Wall clock time and date at job start Fri Apr 10 2020 20:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46683 * 2 1 4 4 N 1.33687 * 126.27029 * 269.95910 * 3 2 1 5 5 C 1.30617 * 108.99462 * 180.02562 * 4 3 2 6 6 O 1.33668 * 109.15383 * 359.72516 * 5 4 3 7 7 C 1.35345 * 107.68334 * 0.43796 * 6 5 4 8 8 C 1.46721 * 126.64521 * 179.84228 * 7 6 5 9 9 O 1.21689 * 119.99926 * 179.68981 * 8 7 6 10 10 N 1.34775 * 119.99867 * 359.68224 * 8 7 6 11 11 C 1.46501 * 119.99806 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.49441 * 35.07161 * 11 10 8 13 13 C 1.53041 * 109.52298 * 155.11720 * 11 10 8 14 14 C 1.53041 * 109.54046 * 181.30412 * 13 11 10 15 15 C 1.53190 * 109.33525 * 298.68225 * 14 13 11 16 16 N 1.46927 * 108.77907 * 54.61787 * 15 14 13 17 17 C 1.36943 * 120.63244 * 126.41208 * 16 15 14 18 18 H 1.08003 * 119.99728 * 332.60653 * 17 16 15 19 19 C 1.38803 * 120.00050 * 152.60283 * 17 16 15 20 20 N 1.31627 * 119.99924 * 159.35284 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 339.35942 * 19 17 16 22 22 H 1.48495 * 109.47249 * 92.92243 * 21 19 17 23 23 H 1.48505 * 109.47030 * 212.92214 * 21 19 17 24 24 H 1.48494 * 109.47189 * 332.91628 * 21 19 17 25 25 C 1.46921 * 118.73949 * 306.39545 * 16 15 14 26 26 H 1.08995 * 109.47375 * 60.00246 * 1 2 3 27 27 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47301 * 299.99736 * 1 2 3 29 29 H 1.08997 * 109.47070 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.46946 * 119.99809 * 2 1 3 31 31 H 1.07997 * 125.42841 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00231 * 0.02562 * 10 8 7 33 33 H 1.08999 * 109.43297 * 61.29658 * 13 11 10 34 34 H 1.09002 * 109.48195 * 301.33799 * 13 11 10 35 35 H 1.08999 * 109.49567 * 178.71741 * 14 13 11 36 36 H 1.08997 * 109.49657 * 58.64812 * 14 13 11 37 37 H 1.09002 * 109.58656 * 174.40749 * 15 14 13 38 38 H 1.09001 * 109.58937 * 294.68990 * 15 14 13 39 39 H 0.96999 * 119.99921 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.59035 * 173.39656 * 25 16 15 41 41 H 1.09003 * 109.58464 * 293.82038 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2966 2.1663 -1.0778 5 6 2.7125 3.3422 -0.6899 6 8 2.7208 3.3857 0.6460 7 6 2.3008 2.1815 1.0992 8 6 2.1563 1.7755 2.5017 9 8 1.7606 0.6574 2.7737 10 7 2.4620 2.6409 3.4887 11 6 2.3182 2.2352 4.8890 12 1 2.5713 1.1798 4.9899 13 6 3.2570 3.0707 5.7625 14 6 3.1309 2.6250 7.2211 15 6 1.6936 2.8538 7.6989 16 7 0.7746 2.1712 6.7779 17 6 -0.1549 1.2833 7.2502 18 1 0.0319 0.7421 8.1659 19 6 -1.3370 1.0790 6.5520 20 7 -2.0341 -0.0206 6.7456 21 14 -1.9386 2.3645 5.3375 22 1 -1.4415 2.0322 3.9782 23 1 -3.4235 2.3827 5.3309 24 1 -1.4291 3.7006 5.7380 25 6 0.8716 2.4596 5.3405 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.9990 4.1521 -1.3443 32 1 2.7771 3.5322 3.2718 33 1 2.9880 4.1237 5.6799 34 1 4.2850 2.9313 5.4278 35 1 3.8164 3.2049 7.8392 36 1 3.3765 1.5661 7.3005 37 1 1.5732 2.4473 8.7031 38 1 1.4774 3.9222 7.7089 39 1 -2.8604 -0.1632 6.2580 40 1 0.2090 1.7930 4.7885 41 1 0.5878 3.4957 5.1557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008475410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:33 Heat of formation + Delta-G solvation = 6.663153 kcal Electronic energy + Delta-G solvation = -24402.470971 eV Core-core repulsion = 20898.752125 eV Total energy + Delta-G solvation = -3503.718847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.58220 -39.67103 -37.67088 -35.86669 -34.34167 -33.00041 -32.74212 -30.74584 -30.26140 -28.81067 -25.32462 -24.77353 -23.71688 -22.82644 -22.05881 -21.04617 -20.46997 -19.64270 -18.14076 -17.02326 -16.83425 -16.61346 -16.04166 -15.34153 -14.94556 -14.52921 -14.32117 -14.12041 -13.86849 -13.78361 -13.41993 -13.22098 -12.82839 -12.72202 -12.40740 -12.23321 -11.64093 -11.52888 -11.26520 -11.17473 -11.04771 -10.92709 -10.77872 -10.64751 -10.30071 -10.25452 -9.89063 -9.81067 -9.48215 -9.16059 -8.91030 -8.53256 -6.98862 -5.93773 -3.30340 0.73647 2.29666 2.33692 3.13713 3.23859 3.37015 3.48227 3.50492 3.85855 4.54976 4.57745 4.67614 5.00285 5.08303 5.21722 5.25781 5.31628 5.41418 5.43022 5.44519 5.46586 5.65404 5.76344 5.89796 5.96717 5.98289 6.04037 6.15716 6.22551 6.22804 6.34519 6.38773 6.45351 6.56765 6.61374 6.71674 6.88550 7.31545 7.58362 7.95446 8.18290 8.34086 8.93328 9.72775 10.08165 11.21951 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.005738 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.016744 B = 4878.564556 C = 5938.563167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C 0.079 3.921 4 N -0.491 5.491 5 C 0.193 3.807 6 O -0.193 6.193 7 C -0.106 4.106 8 C 0.600 3.400 9 O -0.497 6.497 10 N -0.712 5.712 11 C 0.125 3.875 12 H 0.096 0.904 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.145 3.855 16 N -0.600 5.600 17 C -0.265 4.265 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.272 1.272 25 C 0.120 3.880 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.255 0.745 32 H 0.399 0.601 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.337 8.345 -12.220 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.045 4.045 4 N -0.220 5.220 5 C -0.033 4.033 6 O -0.079 6.079 7 C -0.161 4.161 8 C 0.384 3.616 9 O -0.372 6.372 10 N -0.363 5.363 11 C 0.020 3.980 12 H 0.114 0.886 13 C -0.155 4.155 14 C -0.172 4.172 15 C 0.019 3.981 16 N -0.324 5.324 17 C -0.393 4.393 18 H 0.105 0.895 19 C -0.170 4.170 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.197 1.197 25 C -0.007 4.007 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.271 0.729 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.830 7.297 -12.570 18.740 hybrid contribution -0.158 1.650 -0.463 1.721 sum 11.672 8.947 -13.033 19.650 Atomic orbital electron populations 1.21652 0.93644 1.02577 1.02072 1.20184 0.96829 0.87584 1.04382 1.22089 0.97708 0.98402 0.86263 1.70322 1.16797 1.03322 1.31541 1.28280 0.97835 0.97643 0.79507 1.84480 1.64982 1.33991 1.24415 1.23168 1.11486 0.84853 0.96612 1.16368 0.78700 0.85291 0.81221 1.90942 1.45402 1.19489 1.81399 1.46055 1.66940 1.16464 1.06796 1.21904 0.98367 1.00606 0.77160 0.88600 1.21687 0.98200 0.99387 0.96192 1.22002 0.99196 1.01654 0.94319 1.20993 0.87910 0.95083 0.94128 1.44280 1.38972 1.49562 0.99576 1.18892 0.95037 1.14990 1.10341 0.89470 1.25245 0.96470 0.97008 0.98248 1.69832 1.17035 1.23906 1.43704 0.87008 0.77061 0.83790 0.81291 1.21481 1.23039 1.19724 1.21705 0.93903 0.98616 0.86505 0.92894 0.91453 0.92108 0.90168 0.87976 0.72940 0.76723 0.92009 0.92318 0.92023 0.91533 0.91550 0.95872 0.92708 0.90193 0.95764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.05 -0.73 5.92 -27.88 -0.17 -0.89 16 3 C 0.08 1.16 6.41 -82.46 -0.53 0.63 16 4 N -0.49 -6.35 11.26 -10.88 -0.12 -6.47 16 5 C 0.19 1.84 13.21 52.25 0.69 2.53 16 6 O -0.19 -2.29 10.57 4.41 0.05 -2.24 16 7 C -0.11 -1.58 7.18 -36.84 -0.26 -1.85 16 8 C 0.60 10.42 7.75 -12.84 -0.10 10.32 16 9 O -0.50 -10.31 14.46 5.20 0.08 -10.24 16 10 N -0.71 -11.14 5.08 -54.98 -0.28 -11.41 16 11 C 0.12 2.24 2.60 -67.81 -0.18 2.06 16 12 H 0.10 1.95 7.58 -51.93 -0.39 1.56 16 13 C -0.12 -1.67 5.36 -26.69 -0.14 -1.82 16 14 C -0.13 -2.01 6.08 -26.61 -0.16 -2.17 16 15 C 0.14 2.74 6.52 -3.71 -0.02 2.72 16 16 N -0.60 -14.32 2.77 -172.32 -0.48 -14.80 16 17 C -0.26 -7.50 10.03 -15.06 -0.15 -7.65 16 18 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 19 C 0.03 0.89 5.23 -17.43 -0.09 0.80 16 20 N -0.90 -28.29 13.97 55.49 0.78 -27.51 16 21 Si 0.88 23.23 24.34 -169.99 -4.14 19.10 16 22 H -0.29 -7.61 6.62 56.52 0.37 -7.23 16 23 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 24 H -0.27 -6.98 6.64 56.52 0.38 -6.61 16 25 C 0.12 2.68 3.78 -3.71 -0.01 2.66 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.55 6.47 -51.93 -0.34 1.22 16 31 H 0.25 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.40 4.97 8.40 -40.82 -0.34 4.63 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 40 H 0.08 2.08 4.50 -51.93 -0.23 1.85 16 41 H 0.02 0.54 7.08 -51.93 -0.37 0.17 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -34.62 332.43 -5.80 -40.42 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.92 Total: 2.43 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.76 Total: 5.72 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.10 Total: -60.19 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.12 Total: -12.48 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.14 Total: 19.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.62 -5.80 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008475410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.082 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds