Wall clock time and date at job start Fri Apr 10 2020 20:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46683 * 2 1 4 4 N 1.33687 * 126.27029 * 269.95910 * 3 2 1 5 5 C 1.30617 * 108.99462 * 180.02562 * 4 3 2 6 6 O 1.33668 * 109.15383 * 359.72516 * 5 4 3 7 7 C 1.35345 * 107.68334 * 0.43796 * 6 5 4 8 8 C 1.46721 * 126.64521 * 179.84228 * 7 6 5 9 9 O 1.21689 * 119.99926 * 179.68981 * 8 7 6 10 10 N 1.34775 * 119.99867 * 359.68224 * 8 7 6 11 11 C 1.46501 * 119.99806 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.49441 * 35.07161 * 11 10 8 13 13 C 1.53041 * 109.52298 * 155.11720 * 11 10 8 14 14 C 1.53041 * 109.54046 * 181.30412 * 13 11 10 15 15 C 1.53190 * 109.33525 * 298.68225 * 14 13 11 16 16 N 1.46927 * 108.77907 * 54.61787 * 15 14 13 17 17 C 1.36943 * 120.63244 * 126.41208 * 16 15 14 18 18 H 1.08003 * 119.99728 * 332.60653 * 17 16 15 19 19 C 1.38803 * 120.00050 * 152.60283 * 17 16 15 20 20 N 1.31627 * 119.99924 * 159.35284 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 339.35942 * 19 17 16 22 22 H 1.48495 * 109.47249 * 92.92243 * 21 19 17 23 23 H 1.48505 * 109.47030 * 212.92214 * 21 19 17 24 24 H 1.48494 * 109.47189 * 332.91628 * 21 19 17 25 25 C 1.46921 * 118.73949 * 306.39545 * 16 15 14 26 26 H 1.08995 * 109.47375 * 60.00246 * 1 2 3 27 27 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47301 * 299.99736 * 1 2 3 29 29 H 1.08997 * 109.47070 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.46946 * 119.99809 * 2 1 3 31 31 H 1.07997 * 125.42841 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00231 * 0.02562 * 10 8 7 33 33 H 1.08999 * 109.43297 * 61.29658 * 13 11 10 34 34 H 1.09002 * 109.48195 * 301.33799 * 13 11 10 35 35 H 1.08999 * 109.49567 * 178.71741 * 14 13 11 36 36 H 1.08997 * 109.49657 * 58.64812 * 14 13 11 37 37 H 1.09002 * 109.58656 * 174.40749 * 15 14 13 38 38 H 1.09001 * 109.58937 * 294.68990 * 15 14 13 39 39 H 0.96999 * 119.99921 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.59035 * 173.39656 * 25 16 15 41 41 H 1.09003 * 109.58464 * 293.82038 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2966 2.1663 -1.0778 5 6 2.7125 3.3422 -0.6899 6 8 2.7208 3.3857 0.6460 7 6 2.3008 2.1815 1.0992 8 6 2.1563 1.7755 2.5017 9 8 1.7606 0.6574 2.7737 10 7 2.4620 2.6409 3.4887 11 6 2.3182 2.2352 4.8890 12 1 2.5713 1.1798 4.9899 13 6 3.2570 3.0707 5.7625 14 6 3.1309 2.6250 7.2211 15 6 1.6936 2.8538 7.6989 16 7 0.7746 2.1712 6.7779 17 6 -0.1549 1.2833 7.2502 18 1 0.0319 0.7421 8.1659 19 6 -1.3370 1.0790 6.5520 20 7 -2.0341 -0.0206 6.7456 21 14 -1.9386 2.3645 5.3375 22 1 -1.4415 2.0322 3.9782 23 1 -3.4235 2.3827 5.3309 24 1 -1.4291 3.7006 5.7380 25 6 0.8716 2.4596 5.3405 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.9990 4.1521 -1.3443 32 1 2.7771 3.5322 3.2718 33 1 2.9880 4.1237 5.6799 34 1 4.2850 2.9313 5.4278 35 1 3.8164 3.2049 7.8392 36 1 3.3765 1.5661 7.3005 37 1 1.5732 2.4473 8.7031 38 1 1.4774 3.9222 7.7089 39 1 -2.8604 -0.1632 6.2580 40 1 0.2090 1.7930 4.7885 41 1 0.5878 3.4957 5.1557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008475410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:32 Heat of formation + Delta-G solvation = -21.817360 kcal Electronic energy + Delta-G solvation = -24403.705979 eV Core-core repulsion = 20898.752125 eV Total energy + Delta-G solvation = -3504.953854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.53887 -41.05774 -39.20778 -36.92466 -35.89983 -34.52493 -34.03628 -32.62736 -31.55474 -30.09287 -27.23245 -25.96077 -24.75887 -24.31311 -23.52569 -22.25591 -21.75857 -21.07340 -19.33972 -18.85824 -17.96974 -17.70282 -17.52352 -16.96746 -16.16646 -15.97554 -15.76327 -15.55207 -15.46319 -15.04936 -14.89025 -14.53397 -14.45082 -14.12542 -13.87841 -13.80514 -13.45370 -12.70398 -12.63130 -12.60497 -12.49685 -12.23941 -12.16653 -12.01761 -11.81545 -11.72896 -11.70632 -11.39085 -11.20678 -10.85196 -10.41656 -10.02894 -8.96306 -8.22752 -5.53312 -0.30561 1.22940 1.27799 1.31209 1.35709 1.37659 1.88479 2.05097 2.35261 3.00970 3.05423 3.34258 3.54864 3.64949 3.78684 3.99007 4.11675 4.20053 4.22548 4.29738 4.31005 4.36550 4.39021 4.63936 4.68757 4.76879 4.84136 4.88136 4.95779 5.01368 5.05525 5.13738 5.14554 5.19622 5.23240 5.29245 5.52733 5.82783 6.08181 6.21934 6.50677 6.85931 6.94687 7.57617 7.96989 8.97031 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.005738 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.016744 B = 4878.564556 C = 5938.563167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.054 4.054 3 C 0.077 3.923 4 N -0.520 5.520 5 C 0.231 3.769 6 O -0.188 6.188 7 C -0.133 4.133 8 C 0.597 3.403 9 O -0.545 6.545 10 N -0.699 5.699 11 C 0.136 3.864 12 H 0.064 0.936 13 C -0.107 4.107 14 C -0.124 4.124 15 C 0.136 3.864 16 N -0.617 5.617 17 C -0.248 4.248 18 H 0.059 0.941 19 C -0.031 4.031 20 N -0.952 5.952 21 Si 0.941 3.059 22 H -0.296 1.296 23 H -0.307 1.307 24 H -0.253 1.253 25 C 0.119 3.881 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.025 0.975 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.315 0.685 32 H 0.418 0.582 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.260 0.740 40 H 0.036 0.964 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.948 11.927 -14.104 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.046 4.046 4 N -0.248 5.248 5 C 0.007 3.993 6 O -0.074 6.074 7 C -0.188 4.188 8 C 0.383 3.617 9 O -0.424 6.424 10 N -0.350 5.350 11 C 0.030 3.970 12 H 0.082 0.918 13 C -0.145 4.145 14 C -0.163 4.163 15 C 0.012 3.988 16 N -0.341 5.341 17 C -0.377 4.377 18 H 0.077 0.923 19 C -0.226 4.226 20 N -0.598 5.598 21 Si 0.771 3.229 22 H -0.224 1.224 23 H -0.236 1.236 24 H -0.177 1.177 25 C -0.008 4.008 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.330 0.670 32 H 0.255 0.745 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.501 10.955 -14.458 23.224 hybrid contribution -0.863 0.569 0.064 1.036 sum 13.638 11.524 -14.395 22.935 Atomic orbital electron populations 1.21595 0.93917 1.03005 1.00842 1.20159 0.96556 0.88048 1.04371 1.22206 0.96892 0.98548 0.86959 1.70365 1.18818 1.04670 1.30973 1.29715 0.93152 0.97572 0.78870 1.84482 1.65019 1.32398 1.25548 1.22549 1.14500 0.86431 0.95356 1.16688 0.77715 0.84833 0.82500 1.90920 1.47438 1.21528 1.82491 1.45832 1.66437 1.17180 1.05574 1.21527 0.96379 1.00035 0.79090 0.91764 1.21683 0.98796 0.99635 0.94358 1.21919 0.97079 1.01613 0.95679 1.21278 0.89124 0.95462 0.92974 1.44434 1.38972 1.49619 1.01116 1.18900 0.95589 1.14483 1.08772 0.92348 1.25847 0.97224 0.98666 1.00846 1.69957 1.17852 1.25886 1.46111 0.85995 0.75932 0.82192 0.78824 1.22427 1.23567 1.17719 1.21638 0.96129 0.97743 0.85257 0.91621 0.90330 0.95540 0.88070 0.89985 0.67004 0.74462 0.89591 0.89064 0.87688 0.93149 0.92300 0.93800 0.93077 0.94546 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.89 71.98 0.71 -3.20 16 2 C -0.05 -1.51 5.92 29.85 0.18 -1.34 16 3 C 0.08 2.19 6.41 41.84 0.27 2.46 16 4 N -0.52 -11.97 11.26 -303.12 -3.41 -15.38 16 5 C 0.23 3.38 13.21 130.42 1.72 5.10 16 6 O -0.19 -3.83 10.57 -7.14 -0.08 -3.91 16 7 C -0.13 -3.84 7.18 24.05 0.17 -3.66 16 8 C 0.60 20.86 7.75 86.46 0.67 21.53 16 9 O -0.54 -23.88 14.46 -4.31 -0.06 -23.95 16 10 N -0.70 -20.87 5.08 -446.09 -2.27 -23.13 16 11 C 0.14 4.73 2.60 45.07 0.12 4.85 16 12 H 0.06 2.67 7.58 -2.38 -0.02 2.65 16 13 C -0.11 -2.64 5.36 30.62 0.16 -2.48 16 14 C -0.12 -3.36 6.08 30.67 0.19 -3.18 16 15 C 0.14 4.89 6.52 86.36 0.56 5.45 16 16 N -0.62 -29.45 2.77 -699.11 -1.94 -31.38 16 17 C -0.25 -14.55 10.03 84.03 0.84 -13.70 16 18 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 19 C -0.03 -1.89 5.23 84.86 0.44 -1.45 16 20 N -0.95 -62.78 13.97 21.65 0.30 -62.48 16 21 Si 0.94 49.98 24.34 68.60 1.67 51.65 16 22 H -0.30 -16.00 6.62 99.48 0.66 -15.35 16 23 H -0.31 -16.32 7.11 99.48 0.71 -15.61 16 24 H -0.25 -12.45 6.64 99.48 0.66 -11.79 16 25 C 0.12 5.28 3.78 86.36 0.33 5.61 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 2.65 6.47 -2.39 -0.02 2.63 16 31 H 0.32 0.09 8.06 -2.91 -0.02 0.06 16 32 H 0.42 9.12 8.40 -92.71 -0.78 8.34 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 2.17 7.93 -2.39 -0.02 2.16 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 40 H 0.04 1.95 4.50 -2.39 -0.01 1.94 16 41 H 0.04 1.48 7.08 -2.39 -0.02 1.46 16 Total: -1.00 -82.17 332.43 0.76 -81.41 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.17 Total: 11.17 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.37 Total: 16.00 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -7.31 Total: -132.37 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.14 Total: -27.85 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.67 Total: 51.65 kcal Total: -82.17 0.76 -81.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008475410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.589 kcal (2) G-P(sol) polarization free energy of solvation -82.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds