 5.24537 5.33393 5.35475 5.36465 5.47805 5.51026 5.58477 5.62939 5.67482 5.72589 6.02656 6.04394 6.11591 6.21514 6.45723 6.55971 6.59860 6.65033 6.79669 6.91811 7.34212 7.46967 7.63951 7.82599 7.92502 8.12671 8.44878 9.21212 9.83306 10.38743 11.29700 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.003579 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.363287 B = 7820.597656 C = 8561.255849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.347 5.347 4 O 0.114 5.886 5 C -0.084 4.084 6 C 0.601 3.399 7 O -0.505 6.505 8 N -0.705 5.705 9 C 0.125 3.875 10 H 0.091 0.909 11 C -0.116 4.116 12 C -0.139 4.139 13 C 0.166 3.834 14 N -0.587 5.587 15 C -0.252 4.252 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.278 1.278 23 C 0.141 3.859 24 C -0.122 4.122 25 C -0.085 4.085 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.402 0.598 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.020 0.980 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 6.948 -7.851 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 N -0.049 5.049 4 O 0.043 5.957 5 C -0.150 4.150 6 C 0.383 3.617 7 O -0.381 6.381 8 N -0.355 5.355 9 C 0.020 3.980 10 H 0.109 0.891 11 C -0.154 4.154 12 C -0.179 4.179 13 C 0.040 3.960 14 N -0.310 5.310 15 C -0.381 4.381 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.013 3.987 24 C -0.127 4.127 25 C -0.142 4.142 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.236 0.764 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.964 7.327 -7.754 20.040 hybrid contribution 0.226 -0.952 0.238 1.007 sum -16.738 6.375 -7.516 19.424 Atomic orbital electron populations 1.20179 0.85414 1.04034 1.03529 1.23509 0.99187 0.88195 1.04088 1.73707 0.89380 1.24282 1.17573 1.84940 1.21268 1.22146 1.67396 1.24200 0.97334 0.83667 1.09813 1.16500 0.80979 0.86313 0.77872 1.90876 1.85675 1.11656 1.49851 1.46085 1.05758 1.10563 1.73099 1.21907 0.80046 0.95122 1.00929 0.89130 1.21695 0.95696 0.98537 0.99457 1.22179 0.94913 0.99049 1.01744 1.20865 0.92250 0.95867 0.86969 1.44005 1.03024 1.19816 1.64131 1.19240 0.96863 0.90224 1.31811 0.91457 1.25029 0.98347 0.97643 0.98572 1.70043 1.07087 1.30583 1.47067 0.86260 0.78041 0.84876 0.77456 1.21385 1.21793 1.20350 1.21192 0.89309 0.96577 0.91596 1.21477 0.90310 0.98561 1.02367 1.20329 1.02485 0.87893 1.03520 0.90014 0.89757 0.90314 0.76403 0.92877 0.91994 0.92574 0.92346 0.96214 0.89183 0.93631 0.96245 0.92247 0.90116 0.90989 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.39 36.00 0.37 -0.15 16 2 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 3 N -0.35 -4.48 12.04 33.52 0.40 -4.08 16 4 O 0.11 1.48 11.04 15.55 0.17 1.65 16 5 C -0.08 -1.13 7.29 -36.32 -0.26 -1.40 16 6 C 0.60 9.20 7.78 -12.48 -0.10 9.10 16 7 O -0.51 -9.23 14.78 5.29 0.08 -9.15 16 8 N -0.71 -10.10 5.08 -54.74 -0.28 -10.38 16 9 C 0.12 2.16 2.60 -67.82 -0.18 1.98 16 10 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 11 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 12 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 13 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 14 N -0.59 -14.68 3.00 -172.32 -0.52 -15.20 16 15 C -0.25 -6.99 9.59 -15.06 -0.14 -7.14 16 16 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 17 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 18 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 19 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.14 3.00 6.09 -3.71 -0.02 2.98 16 24 C -0.12 -1.48 6.36 -103.98 -0.66 -2.14 16 25 C -0.09 -0.87 9.86 36.01 0.36 -0.51 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.40 4.68 8.43 -40.82 -0.34 4.33 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 1.35 7.93 -51.93 -0.41 0.93 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.10 6.73 -51.93 -0.35 0.75 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -31.34 339.43 -7.09 -38.43 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.01 Total: 0.81 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.65 Total: 1.42 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.23 Total: -55.11 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.25 Total: -7.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.34 -7.09 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007577393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.438 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds