Wall clock time and date at job start Fri Apr 10 2020 20:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30133 * 126.70331 * 2 1 4 4 O 1.20887 * 111.98391 * 179.97438 * 3 2 1 5 5 C 1.34641 * 111.46629 * 359.97438 * 4 3 2 6 6 C 1.47512 * 126.94555 * 180.02562 * 5 4 3 7 7 O 1.21582 * 120.00540 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99728 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99980 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.49659 * 35.06897 * 9 8 6 11 11 C 1.53041 * 109.49789 * 155.16047 * 9 8 6 12 12 C 1.53046 * 109.54020 * 181.31839 * 11 9 8 13 13 C 1.53188 * 109.31236 * 298.63752 * 12 11 9 14 14 N 1.46931 * 108.77552 * 54.63381 * 13 12 11 15 15 C 1.36934 * 120.63022 * 126.41298 * 14 13 12 16 16 H 1.08001 * 120.00086 * 207.66370 * 15 14 13 17 17 C 1.38821 * 120.00005 * 27.66378 * 15 14 13 18 18 N 1.31619 * 119.99627 * 17.36811 * 17 15 14 19 19 Si 1.86792 * 119.99920 * 197.36833 * 17 15 14 20 20 H 1.48497 * 109.47442 * 89.99954 * 19 17 15 21 21 H 1.48502 * 109.47400 * 209.99884 * 19 17 15 22 22 H 1.48502 * 109.47262 * 330.00010 * 19 17 15 23 23 C 1.46929 * 118.73709 * 306.39141 * 14 13 12 24 24 C 1.36824 * 106.11453 * 0.02562 * 5 4 3 25 25 C 1.50704 * 128.07805 * 179.97438 * 24 5 4 26 26 H 1.08997 * 109.47258 * 90.02851 * 1 2 3 27 27 H 1.08999 * 109.47344 * 210.02516 * 1 2 3 28 28 H 1.09003 * 109.47555 * 330.02601 * 1 2 3 29 29 H 0.97003 * 120.00366 * 0.02562 * 8 6 5 30 30 H 1.09004 * 109.46328 * 301.34415 * 11 9 8 31 31 H 1.09007 * 109.46077 * 61.30058 * 11 9 8 32 32 H 1.08992 * 109.49519 * 178.68686 * 12 11 9 33 33 H 1.08992 * 109.49173 * 58.58880 * 12 11 9 34 34 H 1.09005 * 109.58823 * 294.84999 * 13 12 11 35 35 H 1.08992 * 109.58669 * 174.42266 * 13 12 11 36 36 H 0.97004 * 119.99486 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.58256 * 293.81590 * 23 14 13 38 38 H 1.08997 * 109.58142 * 173.39687 * 23 14 13 39 39 H 1.09006 * 109.46530 * 90.00527 * 25 24 5 40 40 H 1.08996 * 109.46835 * 209.99958 * 25 24 5 41 41 H 1.08996 * 109.47179 * 330.00011 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7362 0.0005 5 6 3.6121 -0.6009 0.0015 6 6 4.8870 -1.3429 0.0028 7 8 4.8829 -2.5587 0.0041 8 7 6.0565 -0.6730 0.0027 9 6 7.3227 -1.4098 0.0046 10 1 7.2146 -2.3205 -0.5845 11 6 8.4231 -0.5361 -0.6019 12 6 9.7392 -1.3168 -0.6305 13 6 10.1442 -1.6797 0.8016 14 7 9.0316 -2.3956 1.4407 15 6 9.2317 -3.6189 2.0226 16 1 8.4184 -4.3267 2.0851 17 6 10.4800 -3.9492 2.5323 18 7 11.3638 -3.0039 2.7726 19 14 10.9053 -5.7351 2.8771 20 1 11.5145 -6.3416 1.6662 21 1 11.8694 -5.8057 4.0044 22 1 9.6702 -6.4779 3.2348 23 6 7.7004 -1.7738 1.4438 24 6 2.3513 -1.1325 0.0010 25 6 1.9558 -2.5867 0.0011 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 6.0599 0.2970 0.0021 30 1 8.1453 -0.2552 -1.6178 31 1 8.5472 0.3629 0.0020 32 1 10.5168 -0.7023 -1.0839 33 1 9.6087 -2.2282 -1.2138 34 1 10.3628 -0.7701 1.3611 35 1 11.0264 -2.3193 0.7808 36 1 12.2360 -3.2347 3.1291 37 1 7.7198 -0.8720 2.0558 38 1 6.9703 -2.4757 1.8469 39 1 1.8598 -2.9369 1.0289 40 1 1.0019 -2.7038 -0.5132 41 1 2.7194 -3.1710 -0.5122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007577393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:26 Heat of formation + Delta-G solvation = 16.593100 kcal Electronic energy + Delta-G solvation = -23697.180135 eV Core-core repulsion = 20193.891883 eV Total energy + Delta-G solvation = -3503.288252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.07453 -41.04856 -39.02927 -36.62194 -35.91783 -34.28913 -33.63566 -32.34424 -30.69810 -29.66557 -29.03681 -27.25872 -25.17282 -23.88714 -23.14938 -22.78324 -21.41700 -20.84052 -19.13504 -18.91733 -18.71178 -17.34646 -16.95215 -16.76180 -16.19185 -15.80162 -15.41402 -15.21561 -14.83409 -14.70341 -14.46832 -14.22148 -14.09739 -14.01597 -13.87291 -13.79641 -13.42528 -13.23195 -13.02607 -12.75457 -12.58381 -12.16463 -12.12544 -11.96879 -11.80116 -11.62456 -11.33444 -11.26726 -10.97361 -10.66475 -10.56545 -10.19513 -8.70605 -7.90181 -5.35736 -0.32854 0.95961 1.45338 1.46849 1.47967 1.56633 1.85619 2.12524 2.51196 3.03079 3.24246 3.37994 3.63523 3.75622 3.85856 3.88775 4.09245 4.20197 4.24279 4.47434 4.54320 4.57716 4.67906 4.71943 4.78002 4.80604 4.87168 4.90003 5.00408 5.06027 5.11347 5.13537 5.26044 5.30072 5.38057 5.54243 5.63929 5.77072 6.27613 6.37090 6.90827 7.01049 7.13167 7.82209 8.32178 9.15672 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.003579 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.363287 B = 7820.597656 C = 8561.255849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.016 3.984 3 N -0.364 5.364 4 O 0.108 5.892 5 C -0.102 4.102 6 C 0.604 3.396 7 O -0.540 6.540 8 N -0.694 5.694 9 C 0.142 3.858 10 H 0.070 0.930 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.170 3.830 14 N -0.606 5.606 15 C -0.268 4.268 16 H 0.057 0.943 17 C -0.044 4.044 18 N -0.930 5.930 19 Si 0.966 3.034 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.273 1.273 23 C 0.143 3.857 24 C -0.120 4.120 25 C -0.085 4.085 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.418 0.582 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.056 0.944 36 H 0.252 0.748 37 H 0.020 0.980 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 7.648 -9.043 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.142 4.142 3 N -0.068 5.068 4 O 0.038 5.962 5 C -0.167 4.167 6 C 0.388 3.612 7 O -0.418 6.418 8 N -0.344 5.344 9 C 0.036 3.964 10 H 0.089 0.911 11 C -0.145 4.145 12 C -0.168 4.168 13 C 0.045 3.955 14 N -0.330 5.330 15 C -0.398 4.398 16 H 0.075 0.925 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.198 1.198 23 C 0.016 3.984 24 C -0.125 4.125 25 C -0.141 4.141 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.255 0.745 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.877 8.071 -8.963 22.401 hybrid contribution 0.711 -1.142 0.648 1.493 sum -18.166 6.930 -8.315 21.146 Atomic orbital electron populations 1.20419 0.82397 1.05400 1.05091 1.24124 1.00896 0.87072 1.02157 1.73698 0.89523 1.25092 1.18493 1.84925 1.21572 1.21621 1.68049 1.23876 0.96872 0.84223 1.11767 1.16679 0.81666 0.85996 0.76891 1.90861 1.86328 1.13231 1.51336 1.45846 1.04612 1.11216 1.72772 1.21424 0.81909 0.95413 0.97628 0.91142 1.21641 0.93261 0.97907 1.01642 1.22007 0.97203 0.99739 0.97832 1.20746 0.90832 0.94094 0.89873 1.44231 1.04643 1.19555 1.64575 1.19439 0.96906 0.91463 1.31963 0.92514 1.25734 0.98203 1.01311 0.98789 1.70176 1.07198 1.32235 1.47952 0.85288 0.77679 0.80409 0.77213 1.20840 1.21737 1.19836 1.21227 0.87232 0.95591 0.94375 1.21869 0.90009 0.99740 1.00892 1.20398 1.03422 0.86341 1.03987 0.88206 0.87715 0.89662 0.74508 0.89252 0.90625 0.89689 0.93038 0.97778 0.92603 0.93892 0.96178 0.94592 0.89610 0.87686 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.39 71.23 0.74 -0.07 16 2 C 0.02 0.32 7.31 43.55 0.32 0.64 16 3 N -0.36 -8.80 12.04 -48.85 -0.59 -9.39 16 4 O 0.11 2.69 11.04 65.83 0.73 3.41 16 5 C -0.10 -2.66 7.29 24.39 0.18 -2.48 16 6 C 0.60 18.39 7.78 86.69 0.67 19.06 16 7 O -0.54 -20.09 14.78 -3.97 -0.06 -20.15 16 8 N -0.69 -19.27 5.08 -445.38 -2.26 -21.53 16 9 C 0.14 4.84 2.60 45.07 0.12 4.96 16 10 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16 11 C -0.11 -3.07 5.35 30.62 0.16 -2.91 16 12 C -0.13 -4.48 6.08 30.67 0.19 -4.29 16 13 C 0.17 8.02 5.31 86.36 0.46 8.48 16 14 N -0.61 -31.17 3.00 -699.09 -2.09 -33.27 16 15 C -0.27 -15.32 9.59 84.04 0.81 -14.52 16 16 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 17 C -0.04 -2.53 4.91 84.86 0.42 -2.11 16 18 N -0.93 -55.09 11.19 21.65 0.24 -54.85 16 19 Si 0.97 45.82 29.59 68.60 2.03 47.85 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.14 6.21 6.09 86.36 0.53 6.74 16 24 C -0.12 -2.72 6.36 -19.45 -0.12 -2.84 16 25 C -0.08 -1.58 9.86 71.24 0.70 -0.88 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.42 9.01 8.43 -92.71 -0.78 8.23 16 30 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.06 3.01 6.04 -2.39 -0.01 2.99 16 36 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 37 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 39 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.68 6.73 -2.39 -0.02 1.66 16 Total: -1.00 -70.29 339.43 3.42 -66.87 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.26 Total: 11.29 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.16 Total: 9.77 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -4.70 Total: -119.04 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.67 Total: -16.73 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.29 3.42 -66.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007577393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.460 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds